FF:10028-101E1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004739 | ||
|accession_numbers=CAGE;DRX008747;DRR009619;DRZ001044;DRZ002429;DRZ012394;DRZ013779 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002046,UBERON:0000479,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010028 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520adult%252c%2520pool1.CNhs10634.10028-101E1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520adult%252c%2520pool1.CNhs10634.10028-101E1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520adult%252c%2520pool1.CNhs10634.10028-101E1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thyroid%252c%2520adult%252c%2520pool1.CNhs10634.10028-101E1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thyroid%252c%2520adult%252c%2520pool1.CNhs10634.10028-101E1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10028-101E1 | |id=FF:10028-101E1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010028 | ||
|is_obsolete= | |||
|library_id=CNhs10634 | |||
|library_id_phase_based=2:CNhs10634 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10028 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10028 | |||
|name=thyroid, adult, pool1 | |name=thyroid, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10634,LSID657,release008,COMPLETED | |profile_hcage=CNhs10634,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -19 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -19 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.01E+03 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.92447701001179e-206!GO:0005737;cytoplasm;2.81545172041577e-186!GO:0043226;organelle;2.83705222964602e-157!GO:0043229;intracellular organelle;7.16602681524078e-157!GO:0043231;intracellular membrane-bound organelle;8.39169249023293e-151!GO:0043227;membrane-bound organelle;8.39169249023293e-151!GO:0044444;cytoplasmic part;5.80325634086356e-133!GO:0044422;organelle part;1.89133737242286e-93!GO:0044446;intracellular organelle part;6.37589028783684e-92!GO:0005515;protein binding;7.38591170956105e-89!GO:0032991;macromolecular complex;3.4992631489042e-68!GO:0030529;ribonucleoprotein complex;6.81807949091654e-61!GO:0044238;primary metabolic process;3.54485237992637e-59!GO:0044237;cellular metabolic process;5.01669946184888e-58!GO:0043170;macromolecule metabolic process;5.64458372040204e-54!GO:0003723;RNA binding;2.31033803828203e-53!GO:0005739;mitochondrion;2.31033803828203e-53!GO:0043233;organelle lumen;2.31033803828203e-53!GO:0031974;membrane-enclosed lumen;2.31033803828203e-53!GO:0044428;nuclear part;4.49826581408493e-48!GO:0005634;nucleus;5.56472903028522e-47!GO:0033036;macromolecule localization;1.13975245751571e-46!GO:0015031;protein transport;4.51342136105614e-46!GO:0031090;organelle membrane;5.22530644610551e-46!GO:0045184;establishment of protein localization;1.54469225795982e-43!GO:0008104;protein localization;1.56070803147136e-43!GO:0016043;cellular component organization and biogenesis;3.5528389392863e-39!GO:0019538;protein metabolic process;4.17981135330289e-39!GO:0005840;ribosome;1.40965934511256e-36!GO:0044429;mitochondrial part;2.23217733815447e-36!GO:0006412;translation;4.16574800513617e-34!GO:0043234;protein complex;7.1344085647766e-34!GO:0044260;cellular macromolecule metabolic process;7.49417684440611e-33!GO:0044267;cellular protein metabolic process;2.38213418636818e-32!GO:0006396;RNA processing;9.04659874009179e-32!GO:0031975;envelope;1.63181745701709e-31!GO:0031967;organelle envelope;1.75749082568041e-31!GO:0010467;gene expression;3.12917963403875e-31!GO:0003735;structural constituent of ribosome;7.42268489044869e-31!GO:0046907;intracellular transport;1.05920789042473e-30!GO:0031981;nuclear lumen;2.76541260955172e-30!GO:0016071;mRNA metabolic process;4.72090631003362e-30!GO:0005829;cytosol;5.61659270820539e-30!GO:0006886;intracellular protein transport;4.29986013848254e-29!GO:0008380;RNA splicing;1.22437765171181e-28!GO:0043283;biopolymer metabolic process;2.3714051022461e-27!GO:0009058;biosynthetic process;3.34959756606231e-27!GO:0033279;ribosomal subunit;4.75220127906697e-27!GO:0009059;macromolecule biosynthetic process;3.74248356506916e-26!GO:0065003;macromolecular complex assembly;3.07378707045917e-25!GO:0044249;cellular biosynthetic process;6.24735804027868e-25!GO:0006397;mRNA processing;7.78948554218645e-25!GO:0022607;cellular component assembly;7.59584899029665e-24!GO:0005740;mitochondrial envelope;1.17502748532277e-23!GO:0031966;mitochondrial membrane;5.62628399579804e-23!GO:0019866;organelle inner membrane;1.06295350964083e-21!GO:0005783;endoplasmic reticulum;1.85191943597671e-21!GO:0005681;spliceosome;6.45594635379621e-21!GO:0005743;mitochondrial inner membrane;8.91376013211187e-21!GO:0005654;nucleoplasm;1.04522161389674e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.17604148188774e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.09782334720861e-20!GO:0006119;oxidative phosphorylation;4.6529329398411e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.7332362655832e-19!GO:0051649;establishment of cellular localization;1.14909246454523e-18!GO:0051641;cellular localization;1.4044814149746e-18!GO:0005794;Golgi apparatus;2.33914578258877e-18!GO:0012505;endomembrane system;2.95155958534485e-18!GO:0008134;transcription factor binding;3.94216507836934e-18!GO:0006457;protein folding;8.29161374164409e-18!GO:0044445;cytosolic part;1.80791380252575e-17!GO:0044451;nucleoplasm part;2.70132352001865e-17!GO:0006996;organelle organization and biogenesis;1.18308069828414e-16!GO:0048770;pigment granule;2.80529448087382e-16!GO:0042470;melanosome;2.80529448087382e-16!GO:0016192;vesicle-mediated transport;4.62915636524709e-16!GO:0031980;mitochondrial lumen;7.96120038647085e-16!GO:0005759;mitochondrial matrix;7.96120038647085e-16!GO:0043228;non-membrane-bound organelle;1.03532203550964e-15!GO:0043232;intracellular non-membrane-bound organelle;1.03532203550964e-15!GO:0015935;small ribosomal subunit;1.73753603253213e-15!GO:0044455;mitochondrial membrane part;4.95531142766322e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;9.96592702750401e-15!GO:0044265;cellular macromolecule catabolic process;1.02277342987214e-14!GO:0005746;mitochondrial respiratory chain;1.17180136328486e-14!GO:0000166;nucleotide binding;1.43534596833818e-14!GO:0022618;protein-RNA complex assembly;1.47476849102939e-14!GO:0019941;modification-dependent protein catabolic process;2.11733923996228e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.11733923996228e-14!GO:0006512;ubiquitin