FF:11553-120C5: Difference between revisions

Revision as of 15:23, 15 May 2017

Name:	Fibroblast - skin normal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11351
Sample type:	primary cells
Genomic View:	UCSC
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	25 year old
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	Splicing (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004775

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11351		CAGE		DRX008287		DRR009159

Accession ID Hg19

Library id		BAM		CTSS
CNhs11351		DRZ000584		DRZ001969

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.114
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.169
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.638
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0907
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.102
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0741
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.344
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.104
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.06
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.427
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.0741
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.429
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.193
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.484
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.242
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.164
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0741
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.396
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.326
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.705
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.274
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.638
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.484
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11351

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.869
MA0003.1	MA0003.1	0.359
MA0004.1	MA0004.1	0.00671
MA0006.1	MA0006.1	0.103
MA0007.1	MA0007.1	0.715
MA0009.1	MA0009.1	0.215
MA0014.1	MA0014.1	0.459
MA0017.1	MA0017.1	0.494
MA0018.2	MA0018.2	1.17856e-6
MA0019.1	MA0019.1	0.554
MA0024.1	MA0024.1	1.16242e-7
MA0025.1	MA0025.1	0.0335
MA0027.1	MA0027.1	0.529
MA0028.1	MA0028.1	0.249
MA0029.1	MA0029.1	0.686
MA0030.1	MA0030.1	0.117
MA0031.1	MA0031.1	0.207
MA0035.2	MA0035.2	0.00657
MA0038.1	MA0038.1	0.0426
MA0039.2	MA0039.2	0.172
MA0040.1	MA0040.1	0.276
MA0041.1	MA0041.1	0.495
MA0042.1	MA0042.1	0.602
MA0043.1	MA0043.1	1.03909e-5
MA0046.1	MA0046.1	0.674
MA0047.2	MA0047.2	0.643
MA0048.1	MA0048.1	0.187
MA0050.1	MA0050.1	0.18
MA0051.1	MA0051.1	0.5
MA0052.1	MA0052.1	0.787
MA0055.1	MA0055.1	0.952
MA0057.1	MA0057.1	0.113
MA0058.1	MA0058.1	0.00161
MA0059.1	MA0059.1	0.118
MA0060.1	MA0060.1	7.8537e-9
MA0061.1	MA0061.1	0.0547
MA0062.2	MA0062.2	2.00716e-4
MA0065.2	MA0065.2	0.219
MA0066.1	MA0066.1	0.34
MA0067.1	MA0067.1	0.00191
MA0068.1	MA0068.1	0.976
MA0069.1	MA0069.1	0.0222
MA0070.1	MA0070.1	0.566
MA0071.1	MA0071.1	0.513
MA0072.1	MA0072.1	0.598
MA0073.1	MA0073.1	0.992
MA0074.1	MA0074.1	0.913
MA0076.1	MA0076.1	0.192
MA0077.1	MA0077.1	0.268
MA0078.1	MA0078.1	0.685
MA0079.2	MA0079.2	0.994
MA0080.2	MA0080.2	2.51023e-7
MA0081.1	MA0081.1	0.0173
MA0083.1	MA0083.1	0.0262
MA0084.1	MA0084.1	0.443
MA0087.1	MA0087.1	0.867
MA0088.1	MA0088.1	0.898
MA0090.1	MA0090.1	5.67698e-6
MA0091.1	MA0091.1	0.151
MA0092.1	MA0092.1	0.104
MA0093.1	MA0093.1	0.0158
MA0099.2	MA0099.2	0.293
MA0100.1	MA0100.1	0.237
MA0101.1	MA0101.1	4.01735e-4
MA0102.2	MA0102.2	0.0692
MA0103.1	MA0103.1	2.20978e-4
MA0104.2	MA0104.2	8.12367e-4
MA0105.1	MA0105.1	0.192
MA0106.1	MA0106.1	0.0158
MA0107.1	MA0107.1	0.00226
MA0108.2	MA0108.2	0.0938
MA0111.1	MA0111.1	0.099
MA0112.2	MA0112.2	0.0315
MA0113.1	MA0113.1	0.93
MA0114.1	MA0114.1	0.414
MA0115.1	MA0115.1	0.0768
MA0116.1	MA0116.1	0.893
MA0117.1	MA0117.1	0.305
MA0119.1	MA0119.1	1
MA0122.1	MA0122.1	0.686
MA0124.1	MA0124.1	0.531
MA0125.1	MA0125.1	0.322
MA0131.1	MA0131.1	0.393
MA0135.1	MA0135.1	0.828
MA0136.1	MA0136.1	1.035e-8
MA0137.2	MA0137.2	0.528
MA0138.2	MA0138.2	0.347
MA0139.1	MA0139.1	0.612
MA0140.1	MA0140.1	0.0657
MA0141.1	MA0141.1	0.395
MA0142.1	MA0142.1	0.0281
MA0143.1	MA0143.1	0.998
MA0144.1	MA0144.1	0.898
MA0145.1	MA0145.1	0.309
MA0146.1	MA0146.1	0.633
MA0147.1	MA0147.1	0.00536
MA0148.1	MA0148.1	0.641
MA0149.1	MA0149.1	0.321
MA0150.1	MA0150.1	0.0573
MA0152.1	MA0152.1	0.0349
MA0153.1	MA0153.1	0.334
MA0154.1	MA0154.1	0.505
MA0155.1	MA0155.1	0.414
MA0156.1	MA0156.1	1.21863e-4
MA0157.1	MA0157.1	0.622
MA0159.1	MA0159.1	0.83
MA0160.1	MA0160.1	0.107
MA0162.1	MA0162.1	0.0856
MA0163.1	MA0163.1	0.197
MA0164.1	MA0164.1	0.613
MA0258.1	MA0258.1	0.969
MA0259.1	MA0259.1	0.143

