FFCP PHASE1:Hg19::chr8:116681275..116681290,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7227 | |EntrezGene=7227 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12340 | |HGNC=12340 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UHF7 | |UniProt=Q9UHF7 | ||
|association_with_transcript=-47bp_to_ENST00000395715,NM_014112,uc003yny.2,uc003ynz.2,uc010mcy.2_5end | |association_with_transcript=-47bp_to_ENST00000395715,NM_014112,uc003yny.2,uc003ynz.2,uc010mcy.2_5end | ||
|cluster_id=chr8:116681275..116681290,- | |||
|description=CAGE_peak_11_at_TRPS1_5end | |description=CAGE_peak_11_at_TRPS1_5end | ||
|id=chr8:116681275..116681290,- | |id=chr8:116681275..116681290,- | ||
Latest revision as of 06:44, 25 September 2015
| Short description: | p11@TRPS1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_11_at_TRPS1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -47bp_to_ENST00000395715, NM_014112, uc003yny.2, uc003ynz.2, uc010mcy.2_5end |
| EntrezGene: | TRPS1 |
| HGNC: | 12340 |
| UniProt: | Q9UHF7 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p11@TRPS1 |
|---|
0
2
4
6
8
10
12
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 8.42e-30 | 56 |
| neural rod | 8.42e-30 | 56 |
| future spinal cord | 8.42e-30 | 56 |
| neural keel | 8.42e-30 | 56 |
| regional part of nervous system | 2.62e-26 | 53 |
| regional part of brain | 2.62e-26 | 53 |
| central nervous system | 1.67e-22 | 81 |
| nervous system | 7.53e-22 | 89 |
| neural plate | 1.89e-21 | 82 |
| presumptive neural plate | 1.89e-21 | 82 |
Showing 1 to 10 of 50 entries
