FFCP PHASE1:Hg19::chr22:40297052..40297071,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9402 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4563 | |||
|TSSclassifier=strong | |||
|UniProt=O75791,F5H1V3,Q6FI14 | |||
|association_with_transcript=-14bp_to_ENST00000344138,ENST00000543252,NM_004810,uc003ayh.1,uc003ayi.2,uc011aom.1,uc011aon.1_5end | |||
|cluster_id=chr22:40297052..40297071,+ | |||
|description=CAGE_peak_6_at_GRAP2_5end | |||
|id=chr22:40297052..40297071,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.58e-54!53;CL:0000051!1.58e-54!53;CL:0000838!4.67e-53!52;CL:0000037!2.71e-28!172;CL:0000566!2.71e-28!172;CL:0000791!2.25e-27!18;CL:0000789!2.25e-27!18;CL:0002420!2.25e-27!18;CL:0002419!2.25e-27!18;CL:0000790!2.25e-27!18;CL:0000738!4.18e-26!140;CL:0000988!1.19e-25!182;CL:0002032!1.34e-25!165;CL:0000837!1.34e-25!165;CL:0000084!3.32e-25!25;CL:0000827!3.32e-25!25;CL:0000945!1.15e-24!24;CL:0000826!1.15e-24!24;CL:0002031!7.22e-24!124;CL:0002087!1.91e-22!119;CL:0000236!4.39e-19!14;CL:0000625!6.58e-18!11;CL:0002274!3.05e-10!5;CL:0000457!3.05e-10!5;CL:0002191!3.05e-10!5;CL:0000097!3.05e-10!5;CL:0000831!3.05e-10!5;CL:0002028!3.05e-10!5;CL:0000624!7.29e-10!6 | |||
|ontology_enrichment_celltype_v019=CL:0000542;5.81e-28;53!CL:0000791;6.54e-28;18!CL:0000789;6.54e-28;18!CL:0002419;6.54e-28;18!CL:0000084;3.74e-25;25!CL:0000945;1.79e-24;24!CL:0000625;2.37e-24;11!CL:0000236;3.58e-21;13!CL:0000097;3.01e-16;5!CL:0000163;7.81e-09;9!CL:0000624;1.05e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.96e-51,53;CL:0000051,4.96e-51,53;CL:0000838,7.10e-49,52;CL:0000791,5.34e-28,18;CL:0000789,5.34e-28,18;CL:0002420,5.34e-28,18;CL:0002419,5.34e-28,18;CL:0000790,5.34e-28,18;CL:0000084,3.80e-25,25;CL:0000827,3.80e-25,25;CL:0000945,1.32e-24,24;CL:0000826,1.32e-24,24;CL:0000625,2.18e-24,11;CL:0002031,9.79e-24,120;CL:0000738,1.04e-22,136;CL:0000037,2.10e-21,168;CL:0002032,2.29e-21,161;CL:0000837,2.29e-21,161;CL:0000988,8.93e-20,177;CL:0000236,1.24e-19,14;CL:0002087,1.47e-18,115;CL:0000097,3.03e-16,5;CL:0002028,3.03e-16,5;CL:0000163,7.83e-09,9;CL:0000624,9.38e-08,6;CL:0000815,9.83e-07,2;CL:0000792,9.83e-07,2;CL:0002677,9.83e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000051;5.81e-28;53!CL:0000790;6.54e-28;18 | |||
|ontology_enrichment_disease=DOID:1036!2.25e-09!8;DOID:2531!5.17e-07!51;DOID:0060083!5.17e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.99e-11!7;UBERON:0000178!3.61e-11!15;UBERON:0000179!3.61e-11!15;UBERON:0000463!3.61e-11!15;UBERON:0002370!1.49e-07!4;UBERON:0005058!1.49e-07!4;UBERON:0009113!1.49e-07!4;UBERON:0003295!1.49e-07!4;UBERON:0005562!1.49e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;7.35e-08;2!UBERON:0005058;7.35e-08;2!UBERON:0009113;7.35e-08;2 | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.132949635666,2.62721886239826,2.83358812729245,0,0.383829398097213,0.464448369948228,0,0,0,0,0.568676929949686,0,0,0.401088894940283,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27988733383968,2.73069305631066,4.44754626931777,2.56038133539904,4.40435585739614,1.72425731986345,5.2883589822789,2.86216126360609,1.1384259382189,0.587237189370939,1.52909291250092,0,0,0.263384084775077,2.55722701147983,1.17903228824749,0.822405995998037,4.34684888015763,1.95553359980154,4.73447805734733,5.84480185223734,3.11949279278486,2.65145316727353,2.43687284041983,2.70803863765016,2.81800903396485,4.03183977435623,2.63100647365882,2.48715016007264,4.34704628602579