FFCP PHASE1:Mm9::chr7:31844941..31844960,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=243914 | |EntrezGene=243914 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=112 | |||
|TSSclassifier=NA | |||
|UniProt=Q8K1S1 | |UniProt=Q8K1S1 | ||
|association_with_transcript=0bp_to_NM_144556,uc009ghz.1_5end | |association_with_transcript=0bp_to_NM_144556,uc009ghz.1_5end | ||
|cluster_id=chr7:31844941..31844960,+ | |||
|description=CAGE_peak_7_at_Lgi4_5end | |description=CAGE_peak_7_at_Lgi4_5end | ||
|id=chr7:31844941..31844960,+ | |id=chr7:31844941..31844960,+ | ||
|ontology_enrichment_celltype=CL:0000221!6.09e-12!44;CL:0000133!6.09e-12!44;CL:0002319!3.66e-11!43;CL:0000055!7.98e-11!50;CL:0000107!1.83e-10!9;CL:0000540!1.52e-08!33;CL:0000047!1.52e-08!33;CL:0000031!1.52e-08!33;CL:0000404!1.52e-08!33;CL:0000393!1.24e-07!39;CL:0000211!1.24e-07!39 | |ontology_enrichment_celltype=CL:0000221!6.09e-12!44;CL:0000133!6.09e-12!44;CL:0002319!3.66e-11!43;CL:0000055!7.98e-11!50;CL:0000107!1.83e-10!9;CL:0000540!1.52e-08!33;CL:0000047!1.52e-08!33;CL:0000031!1.52e-08!33;CL:0000404!1.52e-08!33;CL:0000393!1.24e-07!39;CL:0000211!1.24e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000107,1.16e-29,9;CL:0000221,2.89e-21,44;CL:0000133,2.89e-21,44;CL:0002319,3.00e-19,43;CL:0000540,9.12e-15,33;CL:0000047,9.12e-15,33;CL:0000031,9.12e-15,33;CL:0000404,9.12e-15,33;CL:0000393,4.33e-12,39;CL:0000211,4.33e-12,39;CL:0002321,5.54e-12,70;CL:0000878,1.16e-07,2;CL:0000129,1.16e-07,2;CL:0000217,1.46e-07,2;CL:0000328,1.46e-07,2;CL:0002573,1.46e-07,2;CL:0002376,1.46e-07,2;CL:0000218,1.46e-07,2;CL:0000692,1.46e-07,2;CL:0002377,1.46e-07,2;CL:0002375,1.46e-07,2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.10e-18!102;UBERON:0000924!1.10e-18!102;UBERON:0006601!1.10e-18!102;UBERON:0000073!2.60e-16!75;UBERON:0001016!2.60e-16!75;UBERON:0001017!8.81e-15!73;UBERON:0005743!8.81e-15!73;UBERON:0000010!2.27e-12!11;UBERON:0002410!1.83e-10!9;UBERON:0002346!2.21e-08!71;UBERON:0003075!2.21e-08!71;UBERON:0007284!2.21e-08!71;UBERON:0000033!4.03e-08!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,1.04e-35,11;UBERON:0002410,1.16e-29,9;UBERON:0001016,8.22e-25,75;UBERON:0001017,3.19e-21,73;UBERON:0004121,1.87e-20,95;UBERON:0000924,1.87e-20,95;UBERON:0006601,1.87e-20,95;UBERON:0000011,3.07e-11,3;UBERON:0000013,8.26e-11,3;UBERON:0010313,8.26e-11,3;UBERON:0002342,8.26e-11,3;UBERON:0002005,8.26e-11,3;UBERON:0005428,8.26e-11,3;UBERON:0005062,8.26e-11,3;UBERON:0011216,1.97e-08,194;UBERON:0001896,6.25e-07,2;UBERON:0002298,6.25e-07,2;UBERON:0005290,6.25e-07,2;UBERON:0010096,6.25e-07,2;UBERON:0002346,8.47e-07,64;UBERON:0003075,8.47e-07,64;UBERON:0007284,8.47e-07,64 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0,0.183546752161682,0,0,0.219686182734472,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29560121570245,1.92109152660777,0,0,0,0.571301968807607,0.662605622854841,0,0,0,3.30347642998166,0.893811366596314,1.99688493233117,0,0,0,1.11673199600552,0.56276261003168,2.13917546887534,0.589257170947335,0.711858403995515,0,1.13589289999776,21.840180870861,0,0.860423876981386,0,0,0,0,0,0,0,0,2.95771181531029,0,0,0,0,0,0,0.22836775943812,0.258937883647