FFCP PHASE1:Mm9::chr17:29405763..29405774,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=80748 | |EntrezGene=80748 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q99KU6 | |UniProt=Q99KU6 | ||
|association_with_transcript=-13bp_to_ENSMUST00000120346_5end | |association_with_transcript=-13bp_to_ENSMUST00000120346_5end | ||
|cluster_id=chr17:29405763..29405774,+ | |||
|description=CAGE_peak_2_at_BC004004_5end | |description=CAGE_peak_2_at_BC004004_5end | ||
|id=chr17:29405763..29405774,+ | |id=chr17:29405763..29405774,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.91e-10!52;UBERON:0005068!5.91e-10!52;UBERON:0006241!5.91e-10!52;UBERON:0007135!5.91e-10!52;UBERON:0002616!6.21e-08!49;UBERON:0000955!7.84e-08!50;UBERON:0006238!7.84e-08!50;UBERON:0002020!2.02e-07!34;UBERON:0000033!2.91e-07!63;UBERON:0000073!3.89e-07!75;UBERON:0001016!3.89e-07!75;UBERON:0003080!7.40e-07!40;UBERON:0001017!7.82e-07!73;UBERON:0005743!7.82e-07!73 | |ontology_enrichment_uberon=UBERON:0001049!5.91e-10!52;UBERON:0005068!5.91e-10!52;UBERON:0006241!5.91e-10!52;UBERON:0007135!5.91e-10!52;UBERON:0002616!6.21e-08!49;UBERON:0000955!7.84e-08!50;UBERON:0006238!7.84e-08!50;UBERON:0002020!2.02e-07!34;UBERON:0000033!2.91e-07!63;UBERON:0000073!3.89e-07!75;UBERON:0001016!3.89e-07!75;UBERON:0003080!7.40e-07!40;UBERON:0001017!7.82e-07!73;UBERON:0005743!7.82e-07!73 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,5.69e-10,52;UBERON:0005068,5.69e-10,52;UBERON:0006241,5.69e-10,52;UBERON:0007135,5.69e-10,52;UBERON:0000073,9.68e-10,54;UBERON:0010314,1.05e-08,92;UBERON:0010371,4.00e-08,73;UBERON:0002616,6.51e-08,46;UBERON:0000955,8.36e-08,47;UBERON:0006238,8.36e-08,47;UBERON:0002020,1.96e-07,34;UBERON:0004121,2.09e-07,95;UBERON:0000924,2.09e-07,95;UBERON:0006601,2.09e-07,95;UBERON:0002346,2.16e-07,64;UBERON:0003075,2.16e-07,64;UBERON:0007284,2.16e-07,64;UBERON:0001016,3.80e-07,75;UBERON:0001017,7.65e-07,73;UBERON:0003080,8.31e-07,40 | |||
|phase1_expression=1.76163731815273,2.79180326111489,3.63999391511629,1.20985684522732,1.50268718983904,1.17515490338323,0.934450562382103,2.1950964985068,0.140788722151667,0.468129052643987,0.856089841127525,0.319088635981346,0.856003649656029,0.699363219351979,2.33176833270964,3.23960427823721,4.89693314689703,2.68142840554502,2.60517423850904,1.27316895539409,3.57181818634493,2.6808556824239,4.17919662622297,3.19984845586813,1.83527424853736,1.14846392823004,3.4460959692726,2.80112602491656,3.6104449696711,3.78045194639896,3.76941868114018,2.54012269383853,1.84519436275371,0,1.1554064790051,2.32728503501889,3.06254034393554,4.18531630736908,2.3440060335714,3.66466620781659,3.52938892818609,4.09827290975067,2.91306211818692,2.14024590558481,1.72340783073175,2.38610777810186,4.69434806608824,0.218025156380447,2.85592037554813,1.94429899074283,1.53985063787899,1.43752564364972,2.18117387875057,0.725362142011344,0,3.8588915405392,1.71920063963254,4.12537673821954,3.03474691289397,2.11596391708813,3.1691570175309,2.03306719241479,1.77858959222228,4.49949858640699,3.9554654502679,4.2628806896766,3.89480143673926,4.99483796918021,1.45165457231869,2.16009501330705,1.68259969081106,5.71301968807607,5.30084498283872,1.95985278743926,2.30029130443767,1.83843757322004,1.10115880999389,4.97