FFCP PHASE1:Hg19::chr11:88911033..88911049,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7299 | |EntrezGene=7299 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12442 | |HGNC=12442 | ||
|TSSclassifier=strong | |||
|UniProt=P14679 | |UniProt=P14679 | ||
|association_with_transcript=0bp_to_NM_000372,uc001pcs.2_5end | |association_with_transcript=0bp_to_NM_000372,uc001pcs.2_5end | ||
|cluster_id=chr11:88911033..88911049,+ | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_1_at_TYR_5end | |description=CAGE_peak_1_at_TYR_5end | ||
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|ontology_enrichment_celltype=CL:0000147!7.53e-51!14;CL:0000148!1.25e-40!10;CL:0000541!1.25e-40!10;CL:0000325!1.24e-22!39;CL:0000149!5.00e-21!4;CL:0002077!9.53e-20!33;CL:0000710!1.66e-19!20;CL:0002567!1.69e-16!3;CL:0002586!4.23e-16!3;CL:0000075!5.03e-14!27;CL:0000453!1.11e-09!5;CL:0002322!3.55e-09!5;CL:0002274!4.33e-09!5;CL:0000457!4.33e-09!5;CL:0002191!4.33e-09!5;CL:0000097!4.33e-09!5;CL:0000831!4.33e-09!5;CL:0002028!4.33e-09!5;CL:0000221!5.88e-09!71;CL:0000333!3.30e-08!41 | |ontology_enrichment_celltype=CL:0000147!7.53e-51!14;CL:0000148!1.25e-40!10;CL:0000541!1.25e-40!10;CL:0000325!1.24e-22!39;CL:0000149!5.00e-21!4;CL:0002077!9.53e-20!33;CL:0000710!1.66e-19!20;CL:0002567!1.69e-16!3;CL:0002586!4.23e-16!3;CL:0000075!5.03e-14!27;CL:0000453!1.11e-09!5;CL:0002322!3.55e-09!5;CL:0002274!4.33e-09!5;CL:0000457!4.33e-09!5;CL:0002191!4.33e-09!5;CL:0000097!4.33e-09!5;CL:0000831!4.33e-09!5;CL:0002028!4.33e-09!5;CL:0000221!5.88e-09!71;CL:0000333!3.30e-08!41 | ||
|ontology_enrichment_celltype_v019=CL:0000147;1.56e-64;14!CL:0000148;3.93e-45;10!CL:0000149;9.55e-37;4!CL:0002567;1.56e-28;3!CL:0002586;8.22e-28;3!CL:0000710;2.96e-22;20!CL:0000453;1.17e-16;5!CL:0000075;2.64e-16;27!CL:0002077;1.18e-14;34!CL:0002566;8.14e-11;1!CL:0000990;1.66e-09;8!CL:0000451;7.20e-08;10 | |ontology_enrichment_celltype_v019=CL:0000147;1.56e-64;14!CL:0000148;3.93e-45;10!CL:0000149;9.55e-37;4!CL:0002567;1.56e-28;3!CL:0002586;8.22e-28;3!CL:0000710;2.96e-22;20!CL:0000453;1.17e-16;5!CL:0000075;2.64e-16;27!CL:0002077;1.18e-14;34!CL:0002566;8.14e-11;1!CL:0000990;1.66e-09;8!CL:0000451;7.20e-08;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.56e-64,14;CL:0000148,3.93e-45,10;CL:0000541,3.93e-45,10;CL:0000149,9.55e-37,4;CL:0002567,1.56e-28,3;CL:0002586,8.22e-28,3;CL:0000710,2.96e-22,20;CL:0000453,1.20e-16,5;CL:0002077,1.71e-16,34;CL:0000075,2.64e-16,27;CL:0002566,8.14e-11,1;CL:0000333,5.84e-10,41;CL:0000990,1.68e-09,8;CL:0000451,7.29e-08,10;CL:0000221,5.03e-07,72;CL:0000133,8.61e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0004874;4.33e-10;1 | |ontology_enrichment_development_v019=UBERON:0004874;4.33e-10;1 | ||
|ontology_enrichment_disease=DOID:1909!1.72e-11!2 | |ontology_enrichment_disease=DOID:1909!1.72e-11!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;1.80e-19;2 | |ontology_enrichment_disease_v019=DOID:1909;1.80e-19;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,1.80e-19,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000966;2.77e-29;5!UBERON:0005388;2.77e-29;5!UBERON:0001802;2.77e-29;5!UBERON:0001781;8.22e-28;3!UBERON:0001782;8.22e-28;3!UBERON:0010371;5.86e-13;31!UBERON:0000970;2.99e-11;20!UBERON:0002104;1.04e-10;21!UBERON:0007029;3.61e-10;1!UBERON:0000989;4.33e-10;1!UBERON:0008811;4.33e-10;1!UBERON:0001003;7.75e-10;15!UBERON:0007376;7.75e-10;15!UBERON:0000020;9.14e-10;23!UBERON:0001032;2.37e-09;24!UBERON:0004456;2.37e-09;24!UBERON:0007625;5.34e-08;11!UBERON:0000019;7.18e-08;19!UBERON:0000047;7.18e-08;19!UBERON:0004088;7.18e-08;19!UBERON:0010230;7.18e-08;19!UBERON:0001456;3.92e-07;21 | |ontology_enrichment_uberon_v019=UBERON:0000966;2.77e-29;5!UBERON:0005388;2.77e-29;5!UBERON:0001802;2.77e-29;5!UBERON:0001781;8.22e-28;3!UBERON:0001782;8.22e-28;3!UBERON:0010371;5.86e-13;31!UBERON:0000970;2.99e-11;20!UBERON:0002104;1.04e-10;21!UBERON:0007029;3.61e-10;1!UBERON:0000989;4.33e-10;1!UBERON:0008811;4.33e-10;1!UBERON:0001003;7.75e-10;15!UBERON:0007376;7.75e-10;15!UBERON:0000020;9.14e-10;23!UBERON:0001032;2.37e-09;24!UBERON:0004456;2.37e-09;24!UBERON:0007625;5.34e-08;11!UBERON:0000019;7.18e-08;19!UBERON:0000047;7.18e-08;19!UBERON:0004088;7.18e-08;19!UBERON:0010230;7.18e-08;19!UBERON:0001456;3.92e-07;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,8.22e-28,3;UBERON:0005424,8.22e-28,3;UBERON:0000966,1.84e-24,6;UBERON:0005388,1.84e-24,6;UBERON:0001802,1.84e-24,6;UBERON:0001781,4.95e-21,4;UBERON:0000970,1.04e-10,21;UBERON:0002104,1.04e-10,21;UBERON:0007029,3.61e-10,1;UBERON:0000989,3.96e-10,1;UBERON:0008811,3.96e-10,1;UBERON:0006258,3.96e-10,1;UBERON:0005876,3.96e-10,1;UBERON:0004874,3.96e-10,1;UBERON:0001003,7.75e-10,15;UBERON:0007376,7.75e-10,15;UBERON:0007383,7.75e-10,15;UBERON:0000020,2.37e-09,24;UBERON:0001032,2.37e-09,24;UBERON:0004456,2.37e-09,24;UBERON:0007625,5.34e-08,11;UBERON:0000019,1.75e-07,20;UBERON:0000047,1.75e-07,20;UBERON:0010312,1.75e-07,20;UBERON:0004088,1.75e-07,20;UBERON:0010230,1.75e-07,20;UBERON:0003072,1.75e-07,20;UBERON:0004128,1.75e-07,20;UBERON:0003071,1.75e-07,20;UBERON:0001456,8.17e-07,22 | |||
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|short_description=p1@TYR | |short_description=p1@TYR | ||
}} | }} |
Latest revision as of 00:06, 25 September 2015
Short description: | p1@TYR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TYR_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_NM_000372, uc001pcs.2_5end |
EntrezGene: | TYR |
HGNC: | 12442 |
UniProt: | P14679 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.56e-64 | 14 |
melanocyte | 3.93e-45 | 10 |
melanoblast | 3.93e-45 | 10 |
visual pigment cell | 9.55e-37 | 4 |
light melanocyte | 1.56e-28 | 3 |
retinal pigment epithelial cell | 8.22e-28 | 3 |
neurecto-epithelial cell | 2.96e-22 | 20 |
Langerhans cell | 1.20e-16 | 5 |
ecto-epithelial cell | 1.71e-16 | 34 |
columnar/cuboidal epithelial cell | 2.64e-16 | 27 |
dark melanocyte | 8.14e-11 | 1 |
migratory neural crest cell | 5.84e-10 | 41 |
conventional dendritic cell | 1.68e-09 | 8 |
dendritic cell | 7.29e-08 | 10 |
ectodermal cell | 5.03e-07 | 72 |
neurectodermal cell | 8.61e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 8.22e-28 | 3 |
presumptive retinal pigmented epithelium | 8.22e-28 | 3 |
retina | 1.84e-24 | 6 |
photoreceptor array | 1.84e-24 | 6 |
posterior segment of eyeball | 1.84e-24 | 6 |
layer of retina | 4.95e-21 | 4 |
eye | 1.04e-10 | 21 |
visual system | 1.04e-10 | 21 |
surface | 3.61e-10 | 1 |
penis | 3.96e-10 | 1 |
intromittent organ | 3.96e-10 | 1 |
lateral plate mesenchyme | 3.96e-10 | 1 |
undifferentiated genital tubercle | 3.96e-10 | 1 |
somatopleure | 3.96e-10 | 1 |
skin epidermis | 7.75e-10 | 15 |
outer epithelium | 7.75e-10 | 15 |
enveloping layer of ectoderm | 7.75e-10 | 15 |
sense organ | 2.37e-09 | 24 |
sensory system | 2.37e-09 | 24 |
entire sense organ system | 2.37e-09 | 24 |
pigment epithelium of eye | 5.34e-08 | 11 |
camera-type eye | 1.75e-07 | 20 |
simple eye | 1.75e-07 | 20 |
immature eye | 1.75e-07 | 20 |
ocular region | 1.75e-07 | 20 |
eyeball of camera-type eye | 1.75e-07 | 20 |
optic cup | 1.75e-07 | 20 |
optic vesicle | 1.75e-07 | 20 |
eye primordium | 1.75e-07 | 20 |
face | 8.17e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.80e-19 | 2 |