cycle;2.15066940185087e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.58214254712402e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.29960794871358e-14!GO:0044257;cellular protein catabolic process;4.6845632766586e-14!GO:0044432;endoplasmic reticulum part;4.92076060640568e-14!GO:0006605;protein targeting;5.85724954218957e-14!GO:0016070;RNA metabolic process;9.25118577001789e-14!GO:0016874;ligase activity;1.51422683614768e-13!GO:0003676;nucleic acid binding;2.22904306411648e-13!GO:0044248;cellular catabolic process;2.6298872682184e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.04018429562233e-13!GO:0003954;NADH dehydrogenase activity;3.04018429562233e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.04018429562233e-13!GO:0048193;Golgi vesicle transport;3.48007662004222e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.99561031251696e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.70912023471816e-13!GO:0016462;pyrophosphatase activity;5.23867975964239e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;6.45327935422497e-13!GO:0015934;large ribosomal subunit;1.16410594809188e-12!GO:0043285;biopolymer catabolic process;2.22133265637167e-12!GO:0051082;unfolded protein binding;2.38331588104002e-12!GO:0017111;nucleoside-triphosphatase activity;3.67114188952175e-12!GO:0003712;transcription cofactor activity;4.15825580047809e-12!GO:0008092;cytoskeletal protein binding;4.94516918691965e-12!GO:0008135;translation factor activity, nucleic acid binding;5.39139242719662e-12!GO:0006461;protein complex assembly;9.86808091657604e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.13300278972549e-11!GO:0009057;macromolecule catabolic process;1.92375914576009e-11!GO:0030163;protein catabolic process;2.12604634239125e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.79165150890639e-11!GO:0045271;respiratory chain complex I;2.79165150890639e-11!GO:0005747;mitochondrial respiratory chain complex I;2.79165150890639e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.29166662204752e-11!GO:0042773;ATP synthesis coupled electron transport;3.29166662204752e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.04633066334194e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.6390599299944e-11!GO:0016604;nuclear body;1.01416513506054e-10!GO:0005730;nucleolus;1.07624167347014e-10!GO:0051186;cofactor metabolic process;1.48070067113418e-10!GO:0005761;mitochondrial ribosome;1.95493840675378e-10!GO:0000313;organellar ribosome;1.95493840675378e-10!GO:0050794;regulation of cellular process;3.6343794014155e-10!GO:0005773;vacuole;3.9963802530467e-10!GO:0008565;protein transporter activity;4.98522839384751e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.97742727455605e-10!GO:0006366;transcription from RNA polymerase II promoter;6.40580974066369e-10!GO:0043412;biopolymer modification;6.59527359171101e-10!GO:0012501;programmed cell death;6.66329293075677e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.81801119298889e-10!GO:0005789;endoplasmic reticulum membrane;6.90469993296847e-10!GO:0006915;apoptosis;7.78627962650401e-10!GO:0016564;transcription repressor activity;8.76413898515139e-10!GO:0005793;ER-Golgi intermediate compartment;9.31948254698581e-10!GO:0006913;nucleocytoplasmic transport;9.70445321959114e-10!GO:0050789;regulation of biological process;1.08837446957416e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.17422570620828e-09!GO:0000375;RNA splicing, via transesterification reactions;1.17422570620828e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.17422570620828e-09!GO:0031982;vesicle;1.44207782801596e-09!GO:0017076;purine nucleotide binding;1.55187823298948e-09!GO:0016607;nuclear speck;1.69862355987541e-09!GO:0051169;nuclear transport;2.08788269372042e-09!GO:0048523;negative regulation of cellular process;2.08788269372042e-09!GO:0003743;translation initiation factor activity;2.10571973966999e-09!GO:0006446;regulation of translational initiation;2.1759323667698e-09!GO:0005768;endosome;2.60376818964832e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.83077052028653e-09!GO:0008219;cell death;2.9491867366627e-09!GO:0016265;death;2.9491867366627e-09!GO:0031410;cytoplasmic vesicle;2.97658333495834e-09!GO:0006464;protein modification process;3.03781412852038e-09!GO:0006413;translational initiation;3.21983541161319e-09!GO:0030036;actin cytoskeleton organization and biogenesis;3.3748505760502e-09!GO:0005635;nuclear envelope;6.15547738980816e-09!GO:0000323;lytic vacuole;6.36042312331361e-09!GO:0005764;lysosome;6.36042312331361e-09!GO:0031965;nuclear membrane;6.97337515984557e-09!GO:0032553;ribonucleotide binding;7.08932997807606e-09!GO:0032555;purine ribonucleotide binding;7.08932997807606e-09!GO:0031988;membrane-bound vesicle;8.87874203965295e-09!GO:0016023;cytoplasmic membrane-bound vesicle;1.63989584270052e-08!GO:0008639;small protein conjugating enzyme activity;1.6891962021541e-08!GO:0019829;cation-transporting ATPase activity;2.44988502727714e-08!GO:0043687;post-translational protein modification;2.85745489356839e-08!GO:0009055;electron carrier activity;2.9676523447322e-08!GO:0004842;ubiquitin-protein ligase activity;2.97381915167338e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.31235697440794e-08!GO:0030029;actin filament-based process;5.64939516471732e-08!GO:0009056;catabolic process;5.97930546962427e-08!GO:0006732;coenzyme metabolic process;6.22619351332145e-08!GO:0019787;small conjugating protein ligase activity;6.41847014770415e-08!GO:0017038;protein import;7.50092702032799e-08!GO:0048519;negative regulation of biological process;8.0847181160074e-08!GO:0045333;cellular respiration;8.37141839271121e-08!GO:0044431;Golgi apparatus part;1.26421765481681e-07!GO:0006259;DNA metabolic process;1.54492512962443e-07!GO:0048475;coated membrane;1.58748824876858e-07!GO:0030117;membrane coat;1.58748824876858e-07!GO:0003714;transcription corepressor activity;1.88063234930047e-07!GO:0009060;aerobic respiration;2.3542223244807e-07!GO:0015986;ATP synthesis coupled proton transport;3.36109562966528e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.36109562966528e-07!GO:0051246;regulation of protein metabolic process;4.44566737505055e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.1804143853945e-07!GO:0003779;actin binding;7.40825536666114e-07!GO:0031324;negative regulation of cellular metabolic process;1.21573639663673e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.22742954519802e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.22742954519802e-06!GO:0003924;GTPase