FFCP PHASE1:Mm9::chr3:148652676..148652715,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:148652676..148652715,-
|short_description=p7@Lphn2
|description=CAGE_peak_7_at_Lphn2_5end
|association_with_transcript=-232bp_to_uc008rsc.1_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=99633 | |EntrezGene=99633 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UQ39 | |UniProt=Q3UQ39 | ||
|association_with_transcript=-232bp_to_uc008rsc.1_5end | |||
|cluster_id=chr3:148652676..148652715,- | |||
|description=CAGE_peak_7_at_Lphn2_5end | |||
|id=chr3:148652676..148652715,- | |||
|ontology_enrichment_celltype=CL:0000117!1.19e-09!23;CL:0000337!1.19e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.87e-22,23;CL:0000337,8.87e-22,23;CL:0000540,1.09e-13,33;CL:0000047,1.09e-13,33;CL:0000031,1.09e-13,33;CL:0000404,1.09e-13,33;CL:0002609,8.57e-12,6;CL:0000393,7.44e-11,39;CL:0000211,7.44e-11,39;CL:0002319,2.04e-09,43;CL:0000221,4.24e-09,44;CL:0000133,4.24e-09,44;CL:0002612,2.85e-07,3;CL:0002608,7.52e-07,3;CL:0000120,8.20e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!7.09e-09!34;UBERON:0001049!3.17e-08!52;UBERON:0005068!3.17e-08!52;UBERON:0006241!3.17e-08!52;UBERON:0007135!3.17e-08!52;UBERON:0003056!5.90e-08!49;UBERON:0002346!6.59e-07!71;UBERON:0003075!6.59e-07!71;UBERON:0007284!6.59e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.26e-12,34;UBERON:0001948,7.38e-11,5;UBERON:0002315,7.38e-11,5;UBERON:0002240,6.18e-09,6;UBERON:0005174,6.18e-09,6;UBERON:0001137,6.18e-09,6;UBERON:0001049,1.19e-08,52;UBERON:0005068,1.19e-08,52;UBERON:0006241,1.19e-08,52;UBERON:0007135,1.19e-08,52;UBERON:0000073,3.76e-08,54;UBERON:0002346,8.30e-08,64;UBERON:0003075,8.30e-08,64;UBERON:0007284,8.30e-08,64;UBERON:0001017,2.63e-07,73;UBERON:0002257,2.85e-07,3;UBERON:0010371,5.72e-07,73;UBERON:0001016,5.78e-07,75;UBERON:0003528,8.80e-07,29;UBERON:0002791,8.80e-07,29;UBERON:0001893,8.80e-07,29 | |||
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|phase1_expression=0,0.348975407639361,0.454999239389536,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0.198581902401771,0,0.47997726838022,0.22940928106717,0,0,0.430942465371778,0,0.252030129759931,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0.194429899074283,0.979904951377538,0,0,0,0,0,0,0.515672092277442,4.45096213891115,2.64495489636016,3.1691570175309,0.338844532069132,1.77858959222228,0,0,0,0.299600110518405,0,2.7996195323289,2.70011876663381,1.89292465216244,2.85650984403804,4.63823935998388,3.55223317723367,2.77951865952885,3.67687514644008,0,0.127687338085188,0.46081959976873,3.69281605644543,1.46380229763855,1.56274011167028,0,0.56276261003168,0,8.54422897873636,7.54569908235246,9.13357284543973,0,0,1.44932244350839,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0.470354828542819,0,0,0.433798070759735,0,0,0,0,0,0,0.41889341362691,0.255457055208591,0.11981512450592,1.19980546198682,0.254140454146129,0.898743836428936,0.915001205637253,2.76439574648302,0.347648640384553,1.53429274398198,0.62336413367868,0.486723789203273,0.305518091550949,0.124406970610093,0,0.841767423545896,1.56144531555244,1.14951052216736,0.900310649026746,0.90422890701429,0.544291993210623,0,0.187403449119458,0.517406741478031,0.646703978798527,1.32374256117473,1.93546236580344,1.09597866213787,0.556094498451196,0,0.61734640922383,0.199034266818493,0,0,0,0,0.469052119962192,0,0.23674473558521,0,0.308534225774757,0,0.268273401399619,0.116765342367169,0.329119699826961,0.164167464079095,0.324275238183423,0.146199987425332,0,0,0.630869845692382,1.13195073617213,0,0.264450566663544,0,0.464473343720877,0.128867461322093,0,0.667134131534611,0,0,0.164698954724011,0.251335208800269,0.198956472041151,0.19496408711912,0,0.216138049874694,0,0.758671603812327,1.02823661348756,0,0.814605311381257,0.387904974335251,0.280543279561274,0.189709611372772,0.295220295959204,0.156998727841375,0.246