,2.96573126324121,5.61835738988397,5.22677619024884,2.49280553934646,0.383220493601921,3.09264700934367,2.53019692019503,0.95569624297229,3.90650072313851,2.85135613334512,2.40920190524436,2.17577238962511,4.99722906209383,1.18388626022008,2.46338399076314,1.81446068902259,1.33720097891754,1.59306844271079,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.85609409356116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.40462209264727,6.77972941901841,4.56121854189699,3.02651902175619,3.7872730027914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672510863961164,0.788123040807709,0.215627574859517,1.02674429023799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.862856803274467,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,2.02979043692868,0.764637207142375,0.569647187174163,1.66762242820452,3.29089818468955,0.648473311192717,1.08006287447623,0.79312517629427,0,0,0,1.67222857613147,0,0.497992903438899,1.27541018183058,1.79621434289535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828851746593443,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0.498635045700469,0.676786981851542,0.392125068635479,0.167821586975843,0.948768663620925,3.33766815858795,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0.729819156862664,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.16507325601285,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,3.44788587147224,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0.230467975111559,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,0.0939839179798536,0.45120521581504,13.0922914261657,0,0,0,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,7.55690245081271,11.6700462876213,0,0,0.202117188958219,0.217716747896961,0,0.80822463617505,0.0717222053926763,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,3.42165449104745,1.28227396921293 | |||
|short_description=p6@GRAP2 | |||
}} |
Latest revision as of 19:16, 24 September 2015
Short description: | p6@GRAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GRAP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -14bp_to_ENST00000344138, ENST00000543252, NM_004810, uc003ayh.1, uc003ayi.2, uc011aom.1, uc011aon.1_5end |
EntrezGene: | GRAP2 |
HGNC: | 4563 |
UniProt: | O75791F5H1V3Q6FI14 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.96e-51 | 53 |
common lymphoid progenitor | 4.96e-51 | 53 |
lymphoid lineage restricted progenitor cell | 7.10e-49 | 52 |
mature alpha-beta T cell | 5.34e-28 | 18 |
alpha-beta T cell | 5.34e-28 | 18 |
immature T cell | 5.34e-28 | 18 |
mature T cell | 5.34e-28 | 18 |
immature alpha-beta T cell | 5.34e-28 | 18 |
T cell | 3.80e-25 | 25 |
pro-T cell | 3.80e-25 | 25 |
lymphocyte of B lineage | 1.32e-24 | 24 |
pro-B cell | 1.32e-24 | 24 |
CD8-positive, alpha-beta T cell | 2.18e-24 | 11 |
hematopoietic lineage restricted progenitor cell | 9.79e-24 | 120 |
leukocyte | 1.04e-22 | 136 |
hematopoietic stem cell | 2.10e-21 | 168 |
hematopoietic oligopotent progenitor cell | 2.29e-21 | 161 |
hematopoietic multipotent progenitor cell | 2.29e-21 | 161 |
hematopoietic cell | 8.93e-20 | 177 |
B cell | 1.24e-19 | 14 |
nongranular leukocyte | 1.47e-18 | 115 |
mast cell | 3.03e-16 | 5 |
basophil mast progenitor cell | 3.03e-16 | 5 |
endocrine cell | 7.83e-09 | 9 |
CD4-positive, alpha-beta T cell | 9.38e-08 | 6 |
regulatory T cell | 9.83e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 9.83e-07 | 2 |
naive regulatory T cell | 9.83e-07 | 2 |