activity;1.49840013431585e-06!GO:0065007;biological regulation;1.64021101535609e-06!GO:0044453;nuclear membrane part;1.74085630266273e-06!GO:0030120;vesicle coat;1.76545959539266e-06!GO:0030662;coated vesicle membrane;1.76545959539266e-06!GO:0007264;small GTPase mediated signal transduction;1.80249010095235e-06!GO:0005770;late endosome;2.22592034149715e-06!GO:0016481;negative regulation of transcription;2.28307751397348e-06!GO:0006099;tricarboxylic acid cycle;2.28342294973482e-06!GO:0046356;acetyl-CoA catabolic process;2.28342294973482e-06!GO:0016881;acid-amino acid ligase activity;2.45296659161064e-06!GO:0005525;GTP binding;2.77795851420945e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.21783996384363e-06!GO:0019899;enzyme binding;3.35991645958731e-06!GO:0016887;ATPase activity;3.8643048594419e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.13063549183467e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.13063549183467e-06!GO:0009892;negative regulation of metabolic process;4.14752717713683e-06!GO:0046034;ATP metabolic process;4.15551032145994e-06!GO:0030554;adenyl nucleotide binding;4.4057521086674e-06!GO:0030133;transport vesicle;5.07892008162044e-06!GO:0042254;ribosome biogenesis and assembly;6.1892624945018e-06!GO:0006163;purine nucleotide metabolic process;6.30583099305294e-06!GO:0009150;purine ribonucleotide metabolic process;6.34926891906124e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.36023707477563e-06!GO:0009199;ribonucleoside triphosphate metabolic process;6.46395598081031e-06!GO:0015629;actin cytoskeleton;6.81401709869257e-06!GO:0009141;nucleoside triphosphate metabolic process;6.84519257765723e-06!GO:0016568;chromatin modification;7.06152254639264e-06!GO:0005788;endoplasmic reticulum lumen;7.43810665705792e-06!GO:0031252;leading edge;7.48954401464118e-06!GO:0051170;nuclear import;7.48954401464118e-06!GO:0009259;ribonucleotide metabolic process;7.57474424761792e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.52224993834513e-06!GO:0005643;nuclear pore;9.2068620500335e-06!GO:0006084;acetyl-CoA metabolic process;9.31682808405506e-06!GO:0051789;response to protein stimulus;9.31682808405506e-06!GO:0006986;response to unfolded protein;9.31682808405506e-06!GO:0003713;transcription coactivator activity;9.338887274048e-06!GO:0042623;ATPase activity, coupled;9.59570839357433e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.8795845664338e-06!GO:0016044;membrane organization and biogenesis;1.00702172491915e-05!GO:0006606;protein import into nucleus;1.04639816080425e-05!GO:0005524;ATP binding;1.04639816080425e-05!GO:0000139;Golgi membrane;1.21082289478268e-05!GO:0050657;nucleic acid transport;1.21082289478268e-05!GO:0051236;establishment of RNA localization;1.21082289478268e-05!GO:0050658;RNA transport;1.21082289478268e-05!GO:0008654;phospholipid biosynthetic process;1.21082289478268e-05!GO:0006754;ATP biosynthetic process;1.37833342621575e-05!GO:0006753;nucleoside phosphate metabolic process;1.37833342621575e-05!GO:0032559;adenyl ribonucleotide binding;1.42308855369257e-05!GO:0006613;cotranslational protein targeting to membrane;1.57260844616808e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.61391118000841e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.61391118000841e-05!GO:0000151;ubiquitin ligase complex;1.65408481783921e-05!GO:0005798;Golgi-associated vesicle;1.66190170418682e-05!GO:0006403;RNA localization;1.75834670841561e-05!GO:0045259;proton-transporting ATP synthase complex;2.01446005426683e-05!GO:0043069;negative regulation of programmed cell death;2.13492628762747e-05!GO:0009109;coenzyme catabolic process;2.23452948278103e-05!GO:0044440;endosomal part;2.3084966713268e-05!GO:0010008;endosome membrane;2.3084966713268e-05!GO:0043066;negative regulation of apoptosis;2.44201008446602e-05!GO:0065002;intracellular protein transport across a membrane;2.57466610797889e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.59105383976513e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.59105383976513e-05!GO:0032446;protein modification by small protein conjugation;2.75103867913225e-05!GO:0032561;guanyl ribonucleotide binding;2.91780574151645e-05!GO:0019001;guanyl nucleotide binding;2.91780574151645e-05!GO:0000245;spliceosome assembly;3.33596659043711e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.39939049933083e-05!GO:0008361;regulation of cell size;3.68465749229528e-05!GO:0042981;regulation of apoptosis;3.69722658436348e-05!GO:0051187;cofactor catabolic process;3.90826358729374e-05!GO:0016567;protein ubiquitination;3.98062634593689e-05!GO:0030532;small nuclear ribonucleoprotein complex;4.03368562576587e-05!GO:0019222;regulation of metabolic process;4.14550793150788e-05!GO:0016563;transcription activator activity;4.14788586264386e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;4.22780050064974e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.23508027592896e-05!GO:0004812;aminoacyl-tRNA ligase activity;4.23508027592896e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.23508027592896e-05!GO:0016049;cell growth;4.73416613070118e-05!GO:0004298;threonine endopeptidase activity;4.95460980758641e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.11009316499862e-05!GO:0005791;rough endoplasmic reticulum;5.23630404327331e-05!GO:0051188;cofactor biosynthetic process;5.49558811325501e-05!GO:0043067;regulation of programmed cell death;5.53249042845551e-05!GO:0004386;helicase activity;5.66824436336039e-05!GO:0006164;purine nucleotide biosynthetic process;5.68204333954503e-05!GO:0009152;purine ribonucleotide biosynthetic process;5.95748152867709e-05!GO:0006323;DNA packaging;6.68006344948369e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.98879609250814e-05!GO:0008026;ATP-dependent helicase activity;7.01234968270339e-05!GO:0006091;generation of precursor metabolites and energy;7.22053050420429e-05!GO:0030867;rough endoplasmic reticulum membrane;7.72870516216563e-05!GO:0006793;phosphorus metabolic process;8.35840673070091e-05!GO:0006796;phosphate metabolic process;8.35840673070091e-05!GO:0042802;identical protein binding;9.71159819552488e-05!GO:0043038;amino acid activation;9.95463261535336e-05!GO:0006418;tRNA aminoacylation for protein translation;9.95463261535336e-05!GO:0043039;tRNA aminoacylation;9.95463261535336e-05!GO:0005667;transcription factor complex;0.000100894511613547!GO:0009260;ribonucleotide biosynthetic process;0.000102056558255575!