FFCP PHASE1:Hg19::chr9:123689030..123689103,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7185 | |EntrezGene=7185 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12031 | |HGNC=12031 | ||
|TSSclassifier=strong | |||
|UniProt=Q13077 | |UniProt=Q13077 | ||
|association_with_transcript=69bp_to_NM_005658,uc004bku.1_5end | |association_with_transcript=69bp_to_NM_005658,uc004bku.1_5end | ||
|cluster_id=chr9:123689030..123689103,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_TRAF1_5end | |description=CAGE_peak_4_at_TRAF1_5end | ||
|id=chr9:123689030..123689103,- | |id=chr9:123689030..123689103,- | ||
|ontology_enrichment_celltype=CL:0000542!4.56e-27!53;CL:0000051!4.56e-27!53;CL:0000838!2.69e-26!52;CL:0000738!1.35e-24!140;CL:0000791!7.54e-24!18;CL:0000789!7.54e-24!18;CL:0002420!7.54e-24!18;CL:0002419!7.54e-24!18;CL:0000790!7.54e-24!18;CL:0002087!7.87e-24!119;CL:0000084!5.25e-23!25;CL:0000827!5.25e-23!25;CL:0002031!5.71e-20!124;CL:0000988!1.45e-17!182;CL:0000037!1.80e-17!172;CL:0000566!1.80e-17!172;CL:0002032!8.95e-16!165;CL:0000837!8.95e-16!165;CL:0000625!2.52e-15!11;CL:0000624!3.86e-09!6;CL:0000080!1.40e-07!6;CL:0000990!5.60e-07!8;CL:0000451!7.42e-07!10 | |ontology_enrichment_celltype=CL:0000542!4.56e-27!53;CL:0000051!4.56e-27!53;CL:0000838!2.69e-26!52;CL:0000738!1.35e-24!140;CL:0000791!7.54e-24!18;CL:0000789!7.54e-24!18;CL:0002420!7.54e-24!18;CL:0002419!7.54e-24!18;CL:0000790!7.54e-24!18;CL:0002087!7.87e-24!119;CL:0000084!5.25e-23!25;CL:0000827!5.25e-23!25;CL:0002031!5.71e-20!124;CL:0000988!1.45e-17!182;CL:0000037!1.80e-17!172;CL:0000566!1.80e-17!172;CL:0002032!8.95e-16!165;CL:0000837!8.95e-16!165;CL:0000625!2.52e-15!11;CL:0000624!3.86e-09!6;CL:0000080!1.40e-07!6;CL:0000990!5.60e-07!8;CL:0000451!7.42e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.44e-48;18!CL:0000789;3.44e-48;18!CL:0002419;3.44e-48;18!CL:0000084;7.77e-41;25!CL:0000625;2.45e-30;11!CL:0000542;5.24e-20;53!CL:0000624;2.76e-17;6!CL:0000898;9.79e-10;3!CL:0002087;9.65e-09;104!CL:0000226;1.02e-08;3!CL:0000842;1.02e-08;3!CL:0000623;2.08e-08;3!CL:0000815;3.46e-07;2!CL:0000792;3.46e-07;2!CL:0002677;3.46e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.21e-48,18;CL:0000789,4.21e-48,18;CL:0002420,4.21e-48,18;CL:0002419,4.21e-48,18;CL:0000790,4.21e-48,18;CL:0000838,7.52e-43,52;CL:0000542,7.07e-42,53;CL:0000051,7.07e-42,53;CL:0000084,1.06e-40,25;CL:0000827,1.06e-40,25;CL:0000625,3.08e-30,11;CL:0002087,1.54e-22,115;CL:0000738,5.13e-20,136;CL:0002031,2.07e-18,120;CL:0000624,2.50e-17,6;CL:0000037,2.39e-14,168;CL:0000988,3.91e-13,177;CL:0002032,2.20e-12,161;CL:0000837,2.20e-12,161;CL:0000898,9.79e-10,3;CL:0000226,1.03e-08,3;CL:0000842,1.03e-08,3;CL:0000623,2.02e-08,3;CL:0000825,2.02e-08,3;CL:0000815,3.46e-07,2;CL:0000792,3.46e-07,2;CL:0002677,3.46e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.44e-48;18!CL:0000051;5.24e-20;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.16e-15!15;UBERON:0000179!1.16e-15!15;UBERON:0000463!1.16e-15!15;UBERON:0007023!1.71e-12!115;UBERON:0002193!1.53e-11!112;UBERON:0002390!1.60e-11!102;UBERON:0003061!1.60e-11!102;UBERON:0004177!3.10e-08!7 | |ontology_enrichment_uberon=UBERON:0000178!1.16e-15!15;UBERON:0000179!1.16e-15!15;UBERON:0000463!1.16e-15!15;UBERON:0007023!1.71e-12!115;UBERON:0002193!1.53e-11!112;UBERON:0002390!1.60e-11!102;UBERON:0003061!1.60e-11!102;UBERON:0004177!3.10e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.43e-20;15!UBERON:0000179;2.43e-20;15!UBERON:0000463;2.43e-20;15!UBERON:0002390;2.67e-11;32!UBERON:0002193;1.37e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.58e-20,15;UBERON:0000179,2.58e-20,15;UBERON:0000463,2.58e-20,15 | |||
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|short_description=p4@TRAF1 | |short_description=p4@TRAF1 | ||
}} | }} |
Latest revision as of 20:10, 24 September 2015
Short description: | p4@TRAF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRAF1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 69bp_to_NM_005658, uc004bku.1_5end |
EntrezGene: | TRAF1 |
HGNC: | 12031 |
UniProt: | Q13077 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.21e-48 | 18 |
alpha-beta T cell | 4.21e-48 | 18 |
immature T cell | 4.21e-48 | 18 |
mature T cell | 4.21e-48 | 18 |
immature alpha-beta T cell | 4.21e-48 | 18 |
lymphoid lineage restricted progenitor cell | 7.52e-43 | 52 |
lymphocyte | 7.07e-42 | 53 |
common lymphoid progenitor | 7.07e-42 | 53 |
T cell | 1.06e-40 | 25 |
pro-T cell | 1.06e-40 | 25 |
CD8-positive, alpha-beta T cell | 3.08e-30 | 11 |
nongranular leukocyte | 1.54e-22 | 115 |
leukocyte | 5.13e-20 | 136 |
hematopoietic lineage restricted progenitor cell | 2.07e-18 | 120 |
CD4-positive, alpha-beta T cell | 2.50e-17 | 6 |
hematopoietic stem cell | 2.39e-14 | 168 |
hematopoietic cell | 3.91e-13 | 177 |
hematopoietic oligopotent progenitor cell | 2.20e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.20e-12 | 161 |
naive T cell | 9.79e-10 | 3 |
single nucleate cell | 1.03e-08 | 3 |
mononuclear cell | 1.03e-08 | 3 |
natural killer cell | 2.02e-08 | 3 |
pro-NK cell | 2.02e-08 | 3 |
regulatory T cell | 3.46e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.46e-07 | 2 |
naive regulatory T cell | 3.46e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 2.58e-20 | 15 |
haemolymphatic fluid | 2.58e-20 | 15 |
organism substance | 2.58e-20 | 15 |