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11351

Novel motif	Logo	P-value
1	1	0.385
10	10	0.472
100	100	0.581
101	101	0.594
102	102	0.0342
103	103	0.655
104	104	0.719
105	105	0.615
106	106	0.935
107	107	0.563
108	108	0.96
109	109	0.474
11	11	0.74
110	110	0.891
111	111	0.535
112	112	0.697
113	113	7.25794e-4
114	114	0.569
115	115	0.315
116	116	0.109
117	117	0.268
118	118	0.618
119	119	0.523
12	12	0.586
120	120	0.896
121	121	0.712
122	122	0.651
123	123	6.87201e-5
124	124	0.629
125	125	0.826
126	126	0.883
127	127	0.74
128	128	0.998
129	129	0.431
13	13	0.361
130	130	0.113
131	131	0.786
132	132	0.222
133	133	0.537
134	134	0.513
135	135	0.135
136	136	0.0712
137	137	0.406
138	138	0.409
139	139	0.743
14	14	0.37
140	140	0.35
141	141	0.193
142	142	0.81
143	143	0.854
144	144	0.754
145	145	0.951
146	146	0.984
147	147	0.0511
148	148	0.514
149	149	0.00511
15	15	0.366
150	150	0.341
151	151	0.698
152	152	0.0568
153	153	0.2
154	154	0.882
155	155	0.00862
156	156	0.795
157	157	0.236
158	158	0.00668
159	159	0.707
16	16	0.105
160	160	0.579
161	161	0.34
162	162	0.775
163	163	0.804
164	164	0.687
165	165	0.532
166	166	0.0488
167	167	0.279
168	168	0.301
169	169	0.0551
17	17	0.905
18	18	0.144
19	19	0.0118
2	2	0.215
20	20	0.226
21	21	0.0464
22	22	0.261
23	23	0.302
24	24	0.358
25	25	0.3
26	26	0.515
27	27	0.595
28	28	0.283
29	29	0.716
3	3	0.802
30	30	0.131
31	31	0.776
32	32	2.26669e-11
33	33	0.433
34	34	0.834
35	35	0.556
36	36	0.0489
37	37	0.213
38	38	0.492
39	39	0.167
4	4	0.663
40	40	0.235
41	41	0.669
42	42	0.387
43	43	0.734
44	44	0.701
45	45	0.677
46	46	0.897
47	47	0.583
48	48	0.729
49	49	0.325
5	5	0.488
50	50	0.432
51	51	0.667
52	52	0.88
53	53	0.177
54	54	0.796
55	55	0.204
56	56	0.791
57	57	0.837
58	58	0.25
59	59	0.158
6	6	0.986
60	60	0.629
61	61	0.26
62	62	0.649
63	63	0.724
64	64	0.538
65	65	0.8
66	66	0.337
67	67	0.937
68	68	0.744
69	69	0.989
7	7	0.169
70	70	0.674
71	71	0.794
72	72	0.82
73	73	0.0577
74	74	0.48
75	75	0.319
76	76	0.44
77	77	0.0575
78	78	0.0926
79	79	0.0727
8	8	0.77
80	80	0.955
81	81	0.749
82	82	0.122
83	83	0.108
84	84	0.207
85	85	0.86
86	86	0.518
87	87	0.378
88	88	0.636
89	89	0.113
9	9	0.498
90	90	0.245
91	91	0.713
92	92	0.231
93	93	0.701
94	94	0.789
95	95	0.905
96	96	0.879
97	97	0.592
98	98	0.425
99	99	0.0107