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000102468683239794!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000102488502308769!GO:0003724;RNA helicase activity;0.00010701887642935!GO:0006950;response to stress;0.000109032854117272!GO:0006916;anti-apoptosis;0.000111031574120539!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000112140931741132!GO:0051427;hormone receptor binding;0.000123323841514363!GO:0001558;regulation of cell growth;0.000131902499183255!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000136032643466952!GO:0043566;structure-specific DNA binding;0.000144349715363421!GO:0001666;response to hypoxia;0.000146313535193098!GO:0016859;cis-trans isomerase activity;0.000150777776211325!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000161000106964527!GO:0046930;pore complex;0.000164993218162864!GO:0006612;protein targeting to membrane;0.000192556483970539!GO:0051028;mRNA transport;0.000193853431600906!GO:0006399;tRNA metabolic process;0.000220433176916133!GO:0043021;ribonucleoprotein binding;0.000230619952969423!GO:0005741;mitochondrial outer membrane;0.000231646783193353!GO:0019867;outer membrane;0.000244480866972236!GO:0031968;organelle outer membrane;0.000245334216038625!GO:0035257;nuclear hormone receptor binding;0.000246154815857234!GO:0051128;regulation of cellular component organization and biogenesis;0.000249501712678051!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000257395036778423!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000268969800032223!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000287358612155095!GO:0045892;negative regulation of transcription, DNA-dependent;0.000288453259436318!GO:0048471;perinuclear region of cytoplasm;0.000327556923797181!GO:0016491;oxidoreductase activity;0.000329350922475042!GO:0046474;glycerophospholipid biosynthetic process;0.000383091628224777!GO:0016310;phosphorylation;0.000414472780722736!GO:0009108;coenzyme biosynthetic process;0.000414472780722736!GO:0030118;clathrin coat;0.000431455086063175!GO:0005769;early endosome;0.000443238403352563!GO:0007005;mitochondrion organization and biogenesis;0.000465973567732505!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000520941065890921!GO:0033116;ER-Golgi intermediate compartment membrane;0.00052615533904839!GO:0005774;vacuolar membrane;0.000529361194640097!GO:0007265;Ras protein signal transduction;0.000553275796489517!GO:0050662;coenzyme binding;0.000572232082823659!GO:0005905;coated pit;0.000586314553728259!GO:0007243;protein kinase cascade;0.00059150741052034!GO:0006897;endocytosis;0.00060195723835296!GO:0010324;membrane invagination;0.00060195723835296!GO:0019843;rRNA binding;0.000615477664456797!GO:0006752;group transfer coenzyme metabolic process;0.000622519178951335!GO:0045786;negative regulation of progression through cell cycle;0.000748120667247096!GO:0003697;single-stranded DNA binding;0.000777998547297844!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000959113577394728!GO:0006364;rRNA processing;0.000959113577394728!GO:0048522;positive regulation of cellular process;0.000974222562348368!GO:0000314;organellar small ribosomal subunit;0.0010024023011172!GO:0005763;mitochondrial small ribosomal subunit;0.0010024023011172!GO:0016072;rRNA metabolic process;0.00108657646758747!GO:0006979;response to oxidative stress;0.00114468672476046!GO:0043623;cellular protein complex assembly;0.00122326038015338!GO:0046467;membrane lipid biosynthetic process;0.00128707364175457!GO:0009117;nucleotide metabolic process;0.00131827151815928!GO:0008186;RNA-dependent ATPase activity;0.00133114246216938!GO:0051920;peroxiredoxin activity;0.00134322261042807!GO:0007010;cytoskeleton organization and biogenesis;0.00136610141922263!GO:0006650;glycerophospholipid metabolic process;0.00146066706259565!GO:0006402;mRNA catabolic process;0.00151848363424698!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00153855561170036!GO:0045454;cell redox homeostasis;0.00158383514841283!GO:0030119;AP-type membrane coat adaptor complex;0.00163134588984151!GO:0046489;phosphoinositide biosynthetic process;0.0016768008120616!GO:0005762;mitochondrial large ribosomal subunit;0.00186310546339985!GO:0000315;organellar large ribosomal subunit;0.00186310546339985!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00191176369318972!GO:0030027;lamellipodium;0.00191176369318972!GO:0051168;nuclear export;0.00197970440647101!GO:0040008;regulation of growth;0.00222527964368067!GO:0006414;translational elongation;0.00228166190081053!GO:0051276;chromosome organization and biogenesis;0.0023694638073536!GO:0030131;clathrin adaptor complex;0.00238412029314604!GO:0051087;chaperone binding;0.00243719399649446!GO:0031072;heat shock protein binding;0.0025029822036475!GO:0005885;Arp2/3 protein complex;0.00256115115467184!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00256115115467184!GO:0044437;vacuolar part;0.00261482540894202!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00265488421727558!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00265488421727558!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00265488421727558!GO:0003702;RNA polymerase II transcription factor activity;0.00275427050640601!GO:0008154;actin polymerization and/or depolymerization;0.00280103244995992!GO:0016197;endosome transport;0.00326967274774184!GO:0033673;negative regulation of kinase activity;0.00331727672834057!GO:0006469;negative regulation of protein kinase activity;0.00331727672834057!GO:0031323;regulation of cellular metabolic process;0.00335005710053078!GO:0045941;positive regulation of transcription;0.00341794297676434!GO:0048500;signal recognition particle;0.00351564395780391!GO:0006974;response to DNA damage stimulus;0.00354720742314772!GO:0043488;regulation of mRNA stability;0.00354720742314772!GO:0043487;regulation of RNA stability;0.00354720742314772!GO:0004004;ATP-dependent RNA helicase activity;0.00369438344453137!GO:0005765;lysosomal membrane;0.00376287825231721!GO:0003729;mRNA binding;0.00399345350729964!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00428291626298839!GO:0015399;primary active transmembrane transporter activity;0.00428291626298839!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00428463095345091!GO:0006891;intra-Golgi vesicle-mediated transport;0.00428946455224786!GO:0030134;ER to Golgi transport vesicle;0.00431803146852405!GO:0048518;positive regulation of biological process;0.00434147675712746!GO:0031902;late endosome membrane;0.00437885392664333!GO:0051287;NAD binding;0.0044612408096178!GO:0045893;positive regulation of transcription, DNA-dependent;0.004465598917589!GO:0004576;oligosaccharyl transferase activity;0.00464725880746709!