980618532232,3.07213066512487,2.2420668914133,2.10421580285542,2.08365348222704,5.02529398202486,2.8138130501584,2.75036845998258,4.71405736757868,3.70166370077668,3.16879057903011,2.87759534666099,3.09843396437821,1.44932244350839,1.72084775396277,0.679971333707751,3.77792234146472,1.29955283489534,1.34408066129201,2.94933282276679,1.87473354835864,1.55871602761721,6.36011234118612,3.80277233397037,6.41632387071589,5.09610479413291,0,2.59789249213457,1.77351905832569,3.53867111510348,2.2836775943812,0.776813650941515,1.92974780784272,1.90833859442749,1.52232739156071,1.84492397804847,1.80867168663147,1.88141931417128,2.01066546127481,0.494389935468748,2.74738778147832,4.42305275974937,2.91180329905337,3.3126227769059,1.45462575940567,1.86391761218122,9.07620470735796,10.0534419270458,2.29911349687732,2.75574786363617,4.19931911695385,2.03312363316904,3.74476598512057,4.11750542536764,8.16753288733619,4.51943232499919,7.41574826257959,4.36354893575076,5.353961681236,2.34230536855727,1.49288364732112,2.77995034277042,5.47148825304832,0.520481771850815,1.60931473103431,1.62055916824814,1.80845781402858,2.51735046859913,0.768682321709099,2.81105173679186,3.10444044886819,0.862271971731369,0.567318240503458,1.05570674498369,2.84954452155847,1.11218899690239,1.39300866608867,2.46938563689532,1.19420560091096,2.1066395619397,2.31613116403244,1.13665399758237,1.24275463521301,2.11073453982987,2.88099298337624,2.3674473558521,1.57411385397923,1.85120535464854,2.55787339225449,2.95100741539581,2.80236821681207,6.91151369636618,5.25335885053105,5.75588547775576,6.57899943413995,4.17145219052996,6.97873377553933,4.83666881697493,4.21908910755066,1.32167513193519,2.3800550999719,1.49301775374664,1.16118335930219,1.28867461322093,0.605050573870028,2.2237804384487,1.52180500890047,2.37264530772256,1.64698954724011,2.76468729680296,1.39269530428806,3.70431765526328,4.49409704327111,1.72910439899755,2.58883655230677,0.758671603812327,1.71372768914593,1.1270773567308,1.62921062276251,2.32742984601151,2.59502533594179,3.66771915320692,5.90440591918409,6.59394656933774,6.54004968785543,0.592905254174298,1.00107063429656,0.786235980452812,1.57403478669398,1.82574109249653,0.241177159752417,2.5462585178142,1.72617682470486,1.45921704097532,3.84385978463314,0,1.11642284300551,0.936113019343682,2.27320990152401,3.04975602987251,1.4473305640901,1.10851914099963,1.13694847062291,1.62964976442026,1.52770577197669,0.469380496577004,2.34508760418542,1.90434912708811,2.34160377429359,1.10344600874334,1.55025282754142,1.43509291791738,1.80249646187312,1.55416483679306,1.44649058581512,3.01582567878545,3.80733978673097,4.42587845717133,1.65562047782839,2.56880943980467,4.33683240391152,2.62295912602681,3.02965112645248,1.26203287766503,1.17131623288992,1.93881057959519,1.91175038362042,1.55959071857676,1.69845918473299,1.61924280669958,1.16902343164525,1.18586333383957,2.24924921495265,1.56134093729095,1.95872164033981,2.93196526836437,0.824850614862677,3.98235415019888,0.728341908464944,3.32555912661226,5.09233715340925,3.54362271456927,6.7635732547664,3.35956781118687,3.99887102425256,2.49548164869305,5.05658812697306,7.37930260024991,6.18813259489121,4.42571487479924,0.900305470156551,1.16422815404479,2.57204442