FFCP PHASE1:Hg19::chr9:120470531..120470542,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7099 | |EntrezGene=7099 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11850 | |HGNC=11850 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=56bp_to_ENST00000490685_5end | |association_with_transcript=56bp_to_ENST00000490685_5end | ||
|cluster_id=chr9:120470531..120470542,+ | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_10_at_TLR4_5end | |description=CAGE_peak_10_at_TLR4_5end | ||
|id=chr9:120470531..120470542,+ | |id=chr9:120470531..120470542,+ | ||
|ontology_enrichment_celltype=CL:0002057!2.85e-42!42;CL:0002194!7.12e-42!63;CL:0000576!7.12e-42!63;CL:0000040!7.12e-42!63;CL:0000559!7.12e-42!63;CL:0000766!1.93e-40!76;CL:0002009!3.56e-40!65;CL:0000860!1.09e-38!45;CL:0000839!3.30e-38!70;CL:0000557!1.77e-37!71;CL:0000763!4.53e-24!112;CL:0000049!4.53e-24!112;CL:0002087!5.51e-19!119;CL:0000738!3.41e-18!140;CL:0002031!9.88e-17!124;CL:0000037!5.35e-13!172;CL:0000566!5.35e-13!172;CL:0002032!1.21e-12!165;CL:0000837!1.21e-12!165;CL:0000988!1.52e-11!182;CL:0000134!4.72e-09!358;CL:0000219!7.43e-09!390;CL:0002320!1.56e-08!365;CL:0000775!6.42e-07!3 | |ontology_enrichment_celltype=CL:0002057!2.85e-42!42;CL:0002194!7.12e-42!63;CL:0000576!7.12e-42!63;CL:0000040!7.12e-42!63;CL:0000559!7.12e-42!63;CL:0000766!1.93e-40!76;CL:0002009!3.56e-40!65;CL:0000860!1.09e-38!45;CL:0000839!3.30e-38!70;CL:0000557!1.77e-37!71;CL:0000763!4.53e-24!112;CL:0000049!4.53e-24!112;CL:0002087!5.51e-19!119;CL:0000738!3.41e-18!140;CL:0002031!9.88e-17!124;CL:0000037!5.35e-13!172;CL:0000566!5.35e-13!172;CL:0002032!1.21e-12!165;CL:0000837!1.21e-12!165;CL:0000988!1.52e-11!182;CL:0000134!4.72e-09!358;CL:0000219!7.43e-09!390;CL:0002320!1.56e-08!365;CL:0000775!6.42e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.53e-79;33!CL:0002057;3.53e-79;33!CL:0000473;4.23e-60;39!CL:0000234;4.23e-60;39!CL:0000576;1.73e-41;48!CL:0000766;9.71e-32;69!CL:0000763;1.33e-15;100!CL:0002087;1.64e-11;104!CL:0000775;1.96e-11;3!CL:0000738;7.80e-10;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.69e-67,42;CL:0002057,4.69e-67,42;CL:0000473,1.73e-64,48;CL:0000234,1.73e-64,48;CL:0002194,6.04e-56,59;CL:0000576,6.04e-56,59;CL:0000040,6.04e-56,59;CL:0000559,6.04e-56,59;CL:0000766,9.33e-55,72;CL:0002009,5.08e-54,61;CL:0000839,1.04e-49,66;CL:0000557,6.34e-49,67;CL:0000763,2.25e-35,108;CL:0000049,2.25e-35,108;CL:0000738,2.52e-27,136;CL:0002087,4.20e-27,115;CL:0002031,8.01e-26,120;CL:0002032,1.76e-22,161;CL:0000837,1.76e-22,161;CL:0000037,2.22e-21,168;CL:0000988,4.32e-20,177;CL:0000775,1.97e-11,3;CL:0000134,6.37e-10,354;CL:0002320,1.21e-09,361;CL:0000219,1.16e-08,386;CL:0000048,1.85e-07,427;CL:0000723,2.71e-07,433;CL:0000034,4.45e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;3.45e-50;42!CL:0000049;2.68e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;1.27e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,1.05e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.75e-33!80;UBERON:0001474!3.95e-33!86;UBERON:0002390!4.43e-30!102;UBERON:0003061!4.43e-30!102;UBERON:0004765!1.50e-27!101;UBERON:0001434!1.50e-27!101;UBERON:0002193!4.66e-26!112;UBERON:0002405!2.26e-22!115;UBERON:0003081!7.10e-17!216;UBERON:0002204!4.91e-16!167;UBERON:0002384!2.84e-08!375;UBERON:0000926!3.87e-08!448;UBERON:0004120!3.87e-08!448;UBERON:0006603!3.87e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.11e-43,76;UBERON:0001474,2.11e-39,82;UBERON:0004765,1.33e-35,90;UBERON:0002405,2.40e-34,93;UBERON:0002390,2.04e-32,98;UBERON:0003061,2.04e-32,98;UBERON:0001434,1.06e-31,100;UBERON:0002193,4.32e-29,108;UBERON:0002204,1.68e-17,167;UBERON:0003081,1.04e-13,203;UBERON:0002384,2.89e-09,371;UBERON:0000926,2.06e-07,315;UBERON:0004120,2.06e-07,315;UBERON:0006603,2.06e-07,315 | |||
|phase1_expression=0,1.07050261945492,0.140954404095971,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,1.11957737119962,0.647787332037959,0.77272670290256,2.18097358169347,1.13362783106643,0.727752183563449,0.929716147622738,1.23350366406548,0.929119112685311,1.1507695692886,2.56160706529101,0.236482229888585,1.72372840368309,1.29096936716765,1.35426486594342,2.25890807451126,0.272906150057846,0.224723484445085,1.83650335422542,0.641858054152187,0,0.659702600373432,1.19678194572979,2.55734850319616,6.38460324982885,1.70215567407342,1.86846674698672,1.50749199154046,3.65038042894141,0.65156653411535,3.02699751316684,2.57794345191295,1.26584954976354,0,0.212604299965044,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0.825354125820202,0.208994966536