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11351

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000250 human fibroblast of skin sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.48!299.46!LHX9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.97!91.94!HOXC5;;chr10:28034739..28034756,-!p1@MKX!1.89!76.68!MKX;;chr6:134210243..134210257,+!p1@TCF21!1.85!69.79!TCF21;;chr9:132427883..132427951,+!p2@PRRX2!1.62!40.39!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.56!176.81!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.83!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.52!86.92!TWIST1;;chr9:132427972..132428056,+!p1@PRRX2!1.51!40.20!PRRX2;;chr7:27224795..27224840,-!p2@HOXA11!1.45!27.36!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.37!22.71!HOXA11;;chr2:239756671..239756732,+!p1@TWIST2!1.34!66.07!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!1.32!33.31!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!1.29!18.43!HOXC8;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.48!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.96!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.20!14.70!HAND2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.09!FOXD1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.08!CREB3L1;;chr12:54380404..54380433,+!p3@HOXC10!1.16!13.40!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.15!13.21!HOXC5;;chr12:53614115..53614154,-!p1@RARG!1.14!68.68!RARG;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.82!TFAP2A;;chr19:47523058..47523114,+!p1@NPAS1!1.14!12.84!NPAS1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.77!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.28!IRX2;;chr12:54378923..54378966,+!p1@HOXC10!1.12!12.10!HOXC10;;chr4:174451370..174451387,-!p1@HAND2!1.10!11.54!HAND2;;chr10:119303078..119303169,+!p2@EMX2!1.09!11.35!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!1.09!11.17!HOXC9;;chr2:19558373..19558392,-!p1@OSR1!1.07!29.96!OSR1;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.35!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.04!10.05!RUNX1T1;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.86!HOXD8;;chr3:157823517..157823562,-!p1@SHOX2!1.03!10.42!SHOX2;;chr7:44143925..44143970,+!p1@AEBP1!1.01!208.45!AEBP1;;chr18:53068911..53068935,-!p4@TCF4!1.01!10.42!TCF4;;chr10:28032421..28032494,-!p2@MKX!1.01!9.31!MKX;;chr10:28035133..28035148,-!p3@MKX!1.01!9.12!MKX;;chr1:197886665..197886732,+!p3@LHX9!0.99!8.75!LHX9;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.56!KDM5D;;chr5:321810..321877,+!p1@AHRR!0.97!26.99!AHRR;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.28!NFIX;;chr1:170633058..170633084,+!p5@PRRX1!0.96!8.19!PRRX1;;chr1:197886421..197886432,+!p2@LHX9!0.96!8.19!LHX9;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.82!ZFY;;chr6:19837592..19837621,+!p1@ID4!0.92!46.90!ID4;;chr10:28035112..28035130,-!p5@MKX!0.92!7.26!MKX;;chr3:147111231..147111281,+!p3@ZIC1!0.92!7.26!ZIC1;;chr20:55204351..55204377,+!p1@TFAP2C!0.90!8.93!TFAP2C;;chr8:60031934..60031986,-!p6@TOX!0.88!6.51!TOX;;chr12:54380036..54380091,+!p4@HOXC10!0.88!6.51!HOXC10;;chr10:63809013..63809041,+!p3@ARID5B!0.87!37.41!ARID5B;;chr8:60031619..60031676,-!p1@TOX!0.85!13.59!TOX;;chr5:72744445..72744466,-!p2@FOXD1!0.85!10.42!FOXD1;;chr7:27192185..27192209,-!p1@HOXA3!0.85!6.14!HOXA3;;chr1:119530493..119530572,-!p1@TBX15!0.85!6.14!TBX15;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.14!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!0.83!10.98!AEBP1;;chr6:10412600..10412637,-!p1@TFAP2A!0.83!9.86!TFAP2A;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.58!HOXA10;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.58!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.82!5.58!ZNF668;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.40!HOXA9;;chr14:75894714..75894733,+!p1@JDP2!0.80!163.22!JDP2;;chr14:24837368..24837401,+!p1@NFATC4!0.80!13.21!NFATC4;;chr8:67525443..67525459,-!p2@MYBL1!0.79!8.00!MYBL1;;chr12:54379029..54379057,+!p2@HOXC10!0.79!5.21!HOXC10;;chr8:60031809..60031835,-!p4@TOX!0.78!6.51!TOX;;chr12:54402790..54402805,+!p2@HOXC8!0.78!5.03!HOXC8;;chr3:147111198..147111225,+!p4@ZIC1!0.78!5.03!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!0.77!4.84!ZIC1;;chr8:60031682..60031710,-!p2@TOX!0.76!8.00!TOX;;chr4:81118647..81118666,+!p1@PRDM8!0.76!6.51!PRDM8;;chr16:86544113..86544145,+!p1@FOXF1!0.75!5.96!FOXF1;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.65!PRRX1;;chr2:119605214..119605230,-!p1@EN1!0.75!4.65!EN1;;chr3:25470156..25470227,+!p2@RARB!0.75!4.65!RARB;;chr4:111558135..111558198,-!p2@PITX2!0.75!4.65!PITX2;;chr15:37392724..37392757,-!p1@MEIS2!0.74!22.71!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.74!20.85!ZNF521;;chr7:42276787..42276815,-!p1@GLI3!0.73!12.84!GLI3;;chr7:19157043..19157088,-!p2@TWIST1!0.73!11.91!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!0.73!11.73!EBF1;;chr19:13136130..13136165,+!p6@NFIX!0.73!5.96!NFIX;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.73!4.65!GLIS1;;chr8:49833948..49833973,-!p2@SNAI2!0.72!30.15!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.72!21.78!DRAP1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.72!19.73!LRRFIP2;;chr3:147127177..147127194,+!p2@ZIC1!0.72!4.28!ZIC1;;chr10:119302232..119302265,+!p1@EMX2!0.72!4.28!EMX2;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.28!