037911,2.48276327099183,2.85390108163313,4.44282355625727,7.00269382963578,0.23467170806371,0.847328283455281,2.42581237860458,2.14352128823924,2.74489525383039,2.47282992205439,4.53614907211919,3.61109979439135,2.62332752966866,3.52308073819968,1.02522528478712,0.619160603889667,0.740778109478847,1.69531611304222,1.6403307326523,2.28778173206523,4.41943917984024,3.07893195112048,3.04039942369732,4.77335309007557,0.316335993581135,0.609958401380546,1.40406943068342,1.88179466413022,3.05707589244649,3.37160865962052,2.23164330458407,2.87931536182433,1.8146096260851,8.69875038321696,0.56369293868419,0.897099276263873,0.330916980914195,1.36115831840833,1.93739735216597,1.68956125490778,1.76035857968631,0.781226309063701,2.30690557736564,0.966336483304024,2.30424005006292,0.948033361884535,2.02725215290164,1.33524244314275,1.42912905275575,0.537080087002444,0.993406773906324,1.56254084375959,2.06765338044408,1.71642964911851,2.13379058634,0.806609481094724,1.36441033035653,1.34696578296461,1.98690733708667,3.17422537061296,0.443971906748129,0.897138566094757,0.167884616364078,2.89784391048286,2.064507229963,1.64836461840539,1.50057865355346,3.00943262421218,5.0827665835536,9.20650473014354,7.44764167471216,8.248952752497,4.11049511862385,5.2877572817279,4.72515750162264,4.95353323546643,5.89085131679466,3.62432218226274,0.415149390336707,0,1.02440163452481,1.94485373654635,1.25767897576789,0.551530525350042,3.55594764482584,2.26638562962784,0.962757628775446,1.76888048234658,2.78827229879264,1.50901073108861,2.34103768674706,2.30490548657529,2.23998328926892,2.85776214769844,2.78122382267653,3.27945674788299,2.88460130562315,1.61918812147837,2.40008476669791,2.8396128985494,2.38436189947321,1.59881058295561,2.07040636913727,2.96151127620868,1.82927972872773,1.57841826862706,2.30866993537965,2.24456908663095,2.25406534435931,2.85662998889134,2.86461730218783,2.78886314134739,2.50778594275484,2.24829520144151,2.33931608445408,1.07435527024149,2.10417165275728,1.54413993383661,3.01428186306548 | |phase1_expression=1.76163731815273,2.79180326111489,3.63999391511629,1.20985684522732,1.50268718983904,1.17515490338323,0.934450562382103,2.1950964985068,0.140788722151667,0.468129052643987,0.856089841127525,0.319088635981346,0.856003649656029,0.699363219351979,2.33176833270964,3.23960427823721,4.89693314689703,2.68142840554502,2.60517423850904,1.27316895539409,3.57181818634493,2.6808556824239,4.17919662622297,3.19984845586813,1.83527424853736,1.14846392823004,3.4460959692726,2.80112602491656,3.6104449696711,3.78045194639896,3.76941868114018,2.54012269383853,1.84519436275371,0,1.1554064790051,2.32728503501889,3.06254034393554,4.18531630736908,2.3440060335714,3.66466620781659,3.52938892818609,4.09827290975067,2.91306211818692,2.14024590558481,1.72340783073175,2.38610777810186,4.69434806608824,0.218025156380447,2.85592037554813,1.94429899074283,1.53985063787899,1.43752564364972,2.18117387875057,0.725362142011344,0,3.8588915405392,1.71920063963254,4.12537673821954,3.03474691289397,2.11596391708813,3.1691570175309,2.03306719241479,1.77858959222228,4.49949858640699,3.9554654502679,4.2628806896766,3.89480143673926,4.99483796918021,1.45165457231869,2.16009501330705,1.68259969081106,5.71301968807607,5.30