FFCP PHASE1:Mm9::chr13:104899656..104899699,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr13:104899656..104899699,- to FFCP PHASE1:Mm9::chr13:104899656..104899699,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=75805 | |EntrezGene=75805 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=Q91YP2,Q3TB65,Q3UUI1 | |UniProt=Q91YP2,Q3TB65,Q3UUI1 | ||
|association_with_transcript=0bp_to_ENSMUST00000109315,NM_029447,uc007rsp.1,uc007rsq.1,uc007rsr.1_5end | |||
|cluster_id=chr13:104899656..104899699,- | |||
|description=CAGE_peak_2_at_Nln_5end | |||
|id=chr13:104899656..104899699,- | |||
|ontology_enrichment_celltype=CL:0000117!1.22e-09!23;CL:0000337!1.22e-09!23;CL:0000393!6.83e-09!39;CL:0000211!6.83e-09!39;CL:0000540!5.09e-08!33;CL:0000047!5.09e-08!33;CL:0000031!5.09e-08!33;CL:0000404!5.09e-08!33;CL:0000055!8.07e-08!50;CL:0002319!3.17e-07!43;CL:0000221!4.87e-07!44;CL:0000133!4.87e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.22e-09,23;CL:0000337,1.22e-09,23;CL:0000393,6.83e-09,39;CL:0000211,6.83e-09,39;CL:0000540,5.09e-08,33;CL:0000047,5.09e-08,33;CL:0000031,5.09e-08,33;CL:0000404,5.09e-08,33;CL:0002319,3.17e-07,43;CL:0000221,4.87e-07,44;CL:0000133,4.87e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!6.83e-14!34;UBERON:0002791!1.11e-10!29;UBERON:0003528!1.11e-10!29;UBERON:0001893!1.11e-10!29;UBERON:0000073!8.89e-09!75;UBERON:0001016!8.89e-09!75;UBERON:0000956!9.89e-09!21;UBERON:0001869!9.89e-09!21;UBERON:0000203!9.89e-09!21;UBERON:0000025!5.20e-08!114;UBERON:0001017!5.35e-08!73;UBERON:0005743!5.35e-08!73;UBERON:0001049!1.16e-07!52;UBERON:0005068!1.16e-07!52;UBERON:0006241!1.16e-07!52;UBERON:0007135!1.16e-07!52;UBERON:0002619!1.63e-07!17;UBERON:0002021!6.41e-07!10;UBERON:0000411!6.41e-07!10;UBERON:0001950!6.41e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,6.83e-14,34;UBERON:0003528,1.11e-10,29;UBERON:0002791,1.11e-10,29;UBERON:0001893,1.11e-10,29;UBERON:0001016,8.89e-09,75;UBERON:0000956,9.89e-09,21;UBERON:0001869,9.89e-09,21;UBERON:0000203,9.89e-09,21;UBERON:0000025,5.20e-08,114;UBERON:0001017,5.35e-08,73;UBERON:0001049,1.16e-07,52;UBERON:0005068,1.16e-07,52;UBERON:0006241,1.16e-07,52;UBERON:0007135,1.16e-07,52;UBERON:0000073,1.19e-07,54;UBERON:0002619,1.63e-07,17;UBERON:0002021,6.41e-07,10;UBERON:0000411,6.41e-07,10;UBERON:0001950,6.41e-07,10;UBERON:0004121,7.40e-07,95;UBERON:0000924,7.40e-07,95;UBERON:0006601,7.40e-07,95;UBERON:0010314,8.01e-07,92 | |||
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| ||
|short_description=p2@Nln | |||
}} | }} |
Latest revision as of 01:44, 27 September 2015
Short description: | p2@Nln |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nln_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 0bp_to_ENSMUST00000109315, NM_029447, uc007rsp.1, uc007rsq.1, uc007rsr.1_5end |
EntrezGene: | Nln |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.22e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.22e-09 | 23 |
electrically responsive cell | 6.83e-09 | 39 |
electrically active cell | 6.83e-09 | 39 |
neuron | 5.09e-08 | 33 |
neuronal stem cell | 5.09e-08 | 33 |
neuroblast | 5.09e-08 | 33 |
electrically signaling cell | 5.09e-08 | 33 |
neural cell | 3.17e-07 | 43 |
ectodermal cell | 4.87e-07 | 44 |
neurectodermal cell | 4.87e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
gray matter | 6.83e-14 | 34 |
brain grey matter | 1.11e-10 | 29 |
regional part of telencephalon | 1.11e-10 | 29 |
telencephalon | 1.11e-10 | 29 |
nervous system | 8.89e-09 | 75 |
cerebral cortex | 9.89e-09 | 21 |
cerebral hemisphere | 9.89e-09 | 21 |
pallium | 9.89e-09 | 21 |
tube | 5.20e-08 | 114 |
central nervous system | 5.35e-08 | 73 |
neural tube | 1.16e-07 | 52 |
neural rod | 1.16e-07 | 52 |
future spinal cord | 1.16e-07 | 52 |
neural keel | 1.16e-07 | 52 |
regional part of nervous system | 1.19e-07 | 54 |
regional part of cerebral cortex | 1.63e-07 | 17 |
occipital lobe | 6.41e-07 | 10 |
visual cortex | 6.41e-07 | 10 |
neocortex | 6.41e-07 | 10 |
ectoderm-derived structure | 7.40e-07 | 95 |
ectoderm | 7.40e-07 | 95 |
presumptive ectoderm | 7.40e-07 | 95 |
structure with developmental contribution from neural crest | 8.01e-07 | 92 |