FFCP PHASE1:Hg19::chr1:216596783..216596796,-: Difference between revisions
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|id=chr1:216596783..216596796,-
|short_description=p1@USH2A
|description=CAGE_peak_1_at_USH2A_5end
|association_with_transcript=-45bp_to_ENST00000307340,ENST0000036...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7399 | |EntrezGene=7399 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12601 | |HGNC=12601 | ||
|TSSclassifier=strong | |||
|UniProt=O75445 | |UniProt=O75445 | ||
|association_with_transcript=-45bp_to_ENST00000307340,ENST00000366942,ENST00000366943,NM_007123,NM_206933,uc001hku.1,uc001hkv.2_5end | |||
|cluster_id=chr1:216596783..216596796,- | |||
|coexpression_cluster_id=C171 | |||
|description=CAGE_peak_1_at_USH2A_5end | |||
|id=chr1:216596783..216596796,- | |||
|ontology_enrichment_celltype=CL:0000242!1.22e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000123;8.70e-23;2!CL:0000242;8.70e-23;2!CL:0002553;6.97e-12;1!CL:0000312;1.10e-09;5!CL:0000095;2.60e-09;17!CL:0000240;3.27e-08;6!CL:0000311;3.27e-08;6!CL:0000079;3.27e-08;6!CL:0000237;3.27e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,8.70e-23,2;CL:0002553,6.97e-12,1;CL:0000312,1.10e-09,5;CL:0000095,2.60e-09,17;CL:0000123,2.60e-09,17;CL:0000240,3.27e-08,6;CL:0000311,3.27e-08,6;CL:0000079,3.27e-08,6;CL:0000237,3.27e-08,6;CL:0000036,3.27e-08,6;CL:0000357,3.27e-08,6;CL:0000114,3.27e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.22e-15;3!CL:0000357;3.27e-08;6!CL:0000114;3.27e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;2.19e-11;4!DOID:1325;7.09e-07;7!DOID:3904;7.09e-07;7!DOID:1324;7.89e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.13e-11,4;DOID:1325,6.98e-07,7;DOID:3904,6.98e-07,7;DOID:1324,7.81e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.06e-24!57;UBERON:0005068!3.06e-24!57;UBERON:0006241!3.06e-24!57;UBERON:0007135!3.06e-24!57;UBERON:0002780!1.53e-23!41;UBERON:0001890!1.53e-23!41;UBERON:0006240!1.53e-23!41;UBERON:0000955!6.76e-23!69;UBERON:0006238!6.76e-23!69;UBERON:0003080!6.99e-23!42;UBERON:0005743!1.16e-22!86;UBERON:0001017!4.94e-22!82;UBERON:0000073!1.11e-21!94;UBERON:0001016!1.11e-21!94;UBERON:0007023!3.07e-21!115;UBERON:0003075!4.24e-21!86;UBERON:0007284!4.24e-21!86;UBERON:0002616!5.27e-21!59;UBERON:0003056!1.97e-20!61;UBERON:0002346!7.25e-20!90;UBERON:0002619!1.57e-17!22;UBERON:0001893!5.28e-17!34;UBERON:0001950!2.65e-16!20;UBERON:0001869!7.49e-16!32;UBERON:0000153!2.94e-15!129;UBERON:0007811!2.94e-15!129;UBERON:0000956!3.32e-15!25;UBERON:0000203!3.32e-15!25;UBERON:0002791!3.70e-15!33;UBERON:0003296!3.82e-15!4;UBERON:0010133!3.82e-15!4;UBERON:0002020!8.26e-15!34;UBERON:0003528!8.26e-15!34;UBERON:0000033!7.20e-14!123;UBERON:0004121!3.89e-13!169;UBERON:0000924!1.18e-12!173;UBERON:0006601!1.18e-12!173;UBERON:0000200!5.19e-09!6;UBERON:0001894!1.22e-08!7;UBERON:0006222!1.22e-08!7;UBERON:0001905!1.41e-08!2;UBERON:0002757!1.41e-08!2;UBERON:0010134!1.41e-08!2;UBERON:0002784!1.41e-08!2;UBERON:0005408!1.41e-08!2;UBERON:0001899!1.41e-08!2;UBERON:0000483!2.27e-08!309;UBERON:0000007!2.88e-08!2;UBERON:0000119!3.34e-08!312;UBERON:0000025!3.97e-07!194;UBERON:0000064!7.07e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;2.05e-42;4!UBERON:0010133;2.05e-42;4!UBERON:0001894;2.06e-24;7!UBERON:0001905;1.34e-22;2!UBERON:0002757;1.34e-22;2!UBERON:0010134;1.34e-22;2!UBERON:0005408;1.34e-22;2!UBERON:0001899;1.34e-22;2!UBERON:0000007;1.14e-21;2!UBERON:0002784;8.65e-12;4!UBERON:0000966;1.69e-09;5!UBERON:0005388;1.69e-09;5!UBERON:0001802;1.69e-09;5!UBERON:0000970;1.10e-08;20!UBERON:0002104;2.80e-08;21!UBERON:0000020;1.42e-07;23!UBERON:0001032;2.90e-07;24!UBERON:0004456;2.90e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,2.05e-42,4;UBERON:0010133,2.05e-42,4;UBERON:0001894,2.06e-24,7;UBERON:0006222,2.06e-24,7;UBERON:0001905,1.34e-22,2;UBERON:0002757,1.34e-22,2;UBERON:0010134,1.34e-22,2;UBERON:0005408,1.34e-22,2;UBERON:0001899,1.34e-22,2;UBERON:0000007,1.14e-21,2;UBERON:0002784,8.65e-12,4;UBERON:0000970,2.85e-08,21;UBERON:0002104,2.85e-08,21;UBERON:0000966,4.66e-08,6;UBERON:0005388,4.66e-08,6;UBERON:0001802,4.66e-08,6;UBERON:0003056,1.17e-07,61;UBERON:0000020,2.95e-07,24;UBERON:0001032,2.95e-07,24;UBERON:0004456,2.95e-07,24;UBERON:0010371,5.18e-07,104 | |||
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| ||
|short_description=p1@USH2A | |||
}} | }} |
Latest revision as of 03:19, 25 September 2015
Short description: | p1@USH2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_USH2A_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | -45bp_to_ENST00000307340, ENST00000366942, ENST00000366943, NM_007123, NM_206933, uc001hku.1, uc001hkv.2_5end |
EntrezGene: | USH2A |
HGNC: | 12601 |
UniProt: | O75445 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 8.70e-23 | 2 |
lung fibroblast | 6.97e-12 | 1 |
keratinocyte | 1.10e-09 | 5 |
neuron associated cell | 2.60e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 2.60e-09 | 17 |
stratified squamous epithelial cell | 3.27e-08 | 6 |
keratin accumulating cell | 3.27e-08 | 6 |
stratified epithelial cell | 3.27e-08 | 6 |
keratinizing barrier epithelial cell | 3.27e-08 | 6 |
epithelial fate stem cell | 3.27e-08 | 6 |
stratified epithelial stem cell | 3.27e-08 | 6 |
surface ectodermal cell | 3.27e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 2.05e-42 | 4 |
neuroendocrine gland | 2.05e-42 | 4 |
diencephalon | 2.06e-24 | 7 |
future diencephalon | 2.06e-24 | 7 |
pineal body | 1.34e-22 | 2 |
regional part of epithalamus | 1.34e-22 | 2 |
secretory circumventricular organ | 1.34e-22 | 2 |
circumventricular organ | 1.34e-22 | 2 |
epithalamus | 1.34e-22 | 2 |
pituitary gland | 1.14e-21 | 2 |
regional part of diencephalon | 8.65e-12 | 4 |
eye | 2.85e-08 | 21 |
visual system | 2.85e-08 | 21 |
retina | 4.66e-08 | 6 |
photoreceptor array | 4.66e-08 | 6 |
posterior segment of eyeball | 4.66e-08 | 6 |
pre-chordal neural plate | 1.17e-07 | 61 |
sense organ | 2.95e-07 | 24 |
sensory system | 2.95e-07 | 24 |
entire sense organ system | 2.95e-07 | 24 |
ecto-epithelium | 5.18e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.13e-11 | 4 |
bronchus cancer | 6.98e-07 | 7 |
bronchogenic carcinoma | 6.98e-07 | 7 |
lung cancer | 7.81e-07 | 15 |