084498283872,1.95985278743926,2.30029130443767,1.83843757322004,1.10115880999389,4.97980618532232,3.07213066512487,2.2420668914133,2.10421580285542,2.08365348222704,5.02529398202486,2.8138130501584,2.75036845998258,4.71405736757868,3.70166370077668,3.16879057903011,2.87759534666099,3.09843396437821,1.44932244350839,1.72084775396277,0.679971333707751,3.77792234146472,1.29955283489534,1.34408066129201,2.94933282276679,1.87473354835864,1.55871602761721,6.36011234118612,3.80277233397037,6.41632387071589,5.09610479413291,0,2.59789249213457,1.77351905832569,3.53867111510348,2.2836775943812,0.776813650941515,1.92974780784272,1.90833859442749,1.52232739156071,1.84492397804847,1.80867168663147,1.88141931417128,2.01066546127481,0.494389935468748,2.74738778147832,4.42305275974937,2.91180329905337,3.3126227769059,1.45462575940567,1.86391761218122,9.07620470735796,10.0534419270458,2.29911349687732,2.75574786363617,4.19931911695385,2.03312363316904,3.74476598512057,4.11750542536764,8.16753288733619,4.51943232499919,7.41574826257959,4.36354893575076,5.353961681236,2.34230536855727,1.49288364732112,2.77995034277042,5.47148825304832,0.520481771850815,1.60931473103431,1.62055916824814,1.80845781402858,2.51735046859913,0.768682321709099,2.81105173679186,3.10444044886819,0.862271971731369,0.567318240503458,1.05570674498369,2.84954452155847,1.11218899690239,1.39300866608867,2.46938563689532,1.19420560091096,2.1066395619397,2.31613116403244,1.13665399758237,1.24275463521301,2.11073453982987,2.88099298337624,2.3674473558521,1.57411385397923,1.85120535464854,2.55787339225449,2.95100741539581,2.80236821681207,6.91151369636618,5.25335885053105,5.75588547775576,6.57899943413995,4.17145219052996,6.97873377553933,4.83666881697493,4.21908910755066,1.32167513193519,2.3800550999719,1.49301775374664,1.16118335930219,1.28867461322093,0.605050573870028,2.2237804384487,1.52180500890047,2.37264530772256,1.64698954724011,2.76468729680296,1.39269530428806,3.70431765526328,4.49409704327111,1.72910439899755,2.58883655230677,0.758671603812327,1.71372768914593,1.1270773567308,1.62921062276251,2.32742984601151,2.59502533594179,3.66771915320692,5.90440591918409,6.59394656933774,6.54004968785543,0.592905254174298,1.00107063429656,0.786235980452812,1.57403478669398,1.82574109249653,0.241177159752417,2.5462585178142,1.72617682470486,1.45921704097532,3.84385978463314,0,1.11642284300551,0.936113019343682,2.27320990152401,3.04975602987251,1.4473305640901,1.10851914099963,1.13694847062291,1.62964976442026,1.52770577197669,0.469380496577004,2.34508760418542,1.90434912708811,2.34160377429359,1.10344600874334,1.55025282754142,1.43509291791738,1.80249646187312,1.55416483679306,1.44649058581512,3.01582567878545,3.80733978673097,4.42587845717133,1.65562047782839,2.56880943980467,4.33683240391152,2.62295912602681,3.02965112645248,1.26203287766503,1.17131623288992,1.93881057959519,1.91175038362042,1.55959071857676,1.69845918473299,1.61924280669958,1.16902343164525,1.18586333383957,2.24924921495265,1.56134093729095,1.95872164033981,2.93196526836437,0.824850614862677,3.98235415019888,0.728341908464944,3.32555912661226,5.09233715340925,3.54362271456927,6.7635732547664,3.35956781118687,3.99887102425256,2.49548164869305,5.05658812697306,7.37930260