172,0.148442139064825,0.173485326766136,0.304465478312141,0,0.150722640552623,0,0,0,0.144599356919912,0,0.161766849947409,0.220841518460394,1.45462575940567,0,2.04946557908083,0.628340120440365,0,0,0,0,0.449371918214468,1.83000241127451,0.251308704225729,1.04294592115366,0.255715457330331,1.0389402227978,0.811206315338788,0.101839363850316,0,0,0.210441855886474,0,0,0,0.150704817835715,0.0680364991513279,0.384341160854549,0.749613796477831,0,0,0,0.175951124163949,0,0,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0.164167464079095,0.243206428637567,0,0,0.134206418760372,0.841159794256509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0.114248512609729,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0.327726629431476,0.345369963731791,0,0,0,0.491764273019036,0,1.28440471990234,1.17211686592203,0,0.252470927204373,1.89304931649754,3.51394869866975,3.23135096599198,2.62865677747807,5.79276552614225,7.35998980050964,3.23848561339915,2.33804686329049,2.76701444562566,0.642642632843614,0.283880170416537,0,0.162886959353576,0,0,0,0,0,0,0,0.258428293168221,0,0.712994756769443,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0.23467170806371,0,0,0.16488625294148,0,0.120625849856312,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0.209088296014469,0,0.134864346384821,0.165306911450672,0,0,0.621339313086926,0,0,0,0,0.258319646955462,0,0,0.13020438484395,0.209718688851422,0.724752362478018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0,0.214368379079066,0.501572104035363,1.12950368523413,0.460325236507177,0,0,0,0,0,1.35096360967266,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0.0936415074698824,0,0.0574354689556133,0,0.115884325944855,0,0.412085900803307,0.147198920134397,0,0.177475806159338,0,0,0,0.169229215783353,0,0,0.135804113845862,0.561142271657738,0,0,0,0,0,0,0,0,0.191288332068843,0.220591419119515,0.927471342481686 | |phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0,0.183546752161682,0,0,0.219686182734472,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29560121570245,1.92109152660777,0,0,0,0.571301968807607,0.662605622854841,0,0,0,3.30347642998166,0.893811366596314,1.99688493233117,0,0,0,1.11673199600552,0.56276261003168,2.13917546887534,0.589257170947335,0.711858403995515,0,1.13589289999776,21.840180870861,0,0.860423876981386,0,0,0,0,0,0,0,0,2.95771181531029,0,0,0,0,0,0,0.22836775943812,0.258937883647172,0.148442139064825,0.173485326766136,0.304465478312141,0,0.150722640552623,0,0,0,0.144599356919912,0,0.161766849947409,0.220841518460394,1.45462575940567,0,2.04946557908083,0.628340120440365,0,0,0,0,0.449371918214468,1.83000241127451,0.251308704225729,1.04294592115366,0.255715457330331,1.0389402227978,0.811206315338788,0.101839363850316,0,0,0.210441855886474,0,0,0,0.150704817835715,0.0680364991513279,0.384341160854549,0.749613796477831,0,0,0,0.175951124163949,0,0,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0.164167464079095,0.243206428637567,0,0,0.134206418760372,0.841159794256509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0.114248512609729,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0.327726629431476,0.345369963731791,0,0,0,0.491764