FFCP PHASE1:Mm9::chr4:140257437..140257463,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=108911 | |EntrezGene=108911 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3464 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BK67 | |UniProt=Q8BK67 | ||
|association_with_transcript=0bp_to_ENSMUST00000038893_5end | |association_with_transcript=0bp_to_ENSMUST00000038893_5end | ||
|cluster_id=chr4:140257437..140257463,+ | |||
|description=CAGE_peak_2_at_Rcc2_5end | |description=CAGE_peak_2_at_Rcc2_5end | ||
|id=chr4:140257437..140257463,+ | |id=chr4:140257437..140257463,+ | ||
|ontology_enrichment_celltype=CL:0000988!1.80e-13!32;CL:0002032!1.80e-13!32;CL:0000037!1.80e-13!32;CL:0000566!1.80e-13!32;CL:0000837!1.80e-13!32;CL:0002031!7.64e-10!25;CL:0002320!4.19e-08!46;CL:0000134!4.19e-08!46;CL:0000034!1.01e-07!97;CL:0000049!1.39e-07!19;CL:0000219!2.54e-07!54;CL:0000738!2.84e-07!17;CL:0002087!2.84e-07!17;CL:0000542!3.68e-07!13;CL:0000051!3.68e-07!13;CL:0000838!8.25e-07!12 | |ontology_enrichment_celltype=CL:0000988!1.80e-13!32;CL:0002032!1.80e-13!32;CL:0000037!1.80e-13!32;CL:0000566!1.80e-13!32;CL:0000837!1.80e-13!32;CL:0002031!7.64e-10!25;CL:0002320!4.19e-08!46;CL:0000134!4.19e-08!46;CL:0000034!1.01e-07!97;CL:0000049!1.39e-07!19;CL:0000219!2.54e-07!54;CL:0000738!2.84e-07!17;CL:0002087!2.84e-07!17;CL:0000542!3.68e-07!13;CL:0000051!3.68e-07!13;CL:0000838!8.25e-07!12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.80e-13,32;CL:0002032,1.80e-13,32;CL:0000037,1.80e-13,32;CL:0000837,1.80e-13,32;CL:0002031,7.64e-10,25;CL:0002320,4.22e-08,46;CL:0000134,4.22e-08,46;CL:0000034,1.02e-07,97;CL:0000049,1.39e-07,19;CL:0000219,2.56e-07,54;CL:0000738,2.84e-07,17;CL:0002087,2.84e-07,17;CL:0000542,3.68e-07,13;CL:0000051,3.68e-07,13;CL:0000838,8.25e-07,12 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.81e-17!45;UBERON:0003061!9.81e-17!45;UBERON:0002193!3.32e-15!48;UBERON:0004177!1.54e-12!29;UBERON:0000072!2.16e-11!27;UBERON:0002370!1.22e-10!23;UBERON:0000974!1.22e-10!23;UBERON:0004807!1.22e-10!23;UBERON:0005058!1.22e-10!23;UBERON:0003351!1.22e-10!23;UBERON:0009113!1.22e-10!23;UBERON:0003295!1.22e-10!23;UBERON:0009722!1.22e-10!23;UBERON:0005562!1.22e-10!23;UBERON:0007690!1.22e-10!23;UBERON:0006562!5.51e-10!24;UBERON:0001557!5.51e-10!24;UBERON:0001042!5.51e-10!24;UBERON:0008814!5.51e-10!24;UBERON:0009145!5.51e-10!24;UBERON:0003408!7.82e-10!24;UBERON:0002405!2.75e-08!70;UBERON:0000065!3.32e-08!41;UBERON:0002384!4.19e-08!46;UBERON:0001004!9.31e-08!42 | |ontology_enrichment_uberon=UBERON:0002390!9.81e-17!45;UBERON:0003061!9.81e-17!45;UBERON:0002193!3.32e-15!48;UBERON:0004177!1.54e-12!29;UBERON:0000072!2.16e-11!27;UBERON:0002370!1.22e-10!23;UBERON:0000974!1.22e-10!23;UBERON:0004807!1.22e-10!23;UBERON:0005058!1.22e-10!23;UBERON:0003351!1.22e-10!23;UBERON:0009113!1.22e-10!23;UBERON:0003295!1.22e-10!23;UBERON:0009722!1.22e-10!23;UBERON:0005562!1.22e-10!23;UBERON:0007690!1.22e-10!23;UBERON:0006562!5.51e-10!24;UBERON:0001557!5.51e-10!24;UBERON:0001042!5.51e-10!24;UBERON:0008814!5.51e-10!24;UBERON:0009145!5.51e-10!24;UBERON:0003408!7.82e-10!24;UBERON:0002405!2.75e-08!70;UBERON:0000065!3.32e-08!41;UBERON:0002384!4.19e-08!46;UBERON:0001004!9.31e-08!42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.81e-17,45;