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00488100951082383!GO:0003690;double-stranded DNA binding;0.00491993118359961!GO:0022890;inorganic cation transmembrane transporter activity;0.00493278049425634!GO:0030658;transport vesicle membrane;0.0049372295725346!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00496059108284856!GO:0030041;actin filament polymerization;0.00544727663677543!GO:0031628;opioid receptor binding;0.00562751156807132!GO:0031852;mu-type opioid receptor binding;0.00562751156807132!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00564210261889324!GO:0008250;oligosaccharyl transferase complex;0.00580955494183195!GO:0030518;steroid hormone receptor signaling pathway;0.00581818104865849!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0059976599817745!GO:0006818;hydrogen transport;0.00628826499087006!GO:0015992;proton transport;0.00636822330471849!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00668290597655169!GO:0006401;RNA catabolic process;0.0066876517210305!GO:0000096;sulfur amino acid metabolic process;0.00703705158938795!GO:0046983;protein dimerization activity;0.00718635424712459!GO:0001726;ruffle;0.0071881767555683!GO:0030663;COPI coated vesicle membrane;0.00720542167441289!GO:0030126;COPI vesicle coat;0.00720542167441289!GO:0004447;iodide peroxidase activity;0.00720542167441289!GO:0051252;regulation of RNA metabolic process;0.00745989964258617!GO:0030384;phosphoinositide metabolic process;0.00757318616720639!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00762996573958579!GO:0033043;regulation of organelle organization and biogenesis;0.00762996573958579!GO:0035258;steroid hormone receptor binding;0.00777192083159209!GO:0048487;beta-tubulin binding;0.00806827985324801!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0085167285675771!GO:0045047;protein targeting to ER;0.0085167285675771!GO:0050811;GABA receptor binding;0.0085167285675771!GO:0030132;clathrin coat of coated pit;0.00880009141027689!GO:0030521;androgen receptor signaling pathway;0.00885513570828771!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00888796724724557!GO:0008286;insulin receptor signaling pathway;0.00891091004608105!GO:0043681;protein import into mitochondrion;0.00907365915418774!GO:0051348;negative regulation of transferase activity;0.00907365915418774!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00912119113020826!GO:0015002;heme-copper terminal oxidase activity;0.00912119113020826!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00912119113020826!GO:0004129;cytochrome-c oxidase activity;0.00912119113020826!GO:0030127;COPII vesicle coat;0.00981256096499892!GO:0012507;ER to Golgi transport vesicle membrane;0.00981256096499892!GO:0005048;signal sequence binding;0.00985339360418826!GO:0016740;transferase activity;0.00992081678847906!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0100740794777575!GO:0010468;regulation of gene expression;0.0102617118267851!GO:0045045;secretory pathway;0.0108809183693971!GO:0006350;transcription;0.0109999817614589!GO:0005083;small GTPase regulator activity;0.0111098814165312!GO:0005869;dynactin complex;0.011430875975584!GO:0030660;Golgi-associated vesicle membrane;0.011478516455892!GO:0032594;protein transport within lipid bilayer;0.011478516455892!GO:0032907;transforming growth factor-beta3 production;0.011478516455892!GO:0032596;protein transport into lipid raft;0.011478516455892!GO:0032910;regulation of transforming growth factor-beta3 production;0.011478516455892!GO:0032595;B cell receptor transport within lipid bilayer;0.011478516455892!GO:0033606;chemokine receptor transport within lipid bilayer;0.011478516455892!GO:0032600;chemokine receptor transport out of lipid raft;0.011478516455892!GO:0032599;protein transport out of lipid raft;0.011478516455892!GO:0032597;B cell receptor transport into lipid raft;0.011478516455892!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.011478516455892!GO:0006643;membrane lipid metabolic process;0.0117242047471563!GO:0065004;protein-DNA complex assembly;0.0120297168238958!GO:0016779;nucleotidyltransferase activity;0.0123496319543525!GO:0008312;7S RNA binding;0.0126750348831339!GO:0017022;myosin binding;0.0133299292102175!GO:0043492;ATPase activity, coupled to movement of substances;0.0134055089931348!GO:0030832;regulation of actin filament length;0.0137368512689324!GO:0008307;structural constituent of muscle;0.0138578938528295!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.014259704773365!GO:0030137;COPI-coated vesicle;0.0143271583926777!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0143504389469552!GO:0016408;C-acyltransferase activity;0.0144753441551566!GO:0032535;regulation of cellular component size;0.0147990035874115!GO:0051540;metal cluster binding;0.0150421233575883!GO:0051536;iron-sulfur cluster binding;0.0150421233575883!GO:0016853;isomerase activity;0.0154640317712938!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0157422196882188!GO:0048037;cofactor binding;0.0158638535133045!GO:0000059;protein import into nucleus, docking;0.0159056769943791!GO:0007049;cell cycle;0.0159643196583464!GO:0006984;ER-nuclear signaling pathway;0.0160820164493058!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0161316877681764!GO:0051726;regulation of cell cycle;0.0161448117652425!GO:0008430;selenium binding;0.0162981912705939!GO:0030984;kininogen binding;0.0169486019259775!GO:0004213;cathepsin B activity;0.0169486019259775!GO:0017166;vinculin binding;0.017187511585892!GO:0019904;protein domain specific binding;0.0174444697586225!GO:0003746;translation elongation factor activity;0.0176385997008976!GO:0006892;post-Golgi vesicle-mediated transport;0.0177626901319823!GO:0006376;mRNA splice site selection;0.0185730149828759!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0185730149828759!GO:0030659;cytoplasmic vesicle membrane;0.0189311176762271!GO:0009966;regulation of signal transduction;0.019386150153088!GO:0009719;response to endogenous stimulus;0.019386150153088!GO:0000074;regulation of progression through cell cycle;0.0194571254166041!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0196383387225069!GO:0006281;DNA repair;0.0198470685070085!GO:0006509;membrane protein ectodomain proteolysis;0.0204316462740978!GO:0033619;membrane protein proteolysis;0.0204316462740978!