811,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.22001485746285,0,0,0.845302752556,0.26593811658487,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.99205619157746,17.9496875522415,0.414415513436035,0,0,0,0,0.713715955188647,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0.38126038784765,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0.238231775457789,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0.600420288709789,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.488105059607853,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0.155262956876259,0.414706207840855,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47394725759087,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0.4226557275834,0.169927114687817,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 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|phase1_expression=0,1.07050261945492,0.140954404095971,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,1.11957737119962,0.647787332037959,0.77272670290256,2.18097358169347,1.13362783106643,0.727752183563449,0.929716147622738,1.23350366406548,0.929119112685311,1.1507695692886,2.56160706529101,0.236482229888585,1.72372840368309,1.29096936716765,1.35426486594342,2.25890807451126,0.272906150057846,0.224723484445085,1.83650335422542,0.641858054152187,0,0.659702600373432,1.19678194572979,2.55734850319616,6.38460324982885,1.70215567407342,1.86846674698672,1.50749199154046,3.65038042894141,0.65156653411535,3.02699751316684,2.57794345191295,1.26584954976354,0,0.212604299965044,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0.825354125820202,0.208994966536811,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.22001485746285,0,0,0.845302752556,0.26593811658487,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.99205619157746,17.9496875522415,0.414415513436035,0,0,0,0,0.713715955188647,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0.38126038784765,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0.238231775457789,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0.600420288709789,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.488105059607853,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0.155262956876259,0.414706207840855,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47394725759087,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0.4226557275834,0.169927114687817,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p10@TLR4 | |short_description=p10@TLR4 | ||
}} | }} |
Latest revision as of 18:54, 24 September 2015
Short description: | p10@TLR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_TLR4_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 56bp_to_ENST00000490685_5end |
EntrezGene: | TLR4 |
HGNC: | 11850 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.69e-67 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.69e-67 | 42 |
defensive cell | 1.73e-64 | 48 |
phagocyte | 1.73e-64 | 48 |
monopoietic cell | 6.04e-56 | 59 |
monocyte | 6.04e-56 | 59 |
monoblast | 6.04e-56 | 59 |
promonocyte | 6.04e-56 | 59 |
myeloid leukocyte | 9.33e-55 | 72 |
macrophage dendritic cell progenitor | 5.08e-54 | 61 |
myeloid lineage restricted progenitor cell | 1.04e-49 | 66 |
granulocyte monocyte progenitor cell | 6.34e-49 | 67 |
myeloid cell | 2.25e-35 | 108 |
common myeloid progenitor | 2.25e-35 | 108 |
leukocyte | 2.52e-27 | 136 |
nongranular leukocyte | 4.20e-27 | 115 |
hematopoietic lineage restricted progenitor cell | 8.01e-26 | 120 |
hematopoietic oligopotent progenitor cell | 1.76e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.76e-22 | 161 |
hematopoietic stem cell | 2.22e-21 | 168 |
hematopoietic cell | 4.32e-20 | 177 |
neutrophil | 1.97e-11 | 3 |
mesenchymal cell | 6.37e-10 | 354 |
connective tissue cell | 1.21e-09 | 361 |
motile cell | 1.16e-08 | 386 |
multi fate stem cell | 1.85e-07 | 427 |
somatic stem cell | 2.71e-07 | 433 |
stem cell | 4.45e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.11e-43 | 76 |
bone element | 2.11e-39 | 82 |
skeletal element | 1.33e-35 | 90 |
immune system | 2.40e-34 | 93 |
hematopoietic system | 2.04e-32 | 98 |
blood island | 2.04e-32 | 98 |
skeletal system | 1.06e-31 | 100 |
hemolymphoid system | 4.32e-29 | 108 |
musculoskeletal system | 1.68e-17 | 167 |
lateral plate mesoderm | 1.04e-13 | 203 |
connective tissue | 2.89e-09 | 371 |
mesoderm | 2.06e-07 | 315 |
mesoderm-derived structure | 2.06e-07 | 315 |
presumptive mesoderm | 2.06e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 1.05e-08 | 1 |