UBERON:0003061,9.81e-17,45;UBERON:0002193,3.32e-15,48;UBERON:0002405,3.32e-15,48;UBERON:0004177,1.54e-12,29;UBERON:0005057,1.54e-12,29;UBERON:0000072,2.16e-11,27;UBERON:0002370,1.22e-10,23;UBERON:0000974,1.22e-10,23;UBERON:0004807,1.22e-10,23;UBERON:0005058,1.22e-10,23;UBERON:0003351,1.22e-10,23;UBERON:0009113,1.22e-10,23;UBERON:0003295,1.22e-10,23;UBERON:0009722,1.22e-10,23;UBERON:0005562,1.22e-10,23;UBERON:0007690,1.22e-10,23;UBERON:0000153,1.90e-10,43;UBERON:0000077,4.16e-10,35;UBERON:0006562,5.51e-10,24;UBERON:0001557,5.51e-10,24;UBERON:0001042,5.51e-10,24;UBERON:0008814,5.51e-10,24;UBERON:0009145,5.51e-10,24;UBERON:0003408,7.82e-10,24;UBERON:0007811,1.56e-08,36;UBERON:0000065,3.32e-08,41;UBERON:0002384,4.22e-08,46;UBERON:0001004,9.31e-08,42 | |||
|phase1_expression=27.5456017020246,1.04692622291808,1.36499771816861,0.60492842261366,1.50268718983904,7.55456723603504,9.81173090501208,25.9537880117568,54.7668129169984,43.7700664222128,87.3211637950075,62.9402334473204,24.1393029203,23.1664066410343,24.3170126125434,29.3589137715248,41.2741508095607,22.7132759057931,18.921791837592,27.585327366872,8.1641558545027,48.0568203812285,36.5679704794509,7.03966660290989,8.02932483735095,1.14846392823004,4.73838195774982,4.74036711908956,2.47030445293286,3.78045194639896,7.09537634096975,55.2476685909879,59.0462196081187,15.8481681015439,6.06588401477677,9.14290549471708,6.73758875665818,2.92972141515835,7.0320181007142,1.57057123192139,3.52938892818609,1.36609096991689,1.45653105909346,4.78407908307194,5.77848507951233,9.17733760808408,10.9534788208725,19.6222640742402,9.66619204031676,6.22175677037707,12.5987779462826,21.5628846547457,41.2745210902031,34.8173828165445,29.5762543245368,8.48956138918625,12.8940047972441,6.18806510732931,20.0293296251002,19.0436752537932,13.3104594736298,19.9918273920788,8.00365316500025,19.3478439215501,23.7327927016074,19.1829631035447,25.4660093940644,35.348084089583,47.5935320495912,52.1122921960326,43.3269420383847,5.14171771926846,6.62605622854841,44.7091417134582,55.2069913065042,28.4957823849107,6.60695285996332,4.34136949489638,5.68344173048101,14.3756053625911,14.4550476891807,17.7110545989298,5.58365998002762,3.93933827022176,4.43114918552749,5.89257170947335,5.41012387036591,8.38797506213853,7.79979791331796,5.2144376473682,5.79728977403356,0.860423876981386,2.719885334831,0.539703191637817,0,0.896053774194671,5.75822122540183,11.5892619353079,13.5088722393492,10.6001872353102,20.4222958676187,16.6824420638613,5.09610479413291,14.2213340630666,39.8343515460634,39.5241390141154,34.3756622610053,4.11061966988616,6.99132285847364,2.3750742250372,19.7773272513395,8.8294988710521,7.37969591219387,5.72746034099966,5.05631440683531,4.64966387919799,3.70792451601561,1.01219549843938,13.2691582792481,8.7354098971601,18.1090045137523,15.5160081003271,1.86391761218122,2.34224637609238,2.09446706813455,3.32094171771169,93.5756122391237,41.9931911695385,73.7007317023775,2.39665023047716,3.20250421973039,7.91622418311046,2.08589184230732,2.30143911597297,3.32460871295296,4.05603157669394,11.4060087512354,17.2925689148029,3.0326731012041,2.94618598241064,30.1879427673473,20.921091503446,21.0672691872259,13.2620239695429,12.1104968489364,11.4021211053516,14.8048724804372,2.