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0206156246196402!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0206156246196402!GO:0006839;mitochondrial transport;0.0206988013483496!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0210679145698527!GO:0030880;RNA polymerase complex;0.0214289568083509!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0215729818203405!GO:0046870;cadmium ion binding;0.0216922440819599!GO:0004185;serine carboxypeptidase activity;0.0217091233441156!GO:0006506;GPI anchor biosynthetic process;0.0218628581405153!GO:0030522;intracellular receptor-mediated signaling pathway;0.0218705575475307!GO:0030100;regulation of endocytosis;0.021882781403272!GO:0043022;ribosome binding;0.0223899638967898!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0236125123035127!GO:0007242;intracellular signaling cascade;0.0240117375376185!GO:0006635;fatty acid beta-oxidation;0.0242308966960537!GO:0035035;histone acetyltransferase binding;0.0242308966960537!GO:0007266;Rho protein signal transduction;0.0248214941836126!GO:0005912;adherens junction;0.0250749986571973!GO:0006590;thyroid hormone generation;0.0254669221109194!GO:0001725;stress fiber;0.0255251427659263!GO:0032432;actin filament bundle;0.0255251427659263!GO:0006383;transcription from RNA polymerase III promoter;0.0257698982677527!GO:0006611;protein export from nucleus;0.0258438014631183!GO:0006352;transcription initiation;0.0260662297449525!GO:0042158;lipoprotein biosynthetic process;0.0263068422129887!GO:0006497;protein amino acid lipidation;0.0268022128238635!GO:0005862;muscle thin filament tropomyosin;0.0268073212164189!GO:0006607;NLS-bearing substrate import into nucleus;0.0271165265814946!GO:0065009;regulation of a molecular function;0.0274215079072365!GO:0005832;chaperonin-containing T-complex;0.0283636691146119!GO:0008139;nuclear localization sequence binding;0.0290023665988033!GO:0006417;regulation of translation;0.0298575760982231!GO:0051539;4 iron, 4 sulfur cluster binding;0.0300701434836435!GO:0030176;integral to endoplasmic reticulum membrane;0.0302672902260104!GO:0006338;chromatin remodeling;0.0303460159388559!GO:0006505;GPI anchor metabolic process;0.0304749912089344!GO:0012506;vesicle membrane;0.0311573844699207!GO:0008287;protein serine/threonine phosphatase complex;0.0311881158562304!GO:0008097;5S rRNA binding;0.0328104022674158!GO:0006333;chromatin assembly or disassembly;0.0328697553365141!GO:0051101;regulation of DNA binding;0.0329090419765112!GO:0003899;DNA-directed RNA polymerase activity;0.0337297562195754!GO:0032940;secretion by cell;0.0338648079061678!GO:0048468;cell development;0.0341733068161778!GO:0003711;transcription elongation regulator activity;0.0353145021791308!GO:0050681;androgen receptor binding;0.0353145021791308!GO:0009081;branched chain family amino acid metabolic process;0.0355234112253918!GO:0008047;enzyme activator activity;0.036269116951767!GO:0008610;lipid biosynthetic process;0.0368245794857788!GO:0006026;aminoglycan catabolic process;0.0370663604547207!GO:0006027;glycosaminoglycan catabolic process;0.0370663604547207!GO:0007030;Golgi organization and biogenesis;0.0371017102793539!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0374043890751248!GO:0031032;actomyosin structure organization and biogenesis;0.0386784422614604!GO:0005684;U2-dependent spliceosome;0.0389059296880151!GO:0008270;zinc ion binding;0.0389059296880151!GO:0051452;cellular pH reduction;0.0389059296880151!GO:0051453;regulation of cellular pH;0.0389059296880151!GO:0045851;pH reduction;0.0389059296880151!GO:0044449;contractile fiber part;0.0396526741687011!GO:0018196;peptidyl-asparagine modification;0.0398905314902528!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0398905314902528!GO:0007033;vacuole organization and biogenesis;0.0399820276360503!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0399820276360503!GO:0000428;DNA-directed RNA polymerase complex;0.0399820276360503!GO:0007040;lysosome organization and biogenesis;0.0401970140799539!GO:0016363;nuclear matrix;0.0409018638648652!GO:0000097;sulfur amino acid biosynthetic process;0.041373896276656!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0414287086535757!GO:0004784;superoxide dismutase activity;0.0414287086535757!GO:0030125;clathrin vesicle coat;0.0414287086535757!GO:0030665;clathrin coated vesicle membrane;0.0414287086535757!GO:0044433;cytoplasmic vesicle part;0.041467466663756!GO:0051098;regulation of binding;0.0414907412955395!GO:0006644;phospholipid metabolic process;0.0417724834605007!GO:0032984;macromolecular complex disassembly;0.0417871619158251!GO:0005865;striated muscle thin filament;0.0425231140436511!GO:0009967;positive regulation of signal transduction;0.0427330696604765!GO:0043407;negative regulation of MAP kinase activity;0.0433440867769507!GO:0016584;nucleosome positioning;0.0436503144039832!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0440159203557037!GO:0007006;mitochondrial membrane organization and biogenesis;0.0442436633441665!GO:0044262;cellular carbohydrate metabolic process;0.0447497041472766!GO:0003756;protein disulfide isomerase activity;0.0450565302132675!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0450565302132675!GO:0042026;protein refolding;0.0454141922218403!GO:0005784;translocon complex;0.0456632259279573!GO:0046914;transition metal ion binding;0.0460223060484448!GO:0006672;ceramide metabolic process;0.0460296530493511!GO:0030016;myofibril;0.0462538029826677!GO:0005099;Ras GTPase activator activity;0.0462538029826677!GO:0051235;maintenance of localization;0.046441110947703!GO:0030695;GTPase regulator activity;0.0465650555385237!GO:0006595;polyamine metabolic process;0.0466027455360606!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0473776762363958!GO:0031529;ruffle organization and biogenesis;0.0477296017710218!GO:0017169;CDP-alcohol phosphatidyltransferase activity;0.0486867591784203!GO:0030911;TPR domain binding;0.0489140093630191!GO:0000049;tRNA binding;0.0492052255230715!GO:0030968;unfolded protein response;0.0498777022389599 | |||
|sample_id=10028 | |sample_id=10028 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=thyroid | |sample_tissue=thyroid | ||