273019036,0,1.28440471990234,1.17211686592203,0,0.252470927204373,1.89304931649754,3.51394869866975,3.23135096599198,2.62865677747807,5.79276552614225,7.35998980050964,3.23848561339915,2.33804686329049,2.76701444562566,0.642642632843614,0.283880170416537,0,0.162886959353576,0,0,0,0,0,0,0,0.258428293168221,0,0.712994756769443,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0.23467170806371,0,0,0.16488625294148,0,0.120625849856312,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0.209088296014469,0,0.134864346384821,0.165306911450672,0,0,0.621339313086926,0,0,0,0,0.258319646955462,0,0,0.13020438484395,0.209718688851422,0.724752362478018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0,0.214368379079066,0.501572104035363,1.12950368523413,0.460325236507177,0,0,0,0,0,1.35096360967266,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0.0936415074698824,0,0.0574354689556133,0,0.115884325944855,0,0.412085900803307,0.147198920134397,0,0.177475806159338,0,0,0,0.169229215783353,0,0,0.135804113845862,0.561142271657738,0,0,0,0,0,0,0,0,0.191288332068843,0.220591419119515,0.927471342481686 | ||
|short_description=p7@Lgi4 | |short_description=p7@Lgi4 | ||
}} | }} |
Latest revision as of 15:40, 26 September 2015
Short description: | p7@Lgi4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Lgi4_5end |
Coexpression cluster: | MCL_coexpression_mm9:112 |
Association with transcript: | 0bp_to_NM_144556, uc009ghz.1_5end |
EntrezGene: | Lgi4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
autonomic neuron | 1.16e-29 | 9 |
ectodermal cell | 2.89e-21 | 44 |
neurectodermal cell | 2.89e-21 | 44 |
neural cell | 3.00e-19 | 43 |
neuron | 9.12e-15 | 33 |
neuronal stem cell | 9.12e-15 | 33 |
neuroblast | 9.12e-15 | 33 |
electrically signaling cell | 9.12e-15 | 33 |
electrically responsive cell | 4.33e-12 | 39 |
electrically active cell | 4.33e-12 | 39 |
embryonic cell | 5.54e-12 | 70 |
central nervous system macrophage | 1.16e-07 | 2 |
microglial cell | 1.16e-07 | 2 |
insulating cell | 1.46e-07 | 2 |
myelin accumulating cell | 1.46e-07 | 2 |
Schwann cell | 1.46e-07 | 2 |
non-myelinating Schwann cell | 1.46e-07 | 2 |
myelinating Schwann cell;;Schwann cell | 1.46e-07 | 2 |
terminal Schwann cell | 1.46e-07 | 2 |
immature Schwann cell | 1.46e-07 | 2 |
Schwann cell precursor | 1.46e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 1.04e-35 | 11 |
autonomic nervous system | 1.16e-29 | 9 |
nervous system | 8.22e-25 | 75 |
central nervous system | 3.19e-21 | 73 |
ectoderm-derived structure | 1.87e-20 | 95 |
ectoderm | 1.87e-20 | 95 |
presumptive ectoderm | 1.87e-20 | 95 |
parasympathetic nervous system | 3.07e-11 | 3 |
sympathetic nervous system | 8.26e-11 | 3 |
neural crest-derived structure | 8.26e-11 | 3 |
neural crest | 8.26e-11 | 3 |
enteric nervous system | 8.26e-11 | 3 |
vagal neural crest | 8.26e-11 | 3 |
neural fold | 8.26e-11 | 3 |
organ system subdivision | 1.97e-08 | 194 |
medulla oblongata | 6.25e-07 | 2 |
brainstem | 6.25e-07 | 2 |
myelencephalon | 6.25e-07 | 2 |
future myelencephalon | 6.25e-07 | 2 |
neurectoderm | 8.47e-07 | 64 |
neural plate | 8.47e-07 | 64 |
presumptive neural plate | 8.47e-07 | 64 |