84573707812917,110.370812381615,53.1388085271572,37.1256871985932,28.2762494831572,16.9608822027615,12.537077994798,13.3758388665163,25.0783176191301,34.4084461783485,33.1978800177983,45.7503234026904,12.2204205795946,12.6644072389792,9.90341338035582,8.28606574548236,5.90292695242211,7.0962871928194,4.41814495025775,6.43856163359086,3.50296027101508,1.97471819896177,2.13417703302824,1.62137619091711,2.04679982395465,2.41505126820156,2.01309628140558,3.57492912559016,12.0398396483763,0.660837565967596,2.11560453330835,28.7939138222566,23.2236671860439,12.371276286921,9.07575860805041,7.11609740303585,6.27744566171445,2.37264530772256,4.44687177754829,4.77536896720512,3.38226002469956,5.06906626509712,3.59527763461689,3.45820879799511,3.38540164532424,29.9675283505869,25.5916668245793,22.5415471346161,15.6811522440892,15.1282939990748,11.3620028222316,6.26041717530147,3.09981310757165,2.04098346193787,2.71473760627961,0.296452627087149,36.8727683632568,27.9113773060748,33.2795926329584,25.7632354163399,22.9118301764796,18.0784354764808,16.3986798346962,14.4300351829781,12.3552635934637,7.18841032636773,7.44281895337007,3.43241440426017,2.27320990152401,1.97337154874103,2.41221760681684,4.80358294433172,30.3186258832776,23.7928865605358,20.5391553787978,18.5405296147917,13.7355131102289,11.1880511216426,9.75668239288994,8.03939234941574,6.2010113101657,6.218735977642,6.55453258862952,6.56202931090403,4.77341893318988,21.1107797514981,5.98296252200581,3.44234991113325,5.79467167239938,3.53211297973142,4.10240903072711,40.6558664534155,2.01976741763498,17.6684602873104,12.8844785617891,23.6965737506079,15.5329718669159,20.943075363745,16.1353622549635,16.5972387686707,20.1656541958805,15.4162233399144,7.71171159412337,7.80670468645477,14.4233138970477,10.2618784392753,5.1140738121486,2.65490276679926,18.4513283477786,16.0231485191318,7.16699303072413,8.85905678642318,5.53383266299069,6.46070732920553,7.99774204850512,5.70395805415554,4.74055136903724,7.37930260024991,14.4389760547462,7.14923172082955,27.5493473867905,28.0708343808577,23.7914108885067,17.2020026633005,19.9773075714319,12.6702745863633,17.6589670486468,11.2642419870581,13.9809166770121,5.07215315526412,6.10079135883476,15.339120536111,17.00824482974,28.1718731847402,26.2625439592098,4.66369338607761,4.45020724825223,19.4792804109552,28.4813877789247,27.4087900507173,32.2110061478022,31.7130608312778,24.936820879511,59.1524936378616,62.8382020933224,57.9057890240536,3.81868247206045,33.3734473228098,15.2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|phase1_expression=27.5456017020246,1.04692622291808,1.36499771816861,0.60492842261366,1.50268718983904,7.55456723603504,9.81173090501208,25.9537880117568,54.7668129169984,43.7700664222128,87.3211637950075,62.9402334473204,24.1393029203,23.1664066410343,24.3170126125434,29.3589137715248,41.2741508095607,22.7132759057931,18.921791837592,27.585327366872,8.1641558545027,48.0568203812285,36.5679704794509,7.03966660290989,8.02932483735095,1.14846392823004,4.73838195774982,4.74036711908956,2.47030445293286,3.78045194639896,7.09537634096975,55.2476685909879,59.0462196081187,15.8481681015439,6.06588401477677,9.14290549471708,6.73758875665818,2.92972141515835,7.0320181007142,1.57057123192139,3