|top_motifs=MTF1:2.09989430842;FOXO1,3,4:1.99223344769;HSF1,2:1.98357775717;PAX6:1.98115695896;SNAI1..3:1.88449012238;STAT1,3:1.74837765535;FOX{D1,D2}:1.74177677656;MAZ:1.64483096939;SP1:1.55444843932;ZEB1:1.54003155277;SPZ1:1.5053512967;AR:1.49288521168;RBPJ:1.45288630174;MEF2{A,B,C,D}:1.41453664384;HOX{A4,D4}:1.35734833861;SOX5:1.34596680854;NFATC1..3:1.22518473061;NR3C1:1.20347642001;MYOD1:1.18483948508;NFIX:1.16861155856;STAT2,4,6:1.16772484113;FOXN1:1.07100450678;PAX5:1.059098885;TGIF1:1.05397864003;TBX4,5:1.04976657842;HAND1,2:1.02647655562;PATZ1:1.02241632265;NHLH1,2:1.01851260472;TEAD1:1.00657457786;TLX1..3_NFIC{dimer}:1.00472181692;EP300:0.954414496731;HIC1:0.944228160863;CDX1,2,4:0.922904350835;FOXP3:0.919628392796;TFCP2:0.9005933962;GCM1,2:0.886500692634;BPTF:0.862500314907;HOX{A6,A7,B6,B7}:0.82093053553;ATF6:0.80275802489;PAX1,9:0.736734459299;T:0.73421064925;MYBL2:0.731162940229;IRF7:0.730486603353;RXR{A,B,G}:0.72177360338;MED-1{core}:0.685070581018;GTF2A1,2:0.683468767432;LHX3,4:0.679329386063;TFAP2B:0.673462543438;TLX2:0.671740830222;FOXQ1:0.659832643342;SREBF1,2:0.652535631659;HIF1A:0.651288100947;TBP:0.650282158683;GTF2I:0.639543631683;GFI1B:0.635398112209;HBP1_HMGB_SSRP1_UBTF:0.615466041979;XCPE1{core}:0.578679941105;CDC5L:0.577640583319;ZIC1..3:0.576759137639;PBX1:0.575811479125;TFAP2{A,C}:0.569494543456;NR5A1,2:0.552462559035;TFAP4:0.534184609031;EBF1:0.523327769857;PRDM1:0.501741683925;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499490425892;VSX1,2:0.497065597511;ZFP161:0.494096098522;NR1H4:0.482866068098;NKX3-2:0.480184978492;LMO2:0.461821244297;RFX1:0.461431074157;ESRRA:0.448983072038;MZF1:0.445000556914;IRF1,2:0.435087597413;ZNF143:0.430063576033;RFX2..5_RFXANK_RFXAP:0.387267363969;ATF2:0.380930039711;MTE{core}:0.377198035417;IKZF1:0.371203907999;ZNF384:0.355936604057;NKX2-3_NKX2-5:0.343234366647;MYFfamily:0.319804484431;ARID5B:0.309702016877;SRF:0.301441487716;HMX1:0.282784189626;NKX6-1,2:0.228024256853;REST:0.215727133893;RREB1:0.208899579151;FOX{F1,F2,J1}:0.197991361026;POU6F1:0.190601862372;ESR1:0.187855176272;NRF1:0.187849805293;FOXL1:0.186789201328;GATA4:0.172791890469;POU3F1..4:0.168569766761;EGR1..3:0.160161678629;HNF1A:0.149396552553;HNF4A_NR2F1,2:0.138497020715;ZNF238:0.138338882641;ELF1,2,4:0.112031308912;STAT5{A,B}:0.101115219367;FOXD3:0.0707226715853;ETS1,2:0.0685581473806;EN1,2:0.0554297757572;ZNF423:0.0483154578795;SMAD1..7,9:0.0309295797352;XBP1:-0.00075615647071;PRRX1,2:-0.0158095555691;CUX2:-0.0518251017607;MAFB:-0.0618278134836;LEF1_TCF7_TCF7L1,2:-0.099161174904;KLF4:-0.102463684312;SPIB:-0.107268538477;FOXA2:-0.116311837552;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.124471242358;ATF4:-0.125963068039;ZNF148:-0.127560589042;HES1:-0.152652459652;SPI1:-0.174276314316;NFY{A,B,C}:-0.17550834643;NFIL3:-0.185935469767;bHLH_family:-0.195941619388;ZBTB6:-0.201090562284;GLI1..3:-0.204025179438;SOX{8,9,10}:-0.241566275321;FOXM1:-0.250097036545;BREu{core}:-0.25274138387;RORA:-0.277644590605;FOX{I1,J2}:-0.287845352228;GATA6:-0.290450490055;GZF1:-0.291015844463;RXRA_VDR{dimer}:-0.292485426446;JUN:-0.303149172431;ELK1,4_GABP{A,B1}:-0.346287209379;TP53:-0.38946431128;UFEwm:-0.399039574009;CEBPA,B_DDIT3:-0.400324507016;NFKB1_REL_RELA:-0.41059647277;NR6A1:-0.417233374149;SOX2:-0.428230828293;GFI1:-0.453380913157;NKX2-1,4:-0.454788434686;ATF5_CREB3:-0.455347423043;FOXP1:-0.468422016577;HLF:-0.474931469657;CREB1:-0.486742632385;PPARG:-0.496541735752;SOX17:-0.515582670833;ALX1:-0.520609524157;NKX2-2,8:-0.524518244891;YY1:-0.552969332779;FOSL2:-0.553844132173;NFE2:-0.579152922421;IKZF2:-0.591677005561;DMAP1_NCOR{1,2}_SMARC:-0.617852712738;FOS_FOS{B,L1}_JUN{B,D}:-0.618296473872;NANOG:-0.631230362997;TEF:-0.63694649588;DBP:-0.647932402922;BACH2:-0.665303840776;TFDP1:-0.67668865909;RUNX1..3:-0.73465103433;PAX2:-0.756485467834;NANOG{mouse}:-0.760588975111;HMGA1,2:-0.789680939392;AIRE:-0.820507799797;ALX4:-0.836760824803;POU2F1..3:-0.841423878894;HOXA9_MEIS1:-0.857420353891;NFE2L2:-0.867226433064;POU5F1:-0.87550806156;EVI1:-0.875609740129;PAX3,7:-0.878318879524;ONECUT1,2:-0.891539592584;ADNP_IRX_SIX_ZHX:-0.935714865786;AHR_ARNT_ARNT2:-0.951910436479;OCT4_SOX2{dimer}:-0.96291013258;HOX{A5,B5}:-0.969924660235;PITX1..3:-1.00435152176;E2F1..5:-1.0074251015;NKX3-1:-1.05258916932;CRX:-1.05396650259;NFE2L1:-1.08952524645;PDX1:-1.13680920199;ZBTB16:-1.13832209652;MYB:-1.15203874473;PAX8:-1.16319565828;PAX4:-1.23001764019;TAL1_TCF{3,4,12}:-1.34602746426;TOPORS:-1.83296461244;POU1F1:-2.14685845046 | |top_motifs=MTF1:2.09989430842;FOXO1,3,4:1.99223344769;HSF1,2:1.98357775717;PAX6:1.98115695896;SNAI1..3:1.88449012238;STAT1,3:1.74837765535;FOX{D1,D2}:1.74177677656;MAZ:1.64483096939;SP1:1.55444843932;ZEB1:1.54003155277;SPZ1:1.5053512967;AR:1.49288521168;RBPJ:1.45288630174;MEF2{A,B,C,D}:1.41453664384;HOX{A4,D4}:1.35734833861;SOX5:1.34596680854;NFATC1..3:1.22518473061;NR3C1:1.20347642001;MYOD1:1.18483948508;NFIX:1.16861155856;STAT2,4,6:1.16772484113;FOXN1:1.07100450678;PAX5:1.059098885;TGIF1:1.05397864003;TBX4,5:1.04976657842;HAND1,2:1.02647655562;PATZ1:1.02241632265;NHLH1,2:1.01851260472;TEAD1:1.00657457786;TLX1..3_NFIC{dimer}:1.00472181692;EP300:0.954414496731;HIC1:0.944228160863;CDX1,2,4:0.922904350835;FOXP3:0.919628392796;TFCP2:0.9005933962;GCM1,2:0.886500692634;BPTF:0.862500314907;HOX{A6,A7,B6,B7}:0.82093053553;ATF6:0.80275802489;PAX1,9:0.736734459299;T:0.73421064925;MYBL2:0.731162940229;IRF7:0.730486603353;RXR{A,B,G}:0.72177360338;MED-1{core}:0.685070581018;GTF2A1,2:0.683468767432;LHX3,4:0.679329386063;TFAP2B:0.673462543438;TLX2:0.671740830222;FOXQ1:0.659832643342;SREBF1,2:0.652535631659;HIF1A:0.651288100947;TBP:0.650282158683;GTF2I:0.639543631683;GFI1B:0.635398112209;HBP1_HMGB_SSRP1_UBTF:0.615466041979;XCPE1{core}:0.578679941105;CDC5L:0.577640583319;ZIC1..3:0.576759137639;PBX1:0.575811479125;TFAP2{A,C}:0.569494543456;NR5A1,2:0.552462559035;TFAP4:0.534184609031;EBF1:0.523327769857;PRDM1:0.501741683925;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499490425892;VSX1,2:0.497065597511;ZFP161:0.494096098522;NR1H4:0.482866068098;NKX3-2:0.480184978492;LMO2:0.461821244297;RFX1:0.461431074157;ESRRA:0.448983072038;MZF1:0.445000556914;IRF1,2:0.435087597413;ZNF143:0.430063576033;RFX2..5_RFXANK_RFXAP:0.387267363969;ATF2:0.380930039711;MTE{core}:0.377198035417;IKZF1:0.371203907999;ZNF384:0.355936604057;NKX2-3_NKX2-5:0.343234366647;MYFfamily:0.319804484431;ARID5B:0.309702016877;SRF:0.301441487716;HMX1:0.282784189626;NKX6-1,2:0.228024256853;REST:0.215727133893;RREB1:0.208899579151;FOX{F1,F2,J1}:0.197991361026;POU6F1:0.190601862372;ESR1:0.187855176272;NRF1:0.187849805293;FOXL1:0.186789201328;GATA4:0.172791890469;POU3F1..4:0.168569766761;EGR1..3:0.160161678629;HNF1A:0.149396552553;HNF4A_NR2F1,2:0.138497020715;ZNF238:0.138338882641;ELF1,2,4:0.