FFCP PHASE1:Hg19::chr6:130536774..130536792,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=154075 | |EntrezGene=154075 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21574 | |HGNC=21574 | ||
|TSSclassifier=strong | |||
|UniProt=E9PR45 | |UniProt=E9PR45 | ||
|association_with_transcript=0bp_to_ENST00000532763_5end | |association_with_transcript=0bp_to_ENST00000532763_5end | ||
|cluster_id=chr6:130536774..130536792,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_3_at_SAMD3_5end | |description=CAGE_peak_3_at_SAMD3_5end | ||
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|ontology_enrichment_celltype=CL:0000791!1.44e-23!18;CL:0000789!1.44e-23!18;CL:0002420!1.44e-23!18;CL:0002419!1.44e-23!18;CL:0000790!1.44e-23!18;CL:0000738!4.54e-20!140;CL:0000084!8.64e-19!25;CL:0000827!8.64e-19!25;CL:0000625!1.00e-15!11;CL:0002087!1.76e-15!119;CL:0000037!6.28e-14!172;CL:0000566!6.28e-14!172;CL:0002031!9.61e-14!124;CL:0000838!1.42e-13!52;CL:0000542!3.89e-13!53;CL:0000051!3.89e-13!53;CL:0002032!2.23e-12!165;CL:0000837!2.23e-12!165;CL:0000988!4.10e-12!182;CL:0000624!2.41e-08!6 | |ontology_enrichment_celltype=CL:0000791!1.44e-23!18;CL:0000789!1.44e-23!18;CL:0002420!1.44e-23!18;CL:0002419!1.44e-23!18;CL:0000790!1.44e-23!18;CL:0000738!4.54e-20!140;CL:0000084!8.64e-19!25;CL:0000827!8.64e-19!25;CL:0000625!1.00e-15!11;CL:0002087!1.76e-15!119;CL:0000037!6.28e-14!172;CL:0000566!6.28e-14!172;CL:0002031!9.61e-14!124;CL:0000838!1.42e-13!52;CL:0000542!3.89e-13!53;CL:0000051!3.89e-13!53;CL:0002032!2.23e-12!165;CL:0000837!2.23e-12!165;CL:0000988!4.10e-12!182;CL:0000624!2.41e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.73e-42;18!CL:0000789;1.73e-42;18!CL:0002419;1.73e-42;18!CL:0000084;2.36e-32;25!CL:0000625;8.28e-28;11!CL:0000624;3.57e-14;6!CL:0000542;1.99e-09;53!CL:0000623;1.15e-08;3!CL:0000898;3.62e-08;3!CL:0000226;5.25e-08;3!CL:0000842;5.25e-08;3!CL:0000767;8.54e-08;3!CL:0002087;8.59e-08;104!CL:0002619;4.47e-07;3!CL:0000094;5.86e-07;8 | |ontology_enrichment_celltype_v019=CL:0000791;1.73e-42;18!CL:0000789;1.73e-42;18!CL:0002419;1.73e-42;18!CL:0000084;2.36e-32;25!CL:0000625;8.28e-28;11!CL:0000624;3.57e-14;6!CL:0000542;1.99e-09;53!CL:0000623;1.15e-08;3!CL:0000898;3.62e-08;3!CL:0000226;5.25e-08;3!CL:0000842;5.25e-08;3!CL:0000767;8.54e-08;3!CL:0002087;8.59e-08;104!CL:0002619;4.47e-07;3!CL:0000094;5.86e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.87e-42,18;CL:0000789,1.87e-42,18;CL:0002420,1.87e-42,18;CL:0002419,1.87e-42,18;CL:0000790,1.87e-42,18;CL:0000084,2.38e-32,25;CL:0000827,2.38e-32,25;CL:0000625,7.79e-28,11;CL:0000738,2.56e-19,136;CL:0002087,3.62e-18,115;CL:0000838,6.27e-18,52;CL:0000542,1.80e-17,53;CL:0000051,1.80e-17,53;CL:0000037,2.06e-14,168;CL:0000624,3.92e-14,6;CL:0002031,1.41e-13,120;CL:0000988,4.02e-13,177;CL:0002032,1.28e-12,161;CL:0000837,1.28e-12,161;CL:0000623,1.15e-08,3;CL:0000825,1.15e-08,3;CL:0000898,3.58e-08,3;CL:0000226,5.78e-08,3;CL:0000842,5.78e-08,3;CL:0000767,8.05e-08,3;CL:0002619,4.68e-07,3;CL:0000094,5.44e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000790;1.73e-42;18!CL:0000051;1.99e-09;53 | |ontology_enrichment_development_v019=CL:0000790;1.73e-42;18!CL:0000051;1.99e-09;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.55e-23!115;UBERON:0000178!1.39e-11!15;UBERON:0000179!1.39e-11!15;UBERON:0000463!1.39e-11!15;UBERON:0002390!2.76e-10!102;UBERON:0003061!2.76e-10!102;UBERON:0002193!1.48e-09!112;UBERON:0004177!9.42e-07!7 | |ontology_enrichment_uberon=UBERON:0007023!4.55e-23!115;UBERON:0000178!1.39e-11!15;UBERON:0000179!1.39e-11!15;UBERON:0000463!1.39e-11!15;UBERON:0002390!2.76e-10!102;UBERON:0003061!2.76e-10!102;UBERON:0002193!1.48e-09!112;UBERON:0004177!9.42e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.66e-21;15!UBERON:0000179;2.66e-21;15!UBERON:0000463;2.66e-21;15!UBERON:0002390;4.49e-14;32!UBERON:0002193;1.86e-08;42!UBERON:0004177;1.96e-07;5!UBERON:0005057;1.96e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0000178;2.66e-21;15!UBERON:0000179;2.66e-21;15!UBERON:0000463;2.66e-21;15!UBERON:0002390;4.49e-14;32!UBERON:0002193;1.86e-08;42!UBERON:0004177;1.96e-07;5!UBERON:0005057;1.96e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.72e-21,15;UBERON:0000179,2.72e-21,15;UBERON:0000463,2.72e-21,15;UBERON:0002390,1.08e-12,98;UBERON:0003061,1.08e-12,98;UBERON:0002193,9.14e-12,108;UBERON:0004177,1.34e-11,7;UBERON:0005057,1.34e-11,7;UBERON:0002370,4.74e-10,4;UBERON:0005058,4.74e-10,4;UBERON:0009113,4.74e-10,4;UBERON:0003295,4.74e-10,4;UBERON:0005562,4.74e-10,4 | |||
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| ||
|short_description=p3@SAMD3 | |short_description=p3@SAMD3 | ||
}} | }} |
Latest revision as of 17:24, 24 September 2015
Short description: | p3@SAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SAMD3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000532763_5end |
EntrezGene: | SAMD3 |
HGNC: | 21574 |
UniProt: | E9PR45 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.87e-42 | 18 |
alpha-beta T cell | 1.87e-42 | 18 |
immature T cell | 1.87e-42 | 18 |
mature T cell | 1.87e-42 | 18 |
immature alpha-beta T cell | 1.87e-42 | 18 |
T cell | 2.38e-32 | 25 |
pro-T cell | 2.38e-32 | 25 |
CD8-positive, alpha-beta T cell | 7.79e-28 | 11 |
leukocyte | 2.56e-19 | 136 |
nongranular leukocyte | 3.62e-18 | 115 |
lymphoid lineage restricted progenitor cell | 6.27e-18 | 52 |
lymphocyte | 1.80e-17 | 53 |
common lymphoid progenitor | 1.80e-17 | 53 |
hematopoietic stem cell | 2.06e-14 | 168 |
CD4-positive, alpha-beta T cell | 3.92e-14 | 6 |
hematopoietic lineage restricted progenitor cell | 1.41e-13 | 120 |
hematopoietic cell | 4.02e-13 | 177 |
hematopoietic oligopotent progenitor cell | 1.28e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.28e-12 | 161 |
natural killer cell | 1.15e-08 | 3 |
pro-NK cell | 1.15e-08 | 3 |
naive T cell | 3.58e-08 | 3 |
single nucleate cell | 5.78e-08 | 3 |
mononuclear cell | 5.78e-08 | 3 |
basophil | 8.05e-08 | 3 |
adult endothelial progenitor cell | 4.68e-07 | 3 |
granulocyte | 5.44e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 2.72e-21 | 15 |
haemolymphatic fluid | 2.72e-21 | 15 |
organism substance | 2.72e-21 | 15 |
hematopoietic system | 1.08e-12 | 98 |
blood island | 1.08e-12 | 98 |
hemolymphoid system | 9.14e-12 | 108 |
hemopoietic organ | 1.34e-11 | 7 |
immune organ | 1.34e-11 | 7 |
thymus | 4.74e-10 | 4 |
hemolymphoid system gland | 4.74e-10 | 4 |
thymic region | 4.74e-10 | 4 |
pharyngeal gland | 4.74e-10 | 4 |
thymus primordium | 4.74e-10 | 4 |