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!0.71!17.31!SIX1;;chr10:28035155..28035166,-!p8@MKX!0.71!4.09!MKX;;chr1:170632137..170632172,+!p10@PRRX1!0.71!4.09!PRRX1;;chr2:172949484..172949522,+!p1@DLX1!0.71!4.09!DLX1;;chr2:172967621..172967637,-!p1@DLX2!0.70!11.73!DLX2;;chr16:54320617..54320643,-!p3@IRX3!0.69!5.21!IRX3;;chr6:85473156..85473210,-!p2@TBX18!0.69!4.84!TBX18;;chr17:46132044..46132080,+!p4@NFE2L1!0.69!3.91!NFE2L1;;chr2:172950227..172950249,+!p2@DLX1!0.69!3.91!DLX1;;chr8:49833978..49833996,-!p1@SNAI2!0.68!88.78!SNAI2;;chr6:85474299..85474324,-!p1@TBX18!0.68!7.26!TBX18;;chr19:13134457..13134462,+!p5@NFIX!0.68!7.26!NFIX;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.47!BNC1;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.72!PRRX1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.67!3.72!RUNX1T1;;chr5:139487608..139487663,+!p3@PURA!0.66!8.38!PURA;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.03!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.66!3.54!RUNX1T1;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.54!FOXL1;;chr10:28034395..28034404,-!p9@MKX!0.66!3.54!MKX;;chr1:40105299..40105326,-!p1@HEYL!0.66!3.54!HEYL;;chr2:119604456..119604501,-!p2@EN1!0.66!3.54!EN1;;chr3:147110055..147110129,-!p1@ZIC4!0.66!3.54!ZIC4;;chr15:37392616..37392638,-!p2@MEIS2!0.65!12.28!MEIS2;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.58!ZBTB38;;chr7:44143997..44144008,+!p3@AEBP1!0.65!4.65!AEBP1;;chr15:42749722..42749739,-!p2@ZFP106!0.64!6.51!ZFP106;;chr17:46806067..46806097,-!p1@HOXB13!0.64!3.35!HOXB13;;chr19:13135386..13135435,+!p4@NFIX!0.64!3.35!NFIX;;chr11:46299443..46299459,+!p4@CREB3L1!0.64!3.35!CREB3L1;;chr10:63809106..63809127,+!p1@ARID5B!0.62!50.62!ARID5B;;chr3:178789522..178789564,-!p2@ZMAT3!0.62!27.92!ZMAT3;;chr3:147111505..147111529,+!p6@ZIC1!0.62!3.16!ZIC1;;chr12:54394309..54394336,+!p2@HOXC9!0.62!3.16!HOXC9;;chr7:27239703..27239715,-!p1@HOXA13!0.62!3.16!HOXA13;;chr8:23564065..23564087,-!p1@NKX2-6!0.62!3.16!NKX2-6;;chr4:4861385..4861398,+!p1@MSX1!0.61!10.42!MSX1;;chr15:37390850..37390909,-!p3@MEIS2!0.61!6.70!MEIS2;;chr14:62162258..62162269,+!p2@HIF1A!0.60!34.43!HIF1A;;chr16:54964740..54964789,+!p1@IRX5!0.60!4.65!IRX5;;chr5:72744562..72744573,-!p3@FOXD1!0.60!3.91!FOXD1;;chr15:37392593..37392607,-!p13@MEIS2!0.60!3.72!MEIS2;;chr15:80843484..80843499,+!p5@ARNT2!0.60!2.98!ARNT2;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.26!GLI2;;chr15:37390482..37390572,-!p7@MEIS2!0.59!4.28!MEIS2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.58!34.62!GLIS2;;chr15:57511589..57511608,+!p4@TCF12!0.58!2.79!TCF12;;chr5:139492456..139492489,+!p7@PURA!0.58!2.79!PURA;;chr5:3595977..3595999,+!p1@IRX1!0.58!2.79!IRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.58!2.79!HOXA9;;chr8:60031840..60031869,-!p5@TOX!0.58!2.79!TOX;;chr12:54402729..54402743,+!p3@HOXC8!0.58!2.79!HOXC8;;chr12:54410948..54410992,+!p3@HOXC5!0.58!2.79!HOXC5;;chr2:172967242..172967265,-!p2@DLX2!0.58!2.79!DLX2;;chr2:172967323..172967336,-!p4@DLX2!0.58!2.79!DLX2;;chr2:46524537..46524553,+!p1@EPAS1!0.57!338.55!EPAS1;;chr12:80085061..80085119,-!p6@PAWR!0.57!4.84!PAWR;;chr19:31840130..31840160,-!p2@TSHZ3!0.57!4.65!TSHZ3;;chr8:60031762..60031803,-!p3@TOX!0.57!4.28!TOX;;chr2:200322654..200322707,-!p2@SATB2!0.57!4.28!SATB2;;chr16:54320101..54320125,-!p4@IRX3!0.56!4.09!IRX3;;chr11:12696071..12696086,+!p3@TEAD1!0.56!3.72!TEAD1;;chr15:37392534..37392562,-!p10@MEIS2!0.56!2.98!MEIS2;;chr12:53625846..53625861,-!p6@RARG!0.56!2.61!RARG;;chr5:142780189..142780223,-!p6@NR3C1!0.56!2.61!NR3C1;;chr1:170632907..170632916,+!p22@PRRX1!0.56!2.61!