.52938892818609,1.36609096991689,1.45653105909346,4.78407908307194,5.77848507951233,9.17733760808408,10.9534788208725,19.6222640742402,9.66619204031676,6.22175677037707,12.5987779462826,21.5628846547457,41.2745210902031,34.8173828165445,29.5762543245368,8.48956138918625,12.8940047972441,6.18806510732931,20.0293296251002,19.0436752537932,13.3104594736298,19.9918273920788,8.00365316500025,19.3478439215501,23.7327927016074,19.1829631035447,25.4660093940644,35.348084089583,47.5935320495912,52.1122921960326,43.3269420383847,5.14171771926846,6.62605622854841,44.7091417134582,55.2069913065042,28.4957823849107,6.60695285996332,4.34136949489638,5.68344173048101,14.3756053625911,14.4550476891807,17.7110545989298,5.58365998002762,3.93933827022176,4.43114918552749,5.89257170947335,5.41012387036591,8.38797506213853,7.79979791331796,5.2144376473682,5.79728977403356,0.860423876981386,2.719885334831,0.539703191637817,0,0.896053774194671,5.75822122540183,11.5892619353079,13.5088722393492,10.6001872353102,20.4222958676187,16.6824420638613,5.09610479413291,14.2213340630666,39.8343515460634,39.5241390141154,34.3756622610053,4.11061966988616,6.99132285847364,2.3750742250372,19.7773272513395,8.8294988710521,7.37969591219387,5.72746034099966,5.05631440683531,4.64966387919799,3.70792451601561,1.01219549843938,13.2691582792481,8.7354098971601,18.1090045137523,15.5160081003271,1.86391761218122,2.34224637609238,2.09446706813455,3.32094171771169,93.5756122391237,41.9931911695385,73.7007317023775,2.39665023047716,3.20250421973039,7.91622418311046,2.08589184230732,2.30143911597297,3.32460871295296,4.05603157669394,11.4060087512354,17.2925689148029,3.0326731012041,2.94618598241064,30.1879427673473,20.921091503446,21.0672691872259,13.2620239695429,12.1104968489364,11.4021211053516,14.8048724804372,2.84573707812917,110.370812381615,53.1388085271572,37.1256871985932,28.2762494831572,16.9608822027615,12.537077994798,13.3758388665163,25.0783176191301,34.4084461783485,33.1978800177983,45.7503234026904,12.2204205795946,12.6644072389792,9.90341338035582,8.28606574548236,5.90292695242211,7.0962871928194,4.41814495025775,6.43856163359086,3.50296027101508,1.97471819896177,2.13417703302824,1.62137619091711,2.04679982395465,2.41505126820156,2.01309628140558,3.57492912559016,12.0398396483763,0.660837565967596,2.11560453330835,28.7939138222566,23.2236671860439,12.371276286921,9.07575860805041,7.11609740303585,6.27744566171445,2.37264530772256,4.44687177754829,4.77536896720512,3.38226002469956,5.06906626509712,3.59527763461689,3.45820879799511,3.38540164532424,29.9675283505869,25.5916668245793,22.5415471346161,15.6811522440892,15.1282939990748,11.3620028222316,6.26041717530147,3.09981310757165,2.04098346193787,2.71473760627961,0.296452627087149,36.8727683632568,27.9113773060748,33.2795926329584,25.7632354163399,22.9118301764796,18.0784354764808,16.3986798346962,14.4300351829781,12.3552635934637,7.18841032636773,7.44281895337007,3.43241440426017,2.27320990152401,1.97337154874103,2.41221760681684,4.80358294433172,30.3186258832776,23.7928865605358,20.5391553787978,18.5405296147917,13.7355131102289,11.1880511216426,9.75668239288994,8.03939234941574,6.2010113101657,6.218735977642,6.55453258862952,6.56202931090403,4.77341893318988,21.1107797514981