024991,6.18813259489121,4.42571487479924,0.900305470156551,1.16422815404479,2.57204442037911,2.48276327099183,2.85390108163313,4.44282355625727,7.00269382963578,0.23467170806371,0.847328283455281,2.42581237860458,2.14352128823924,2.74489525383039,2.47282992205439,4.53614907211919,3.61109979439135,2.62332752966866,3.52308073819968,1.02522528478712,0.619160603889667,0.740778109478847,1.69531611304222,1.6403307326523,2.28778173206523,4.41943917984024,3.07893195112048,3.04039942369732,4.77335309007557,0.316335993581135,0.609958401380546,1.40406943068342,1.88179466413022,3.05707589244649,3.37160865962052,2.23164330458407,2.87931536182433,1.8146096260851,8.69875038321696,0.56369293868419,0.897099276263873,0.330916980914195,1.36115831840833,1.93739735216597,1.68956125490778,1.76035857968631,0.781226309063701,2.30690557736564,0.966336483304024,2.30424005006292,0.948033361884535,2.02725215290164,1.33524244314275,1.42912905275575,0.537080087002444,0.993406773906324,1.56254084375959,2.06765338044408,1.71642964911851,2.13379058634,0.806609481094724,1.36441033035653,1.34696578296461,1.98690733708667,3.17422537061296,0.443971906748129,0.897138566094757,0.167884616364078,2.89784391048286,2.064507229963,1.64836461840539,1.50057865355346,3.00943262421218,5.0827665835536,9.20650473014354,7.44764167471216,8.248952752497,4.11049511862385,5.2877572817279,4.72515750162264,4.95353323546643,5.89085131679466,3.62432218226274,0.415149390336707,0,1.02440163452481,1.94485373654635,1.25767897576789,0.551530525350042,3.55594764482584,2.26638562962784,0.962757628775446,1.76888048234658,2.78827229879264,1.50901073108861,2.34103768674706,2.30490548657529,2.23998328926892,2.85776214769844,2.78122382267653,3.27945674788299,2.88460130562315,1.61918812147837,2.40008476669791,2.8396128985494,2.38436189947321,1.59881058295561,2.07040636913727,2.96151127620868,1.82927972872773,1.57841826862706,2.30866993537965,2.24456908663095,2.25406534435931,2.85662998889134,2.86461730218783,2.78886314134739,2.50778594275484,2.24829520144151,2.33931608445408,1.07435527024149,2.10417165275728,1.54413993383661,3.01428186306548 | ||
|short_description=p2@BC004004 | |short_description=p2@BC004004 | ||
}} | }} |
Latest revision as of 04:57, 26 September 2015
Short description: | p2@BC004004 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_BC004004_5end |
Coexpression cluster: | NA |
Association with transcript: | -13bp_to_ENSMUST00000120346_5end |
EntrezGene: | BC004004 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 5.69e-10 | 52 |
neural rod | 5.69e-10 | 52 |
future spinal cord | 5.69e-10 | 52 |
neural keel | 5.69e-10 | 52 |
regional part of nervous system | 9.68e-10 | 54 |
structure with developmental contribution from neural crest | 1.05e-08 | 92 |
ecto-epithelium | 4.00e-08 | 73 |
regional part of brain | 6.51e-08 | 46 |
brain | 8.36e-08 | 47 |
future brain | 8.36e-08 | 47 |
gray matter | 1.96e-07 | 34 |
ectoderm-derived structure | 2.09e-07 | 95 |
ectoderm | 2.09e-07 | 95 |
presumptive ectoderm | 2.09e-07 | 95 |
neurectoderm | 2.16e-07 | 64 |
neural plate | 2.16e-07 | 64 |
presumptive neural plate | 2.16e-07 | 64 |
nervous system | 3.80e-07 | 75 |
central nervous system | 7.65e-07 | 73 |
anterior neural tube | 8.31e-07 | 40 |