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.56!2.61!FOXS1;;chr12:53625966..53626012,-!p2@RARG!0.55!8.00!RARG;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.33!SATB2;;chr5:43067636..43067674,+!p6@ZNF131!0.55!3.72!ZNF131;;chr11:46299186..46299195,+!p3@CREB3L1!0.55!2.98!CREB3L1;;chr12:124873357..124873401,-!p1@NCOR2!0.54!36.11!NCOR2;;chr3:128206762..128206781,-!p2@GATA2!0.54!18.98!GATA2;;chr10:63809077..63809089,+!p5@ARID5B!0.53!6.14!ARID5B;;chr12:48298765..48298783,-!p2@VDR!0.53!5.77!VDR;;chr16:54320646..54320672,-!p2@IRX3!0.53!4.09!IRX3;;chr17:46682321..46682362,-!p1@HOXB6!0.53!2.42!HOXB6;;chr5:2751785..2751808,-!p2@IRX2!0.53!2.42!IRX2;;chr1:119530636..119530653,-!p2@TBX15!0.53!2.42!TBX15;;chr19:33865009..33865090,+!p3@CEBPG!0.52!3.35!CEBPG;;chr19:13106214..13106382,+!p1@NFIX!0.51!67.37!NFIX;;chr9:35732647..35732678,+!p2@CREB3!0.51!16.01!CREB3;;chr3:114343768..114343822,-!p1@ZBTB20!0.51!12.47!ZBTB20;;chr19:47922750..47922795,-!p1@MEIS3!0.51!4.09!MEIS3;;chr5:72743793..72743855,-!p4@FOXD1!0.51!2.79!FOXD1;;chr5:3595934..3595957,+!p2@IRX1!0.51!2.23!IRX1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.51!2.23!RUNX1T1;;chr2:102091144..102091183,-!p2@RFX8!0.51!2.23!RFX8;;chr2:177001290..177001315,+!p1@HOXD3!0.51!2.23!HOXD3;;chr2:66662396..66662407,+!p4@MEIS1!0.51!2.23!MEIS1;;chr11:44331576..44331650,-!p1@ALX4!0.51!2.23!ALX4;;chr19:13135582..13135600,+!p3@NFIX!0.51!2.23!NFIX;;chr19:9609272..9609297,-!p1@ZNF560!0.51!2.23!ZNF560;;chr2:71127699..71127744,+!p1@VAX2!0.50!5.21!VAX2;;chr11:707063..707088,-!p4@DEAF1!0.50!2.98!DEAF1;;chr15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F586!0.15!0.74!ZNF586;;chr16:30798476..30798483,-!p2@ZNF629!0.15!0.74!ZNF629;;chr7:1577111..1577132,+!p4@MAFK!0.15!0.56!MAFK;;chr9:77112244..77112262,+!p1@RORB!0.15!0.56!RORB;;chr22:29196433..29196445,-!p4@XBP1!0.15!0.56!XBP1;;chr12:51157837..51157892,+!p1@ATF1!0.14!26.43!ATF1;;chr14:64971461..64971542,+!p1@ZBTB1!0.14!24.75!ZBTB1;;chr1:150849047..150849082,-!p1@ARNT!0.14!18.80!ARNT;;chr20:39946279..39946356,-!p1@ZHX3!0.14!18.61!ZHX3;;chr6:33285505..33285529,-!p1@ZBTB22!0.14!7.82!ZBTB22;;chr19:52643169..52643199,-!p1@ZNF616!0.14!6.70!ZNF616;;chr8:124286775..124286860,-!p2@ZHX1!0.14!4.65!ZHX1;;chrX:48900899..48900917,-!p2@TFE3!0.14!4.65!TFE3;;chr9:35732561..35732587,+!p3@CREB3!0.14!4.47!CREB3;;chr17:38498402..38498445,+!p3@RARA!0.14!3.72!RARA;;chr1:151043216..151043256,+!p1@GABPB2!0.14!3.54!GABPB2;;chr6:134274295..134274308,+!p2@TBPL1!0.14!3.35!TBPL1;;chr6:43337255..43337329,-!p2@ZNF318!0.14!2.79