,5.98296252200581,3.44234991113325,5.79467167239938,3.53211297973142,4.10240903072711,40.6558664534155,2.01976741763498,17.6684602873104,12.8844785617891,23.6965737506079,15.5329718669159,20.943075363745,16.1353622549635,16.5972387686707,20.1656541958805,15.4162233399144,7.71171159412337,7.80670468645477,14.4233138970477,10.2618784392753,5.1140738121486,2.65490276679926,18.4513283477786,16.0231485191318,7.16699303072413,8.85905678642318,5.53383266299069,6.46070732920553,7.99774204850512,5.70395805415554,4.74055136903724,7.37930260024991,14.4389760547462,7.14923172082955,27.5493473867905,28.0708343808577,23.7914108885067,17.2020026633005,19.9773075714319,12.6702745863633,17.6589670486468,11.2642419870581,13.9809166770121,5.07215315526412,6.10079135883476,15.339120536111,17.00824482974,28.1718731847402,26.2625439592098,4.66369338607761,4.45020724825223,19.4792804109552,28.4813877789247,27.4087900507173,32.2110061478022,31.7130608312778,24.936820879511,59.1524936378616,62.8382020933224,57.9057890240536,3.81868247206045,33.3734473228098,15.2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| ||
|short_description=p2@Rcc2 | |short_description=p2@Rcc2 | ||
}} | }} |
Latest revision as of 15:03, 26 September 2015
Short description: | p2@Rcc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rcc2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3464 |
Association with transcript: | 0bp_to_ENSMUST00000038893_5end |
EntrezGene: | Rcc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.80e-13 | 32 |
hematopoietic oligopotent progenitor cell | 1.80e-13 | 32 |
hematopoietic stem cell | 1.80e-13 | 32 |
hematopoietic multipotent progenitor cell | 1.80e-13 | 32 |
hematopoietic lineage restricted progenitor cell | 7.64e-10 | 25 |
connective tissue cell | 4.22e-08 | 46 |
mesenchymal cell | 4.22e-08 | 46 |
stem cell | 1.02e-07 | 97 |
common myeloid progenitor | 1.39e-07 | 19 |
motile cell | 2.56e-07 | 54 |
leukocyte | 2.84e-07 | 17 |
nongranular leukocyte | 2.84e-07 | 17 |
lymphocyte | 3.68e-07 | 13 |
common lymphoid progenitor | 3.68e-07 | 13 |
lymphoid lineage restricted progenitor cell | 8.25e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.81e-17 | 45 |
blood island | 9.81e-17 | 45 |
hemolymphoid system | 3.32e-15 | 48 |
immune system | 3.32e-15 | 48 |
hemopoietic organ | 1.54e-12 | 29 |
immune organ | 1.54e-12 | 29 |
segment of respiratory tract | 2.16e-11 | 27 |
thymus | 1.22e-10 | 23 |
neck | 1.22e-10 | 23 |
respiratory system epithelium | 1.22e-10 | 23 |
hemolymphoid system gland | 1.22e-10 | 23 |
pharyngeal epithelium | 1.22e-10 | 23 |
thymic region | 1.22e-10 | 23 |
pharyngeal gland | 1.22e-10 | 23 |
entire pharyngeal arch endoderm | 1.22e-10 | 23 |
thymus primordium | 1.22e-10 | 23 |
early pharyngeal endoderm | 1.22e-10 | 23 |
anterior region of body | 1.90e-10 | 43 |
mixed endoderm/mesoderm-derived structure | 4.16e-10 | 35 |
pharynx | 5.51e-10 | 24 |
upper respiratory tract | 5.51e-10 | 24 |
chordate pharynx | 5.51e-10 | 24 |
pharyngeal arch system | 5.51e-10 | 24 |
pharyngeal region of foregut | 5.51e-10 | 24 |
gland of gut | 7.82e-10 | 24 |
craniocervical region | 1.56e-08 | 36 |
respiratory tract | 3.32e-08 | 41 |
connective tissue | 4.22e-08 | 46 |
respiratory system | 9.31e-08 | 42 |