794327843601,0.592905254174298,0,0,0,0,0.241177159752417,0,0,0,0,1.43768206527355,0.744281895337007,0,0,0.179397413521912,0,0.184753190166605,0.757965647081939,0.977789858652155,0.339490171550376,0.938760993154008,0,0.238043640886014,0.390267295715598,0.472905432318573,0.8858587585951,0.318909537314974,0,0.518054945597687,0.433947175744535,0,0,0,0.551873492609465,1.76605648986571,0.586058432961016,1.80328439914343,0,0,0,0.215423397732799,0.238968797952552,0,0,0,0,0,0,0.283880170416537,0.712262414669021,0.325773918707152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08036656418786,0.129358683782755,0,0.532020700926821,0.891844088010353,0.493647061806363,0,0.23467170806371,0.63549621259146,0.220528398054962,1.31909002353184,0.322928853391811,0.482503399425247,0.477489376012546,0.656563598980245,0.582961673259701,0.18542530201051,0,0.206386867963223,0,0,0,0,0,0.139951452323658,0,0,1.73984796469624,0.203319467126849,0,0.418176592028937,0.436725127492355,0.269728692769641,0.165306911450672,0,0,0.621339313086926,0,1.34564891439581,0.165458490457098,0.194451188344048,0.129159823477731,0.337912250981556,0.704143431874524,0.39061315453185,0.734015410979976,0,0,0,0,0.102710957164827,0,0,0,0,0.147689527174577,0.100966449948148,0,0,0.194915761479505,0.0962118416403295,0,0,0.665957860122194,0.358855426437903,0.503653849092235,0,1.31377732815827,0.36630324853453,0,0,0.564751842617067,0,0.572895513439397,0.171853182343688,1.37016503954128,0.755393897389701,0.675022500231806,0,0,0.51776031175182,0.103787347584177,2.79317411380722,2.04880326904961,1.70174701947806,1.46729213839588,0.735374033800057,0.666740183404846,1.23621034343337,0,1.01078884705519,0.25347929989024,0,1.21733959710847,0.640251524048693,1.03383844120104,0.476293691283074,0.579421629724277,0.578727661391115,0.412085900803307,0.294397840268795,1.02860775715625,1.24233064311536,0.476872379894642,0.436039249896986,1.12931256498397,1.01537529470012,0.365855945745545,1.57841826862706,0.407412341537585,0.561142271657738,1.06771516311757,0.591026894253381,0.409231043169689,0.619747364743864,0.771626443924566,1.74867404556562,0.467863216890817,0.429742108096597,0.765153328275374,0,0.463735671240843 | ||
|short_description=p7@Lphn2 | |||
}} | }} |
Latest revision as of 19:13, 1 October 2015
Short description: | p7@Lphn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Lphn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | -232bp_to_uc008rsc.1_5end |
EntrezGene: | Lphn2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.87e-22 | 23 |
neuroblast (sensu Vertebrata) | 8.87e-22 | 23 |
neuron | 1.09e-13 | 33 |
neuronal stem cell | 1.09e-13 | 33 |
neuroblast | 1.09e-13 | 33 |
electrically signaling cell | 1.09e-13 | 33 |
neuron of cerebral cortex | 8.57e-12 | 6 |
electrically responsive cell | 7.44e-11 | 39 |
electrically active cell | 7.44e-11 | 39 |
neural cell | 2.04e-09 | 43 |
ectodermal cell | 4.24e-09 | 44 |
neurectodermal cell | 4.24e-09 | 44 |
neuron of the ventral spinal cord | 2.85e-07 | 3 |
hippocampal neuron | 7.52e-07 | 3 |
granule cell | 8.20e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gray matter | 1.26e-12 | 34 |
regional part of spinal cord | 7.38e-11 | 5 |
gray matter of spinal cord | 7.38e-11 | 5 |
spinal cord | 6.18e-09 | 6 |
dorsal region element | 6.18e-09 | 6 |
dorsum | 6.18e-09 | 6 |
neural tube | 1.19e-08 | 52 |
neural rod | 1.19e-08 | 52 |
future spinal cord | 1.19e-08 | 52 |
neural keel | 1.19e-08 | 52 |
regional part of nervous system | 3.76e-08 | 54 |
neurectoderm | 8.30e-08 | 64 |
neural plate | 8.30e-08 | 64 |
presumptive neural plate | 8.30e-08 | 64 |
central nervous system | 2.63e-07 | 73 |
ventral horn of spinal cord | 2.85e-07 | 3 |
ecto-epithelium | 5.72e-07 | 73 |
nervous system | 5.78e-07 | 75 |
brain grey matter | 8.80e-07 | 29 |
regional part of telencephalon | 8.80e-07 | 29 |
telencephalon | 8.80e-07 | 29 |