!ZNF318;;chr8:116681409..116681431,-!p2@TRPS1!0.14!2.61!TRPS1;;chr15:31618903..31618962,+!p3@KLF13!0.14!2.61!KLF13;;chr19:36705547..36705597,-!p1@ZNF565!0.14!2.42!ZNF565;;chr18:51750928..51750942,-!p4@MBD2!0.14!2.23!MBD2;;chr22:46546406..46546440,+!p1@PPARA!0.14!2.23!PPARA;;chr19:56879472..56879529,+!p2@ZNF542!0.14!1.86!ZNF542;;chr1:151043266..151043295,+!p2@GABPB2!0.14!1.86!GABPB2;;chr7:86781778..86781789,+!p4@DMTF1!0.14!1.68!DMTF1;;chr4:146402843..146402864,+!p3@SMAD1!0.14!1.68!SMAD1;;chr14:100705587..100705600,+!p5@YY1!0.14!1.49!YY1;;chr14:24584138..24584192,-!p2@NRL!0.14!1.12!NRL;;chr20:49547554..49547563,-!p6@ADNP!0.14!1.12!ADNP;;chr9:130952713..130952727,-!p3@CIZ1!0.14!1.12!CIZ1;;chrX:106960249..106960260,-!p5@TSC22D3!0.14!1.12!TSC22D3;;chr7:27788205..27788255,+!p2@TAX1BP1!0.14!1.12!TAX1BP1;;chr16:30582888..30582923,-!p3@ZNF688!0.14!1.12!ZNF688;;chr15:66994615..66994630,+!p3@SMAD6!0.14!0.93!SMAD6;;chr17:42297226..42297246,-!p14@UBTF!0.14!0.93!UBTF;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.14!0.93!ZNF497;;chr12:49445907..49445923,-!p2@MLL2!0.14!0.93!MLL2;;chr14:62193465..62193490,+!p7@HIF1A!0.14!0.93!HIF1A;;chr6:31515311..31515330,+!p3@NFKBIL1!0.14!0.93!NFKBIL1;;chr8:116681247..116681261,-!p8@TRPS1!0.14!0.74!TRPS1;;chr22:41697484..41697496,+!p3@ZC3H7B!0.14!0.74!ZC3H7B;;chr2:148779187..148779222,+!p5@MBD5!0.14!0.74!MBD5;;chr3:44626359..44626387,+!p4@ZNF197!0.14!0.74!ZNF197;;chr12:80084137..80084165,-!p10@PAWR!0.14!0.74!PAWR;;chr11:47279248..47279264,+!p3@NR1H3!0.14!0.56!NR1H3;;chr12:80083689..80083706,-!p16@PAWR!0.14!0.56!PAWR;;chr13:73636516..73636532,+!p3@KLF5!0.14!0.56!KLF5;;chr7:74072282..74072287,+!p9@GTF2I!0.14!0.56!GTF2I;;chr22:21355896..21355920,-!p4@THAP7!0.14!0.56!THAP7;;chr2:145274998..145275012,-!p13@ZEB2!0.14!0.56!ZEB2;;chr3:37217544..37217586,-!p6@LRRFIP2!0.14!0.56!LRRFIP2;;chr22:19748231..19748317,+!p1@TBX1!0.14!0.37!TBX1;;chr22:46567171..46567203,+!p6@PPARA!0.14!0.37!PPARA;;chr2:102091478..102091490,-!p3@RFX8!0.14!0.37!RFX8;;chr2:119605233..119605245,-!p8@EN1!0.14!0.37!EN1;;chr2:145147310..145147339,-!p20@ZEB2!0.14!0.37!ZEB2;;chr2:145275982..145276003,-!p7@ZEB2!0.14!0.37!ZEB2;;chr2:145277792..145277808,-!p15@ZEB2!0.14!0.37!ZEB2;;chr2:176969124..176969155,+!p5@HOXD11!0.14!0.37!HOXD11;;chr2:176969179..176969226,+!p2@HOXD11!0.14!0.37!HOXD11;;chr2:177001268..177001287,+!p3@HOXD3!0.14!0.37!HOXD3;;chr2:177001336..177001357,+!p2@HOXD3!0.14!0.37!HOXD3;;chr2:177001366..177001379,+!p4@HOXD3!0.14!0.37!HOXD3;;chr2:177053386..177053402,+!p1@HOXD1!0.14!0.37!HOXD1;;chr2:191885737..191885750,-!p4@STAT1!0.14!0.37!STAT1;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=

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FF:11553-120C5: Difference between revisions

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Revision as of 15:23, 15 May 2017

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0