FFCP PHASE1:Hg19::chr5:1380178..1380183,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt=E5RG92 | |UniProt=E5RG92 | ||
|association_with_transcript=0bp_to_ENST00000504989,uc003jcj.1_5end | |association_with_transcript=0bp_to_ENST00000504989,uc003jcj.1_5end | ||
|cluster_id=chr5:1380178..1380183,- | |||
|coexpression_cluster_id=C277 | |coexpression_cluster_id=C277 | ||
|description=CAGE_peak_1_at_ENST00000504989_5end,CAGE_peak_1_at_uc003jcj.1_5end | |description=CAGE_peak_1_at_ENST00000504989_5end,CAGE_peak_1_at_uc003jcj.1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:6193;2.82e-09;1!DOID:3908;2.92e-07;5 | |ontology_enrichment_disease_v019=DOID:6193;2.82e-09;1!DOID:3908;2.92e-07;5 | ||
|ontology_enrichment_disease_v019_2=DOID:6193,2.82e-09,1;DOID:3908,2.88e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0001893!2.13e-29!34;UBERON:0001869!7.73e-29!32;UBERON:0002619!1.44e-28!22;UBERON:0001950!3.11e-28!20;UBERON:0002791!1.93e-27!33;UBERON:0002780!7.55e-26!41;UBERON:0001890!7.55e-26!41;UBERON:0006240!7.55e-26!41;UBERON:0003080!4.31e-25!42;UBERON:0000956!1.04e-24!25;UBERON:0000203!1.04e-24!25;UBERON:0002020!4.59e-24!34;UBERON:0003528!4.59e-24!34;UBERON:0001049!1.70e-18!57;UBERON:0005068!1.70e-18!57;UBERON:0006241!1.70e-18!57;UBERON:0007135!1.70e-18!57;UBERON:0000955!1.75e-18!69;UBERON:0006238!1.75e-18!69;UBERON:0002616!1.18e-17!59;UBERON:0001017!3.81e-17!82;UBERON:0003056!6.03e-17!61;UBERON:0005743!5.25e-16!86;UBERON:0000200!1.96e-15!6;UBERON:0002346!4.01e-15!90;UBERON:0003075!6.82e-15!86;UBERON:0007284!6.82e-15!86;UBERON:0000073!8.48e-14!94;UBERON:0001016!8.48e-14!94;UBERON:0007023!1.03e-13!115;UBERON:0000153!3.99e-09!129;UBERON:0007811!3.99e-09!129;UBERON:0000033!4.15e-09!123;UBERON:0002021!5.27e-09!5;UBERON:0001872!9.82e-09!5;UBERON:0002771!1.98e-08!3;UBERON:0001871!8.78e-08!7 | |ontology_enrichment_uberon=UBERON:0001893!2.13e-29!34;UBERON:0001869!7.73e-29!32;UBERON:0002619!1.44e-28!22;UBERON:0001950!3.11e-28!20;UBERON:0002791!1.93e-27!33;UBERON:0002780!7.55e-26!41;UBERON:0001890!7.55e-26!41;UBERON:0006240!7.55e-26!41;UBERON:0003080!4.31e-25!42;UBERON:0000956!1.04e-24!25;UBERON:0000203!1.04e-24!25;UBERON:0002020!4.59e-24!34;UBERON:0003528!4.59e-24!34;UBERON:0001049!1.70e-18!57;UBERON:0005068!1.70e-18!57;UBERON:0006241!1.70e-18!57;UBERON:0007135!1.70e-18!57;UBERON:0000955!1.75e-18!69;UBERON:0006238!1.75e-18!69;UBERON:0002616!1.18e-17!59;UBERON:0001017!3.81e-17!82;UBERON:0003056!6.03e-17!61;UBERON:0005743!5.25e-16!86;UBERON:0000200!1.96e-15!6;UBERON:0002346!4.01e-15!90;UBERON:0003075!6.82e-15!86;UBERON:0007284!6.82e-15!86;UBERON:0000073!8.48e-14!94;UBERON:0001016!8.48e-14!94;UBERON:0007023!1.03e-13!115;UBERON:0000153!3.99e-09!129;UBERON:0007811!3.99e-09!129;UBERON:0000033!4.15e-09!123;UBERON:0002021!5.27e-09!5;UBERON:0001872!9.82e-09!5;UBERON:0002771!1.98e-08!3;UBERON:0001871!8.78e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;4.96e-22;20!UBERON:0002619;4.99e-20;22!UBERON:0000956;1.34e-17;25!UBERON:0000203;1.34e-17;25!UBERON:0001893;5.53e-16;34!UBERON:0001869;6.14e-16;32!UBERON:0002021;1.63e-14;5!UBERON:0001872;4.89e-14;5!UBERON:0002791;1.75e-12;32!UBERON:0003528;2.04e-11;34!UBERON:0002020;2.04e-11;34!UBERON:0002780;2.23e-10;41!UBERON:0001890;2.23e-10;41!UBERON:0002902;4.36e-09;1!UBERON:0009899;4.36e-09;1!UBERON:0002581;8.16e-09;1!UBERON:0007190;8.16e-09;1!UBERON:0001017;3.22e-07;75 | |ontology_enrichment_uberon_v019=UBERON:0001950;4.96e-22;20!UBERON:0002619;4.99e-20;22!UBERON:0000956;1.34e-17;25!UBERON:0000203;1.34e-17;25!UBERON:0001893;5.53e-16;34!UBERON:0001869;6.14e-16;32!UBERON:0002021;1.63e-14;5!UBERON:0001872;4.89e-14;5!UBERON:0002791;1.75e-12;32!UBERON:0003528;2.04e-11;34!UBERON:0002020;2.04e-11;34!UBERON:0002780;2.23e-10;41!UBERON:0001890;2.23e-10;41!UBERON:0002902;4.36e-09;1!UBERON:0009899;4.36e-09;1!UBERON:0002581;8.16e-09;1!UBERON:0007190;8.16e-09;1!UBERON:0001017;3.22e-07;75 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,4.82e-22,20;UBERON:0002619,4.87e-20,22;UBERON:0000956,1.31e-17,25;UBERON:0000203,1.31e-17,25;UBERON:0001869,3.36e-17,32;UBERON:0001893,3.84e-16,34;UBERON:0002021,1.67e-14,5;UBERON:0001872,4.57e-14,5;UBERON:0002791,1.18e-13,32;UBERON:0002780,3.11e-13,41;UBERON:0001890,3.11e-13,41;UBERON:0003080,3.11e-13,41;UBERON:0006240,3.11e-13,41;UBERON:0003528,8.15e-13,34;UBERON:0002020,8.15e-13,34;UBERON:0000955,3.58e-11,68;UBERON:0006238,3.58e-11,68;UBERON:0001017,6.07e-11,81;UBERON:0007023,1.67e-10,114;UBERON:0000073,5.34e-10,53;UBERON:0002616,5.34e-10,53;UBERON:0001016,1.14e-09,89;UBERON:0001049,2.10e-09,56;UBERON:0005068,2.10e-09,56;UBERON:0006241,2.10e-09,56;UBERON:0007135,2.10e-09,56;UBERON:0002902,4.19e-09,1;UBERON:0009899,4.19e-09,1;UBERON:0002581,5.75e-09,1;UBERON:0007190,1.07e-08,1;UBERON:0003056,1.54e-08,61 | |||
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| ||
|short_description=p1@ENST00000504989,p1@uc003jcj.1 | |short_description=p1@ENST00000504989,p1@uc003jcj.1 | ||
}} | }} |
Latest revision as of 23:26, 24 September 2015
Short description: | p1@ENST00000504989, p1@uc003jcj.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000504989_5end, CAGE_peak_1_at_uc003jcj.1_5end |
Coexpression cluster: | C277_mesothelioma_epithelioid_thyroid_extraskeletal_alveolar_glioblastoma_adenocarcinoma |
Association with transcript: | 0bp_to_ENST00000504989, uc003jcj.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 4.82e-22 | 20 |
regional part of cerebral cortex | 4.87e-20 | 22 |
cerebral cortex | 1.31e-17 | 25 |
pallium | 1.31e-17 | 25 |
cerebral hemisphere | 3.36e-17 | 32 |
telencephalon | 3.84e-16 | 34 |
occipital lobe | 1.67e-14 | 5 |
parietal lobe | 4.57e-14 | 5 |
regional part of telencephalon | 1.18e-13 | 32 |
regional part of forebrain | 3.11e-13 | 41 |
forebrain | 3.11e-13 | 41 |
anterior neural tube | 3.11e-13 | 41 |
future forebrain | 3.11e-13 | 41 |
brain grey matter | 8.15e-13 | 34 |
gray matter | 8.15e-13 | 34 |
brain | 3.58e-11 | 68 |
future brain | 3.58e-11 | 68 |
central nervous system | 6.07e-11 | 81 |
adult organism | 1.67e-10 | 114 |
regional part of nervous system | 5.34e-10 | 53 |
regional part of brain | 5.34e-10 | 53 |
nervous system | 1.14e-09 | 89 |
neural tube | 2.10e-09 | 56 |
neural rod | 2.10e-09 | 56 |
future spinal cord | 2.10e-09 | 56 |
neural keel | 2.10e-09 | 56 |
occipital pole | 4.19e-09 | 1 |
pole of cerebral hemisphere | 4.19e-09 | 1 |
postcentral gyrus | 5.75e-09 | 1 |
paracentral gyrus | 1.07e-08 | 1 |
pre-chordal neural plate | 1.54e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 2.82e-09 | 1 |
non-small cell lung carcinoma | 2.88e-07 | 5 |