112031308912;STAT5{A,B}:0.101115219367;FOXD3:0.0707226715853;ETS1,2:0.0685581473806;EN1,2:0.0554297757572;ZNF423:0.0483154578795;SMAD1..7,9:0.0309295797352;XBP1:-0.00075615647071;PRRX1,2:-0.0158095555691;CUX2:-0.0518251017607;MAFB:-0.0618278134836;LEF1_TCF7_TCF7L1,2:-0.099161174904;KLF4:-0.102463684312;SPIB:-0.107268538477;FOXA2:-0.116311837552;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.124471242358;ATF4:-0.125963068039;ZNF148:-0.127560589042;HES1:-0.152652459652;SPI1:-0.174276314316;NFY{A,B,C}:-0.17550834643;NFIL3:-0.185935469767;bHLH_family:-0.195941619388;ZBTB6:-0.201090562284;GLI1..3:-0.204025179438;SOX{8,9,10}:-0.241566275321;FOXM1:-0.250097036545;BREu{core}:-0.25274138387;RORA:-0.277644590605;FOX{I1,J2}:-0.287845352228;GATA6:-0.290450490055;GZF1:-0.291015844463;RXRA_VDR{dimer}:-0.292485426446;JUN:-0.303149172431;ELK1,4_GABP{A,B1}:-0.346287209379;TP53:-0.38946431128;UFEwm:-0.399039574009;CEBPA,B_DDIT3:-0.400324507016;NFKB1_REL_RELA:-0.41059647277;NR6A1:-0.417233374149;SOX2:-0.428230828293;GFI1:-0.453380913157;NKX2-1,4:-0.454788434686;ATF5_CREB3:-0.455347423043;FOXP1:-0.468422016577;HLF:-0.474931469657;CREB1:-0.486742632385;PPARG:-0.496541735752;SOX17:-0.515582670833;ALX1:-0.520609524157;NKX2-2,8:-0.524518244891;YY1:-0.552969332779;FOSL2:-0.553844132173;NFE2:-0.579152922421;IKZF2:-0.591677005561;DMAP1_NCOR{1,2}_SMARC:-0.617852712738;FOS_FOS{B,L1}_JUN{B,D}:-0.618296473872;NANOG:-0.631230362997;TEF:-0.63694649588;DBP:-0.647932402922;BACH2:-0.665303840776;TFDP1:-0.67668865909;RUNX1..3:-0.73465103433;PAX2:-0.756485467834;NANOG{mouse}:-0.760588975111;HMGA1,2:-0.789680939392;AIRE:-0.820507799797;ALX4:-0.836760824803;POU2F1..3:-0.841423878894;HOXA9_MEIS1:-0.857420353891;NFE2L2:-0.867226433064;POU5F1:-0.87550806156;EVI1:-0.875609740129;PAX3,7:-0.878318879524;ONECUT1,2:-0.891539592584;ADNP_IRX_SIX_ZHX:-0.935714865786;AHR_ARNT_ARNT2:-0.951910436479;OCT4_SOX2{dimer}:-0.96291013258;HOX{A5,B5}:-0.969924660235;PITX1..3:-1.00435152176;E2F1..5:-1.0074251015;NKX3-1:-1.05258916932;CRX:-1.05396650259;NFE2L1:-1.08952524645;PDX1:-1.13680920199;ZBTB16:-1.13832209652;MYB:-1.15203874473;PAX8:-1.16319565828;PAX4:-1.23001764019;TAL1_TCF{3,4,12}:-1.34602746426;TOPORS:-1.83296461244;POU1F1:-2.14685845046 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10028-101E1;search_select_hide=table117:FF:10028-101E1 | |||
}} | }} | ||
Latest revision as of 12:15, 3 June 2020
| Name: | thyroid, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10634 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10634
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10634
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.111 |
| 10 | 10 | 0.00773 |
| 100 | 100 | 0.21 |
| 101 | 101 | 0.619 |
| 102 | 102 | 0.486 |
| 103 | 103 | 0.168 |
| 104 | 104 | 0.318 |
| 105 | 105 | 0.372 |
| 106 | 106 | 0.231 |
| 107 | 107 | 0.944 |
| 108 | 108 | 0.773 |
| 109 | 109 | 0.139 |
| 11 | 11 | 0.0308 |
| 110 | 110 | 0.0744 |
| 111 | 111 | 0.0184 |
| 112 | 112 | 0.915 |
| 113 | 113 | 0.543 |
| 114 | 114 | 0.0185 |
| 115 | 115 | 0.934 |
| 116 | 116 | 0.526 |
| 117 | 117 | 0.0425 |
| 118 | 118 | 0.148 |
| 119 | 119 | 0.14 |
| 12 | 12 | 0.539 |
| 120 | 120 | 0.0351 |
| 121 | 121 | 0.91 |
| 122 | 122 | 0.26 |
| 123 | 123 | 0.00971 |
| 124 | 124 | 0.934 |
| 125 | 125 | 0.28 |
| 126 | 126 | 0.352 |
| 127 | 127 | 0.572 |
| 128 | 128 | 0.274 |
| 129 | 129 | 0.514 |
| 13 | 13 | 0.232 |
| 130 | 130 | 0.231 |
| 131 | 131 | 0.408 |
| 132 | 132 | 0.0998 |
| 133 | 133 | 0.225 |
| 134 | 134 | 0.46 |
| 135 | 135 | 0.792 |
| 136 | 136 | 0.708 |
| 137 | 137 | 0.221 |
| 138 | 138 | 0.433 |
| 139 | 139 | 0.288 |
| 14 | 14 | 0.962 |
| 140 | 140 | 0.62 |
| 141 | 141 | 0.752 |
| 142 | 142 | 0.601 |
| 143 | 143 | 0.00644 |
| 144 | 144 | 0.702 |
| 145 | 145 | 0.496 |
| 146 | 146 | 0.781 |
| 147 | 147 | 0.805 |
| 148 | 148 | 0.0092 |
| 149 | 149 | 0.624 |
| 15 | 15 | 0.142 |
| 150 | 150 | 0.439 |
| 151 | 151 | 0.523 |
| 152 | 152 | 0.164 |
| 153 | 153 | 0.527 |
| 154 | 154 | 0.196 |
| 155 | 155 | 0.199 |
| 156 | 156 | 0.113 |
| 157 | 157 | 0.896 |
| 158 | 158 | 0.258 |
| 159 | 159 | 0.809 |
| 16 | 16 | 0.104 |
| 160 | 160 | 0.68 |
| 161 | 161 | 0.265 |
| 162 | 162 | 0.931 |
| 163 | 163 | 0.114 |
| 164 | 164 | 0.256 |
| 165 | 165 | 0.898 |
| 166 | 166 | 0.502 |
| 167 | 167 | 0.118 |
| 168 | 168 | 0.83 |
| 169 | 169 | 0.38 |
| 17 | 17 | 0.184 |
| 18 | 18 | 0.00671 |
| 19 | 19 | 0.929 |
| 2 | 2 | 0.509 |
| 20 | 20 | 0.282 |
| 21 | 21 | 0.497 |
| 22 | 22 | 0.971 |
| 23 | 23 | 0.619 |
| 24 | 24 | 0.697 |
| 25 | 25 | 0.621 |
| 26 | 26 | 0.013 |
| 27 | 27 | 0.832 |
| 28 | 28 | 0.79 |
| 29 | 29 | 0.0416 |
| 3 | 3 | 0.111 |
| 30 | 30 | 0.0328 |
| 31 | 31 | 0.712 |
| 32 | 32 | 0.0163 |
| 33 | 33 | 0.601 |
| 34 | 34 | 0.67 |
| 35 | 35 | 0.268 |
| 36 | 36 | 0.0071 |
| 37 | 37 | 0.239 |
| 38 | 38 | 0.753 |
| 39 | 39 | 0.322 |
| 4 | 4 | 0.259 |
| 40 | 40 | 0.167 |
| 41 | 41 | 0.134 |
| 42 | 42 | 0.219 |
| 43 | 43 | 0.117 |
| 44 | 44 | 0.681 |
| 45 | 45 | 0.376 |
| 46 | 46 | 0.0326 |
| 47 | 47 | 0.041 |
| 48 | 48 | 0.11 |
| 49 | 49 | 0.0324 |
| 5 | 5 | 0.528 |
| 50 | 50 | 0.645 |
| 51 | 51 | 0.566 |
| 52 | 52 | 0.664 |
| 53 | 53 | 0.482 |
| 54 | 54 | 0.557 |
| 55 | 55 | 0.682 |
| 56 | 56 | 0.746 |
| 57 | 57 | 0.124 |
| 58 | 58 | 0.685 |
| 59 | 59 | 0.948 |
| 6 | 6 | 0.482 |
| 60 | 60 | 0.763 |
| 61 | 61 | 0.184 |
| 62 | 62 | 0.268 |
| 63 | 63 | 0.663 |
| 64 | 64 | 0.191 |
| 65 | 65 | 0.504 |
| 66 | 66 | 0.106 |
| 67 | 67 | 0.816 |
| 68 | 68 | 0.606 |
| 69 | 69 | 0.722 |
| 7 | 7 | 0.688 |
| 70 | 70 | 0.0637 |
| 71 | 71 | 0.0199 |
| 72 | 72 | 0.92 |
| 73 | 73 | 0.508 |
| 74 | 74 | 0.278 |
| 75 | 75 | 0.0315 |
| 76 | 76 | 0.0531 |
| 77 | 77 | 0.535 |
| 78 | 78 | 0.248 |
| 79 | 79 | 0.249 |
| 8 | 8 | 0.0411 |
| 80 | 80 | 0.354 |
| 81 | 81 | 0.0502 |
| 82 | 82 | 0.369 |
| 83 | 83 | 0.41 |
| 84 | 84 | 0.428 |
| 85 | 85 | 0.461 |
| 86 | 86 | 0.498 |
| 87 | 87 | 0.408 |
| 88 | 88 | 0.798 |
| 89 | 89 | 0.856 |
| 9 | 9 | 0.857 |
| 90 | 90 | 0.0978 |
| 91 | 91 | 0.933 |
| 92 | 92 | 0.639 |
| 93 | 93 | 0.672 |
| 94 | 94 | 0.0741 |
| 95 | 95 | 0.227 |
| 96 | 96 | 0.395 |
| 97 | 97 | 0.454 |
| 98 | 98 | 0.628 |
| 99 | 99 | 0.563 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10634
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010028 human thyroid - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002046 (thyroid gland)
0000479 (tissue)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010028 (human thyroid - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)
