FF:10050-101G5: Difference between revisions

Latest revision as of 12:17, 3 June 2020

Name:	heart, adult, diseased post-infarction, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11757
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	92 years old adult
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	9070074A
catalog number	Cat:636582
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005847

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11757		CAGE		DRX008663		DRR009535

Accession ID Hg19

Library id		BAM		CTSS
CNhs11757		DRZ000960		DRZ002345

Accession ID Hg38

Library id		BAM		CTSS
CNhs11757		DRZ012310		DRZ013695

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.655
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0845
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.328
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0791
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.255
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.024
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.731
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0791
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0.0791
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0791
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.792
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0769
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0791
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.122
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.213
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0791
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.00404
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.124
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0694
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0791
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0791
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.146
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0689
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.074
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.0791
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.204
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.112
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.093
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0791
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	1.052
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.0791
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0.204
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0791
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0791
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0696
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0791
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.146
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11757

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.77945e-6
MA0003.1	MA0003.1	0.224
MA0004.1	MA0004.1	0.0203
MA0006.1	MA0006.1	0.121
MA0007.1	MA0007.1	0.333
MA0009.1	MA0009.1	0.49
MA0014.1	MA0014.1	0.442
MA0017.1	MA0017.1	0.533
MA0018.2	MA0018.2	0.364
MA0019.1	MA0019.1	0.289
MA0024.1	MA0024.1	0.835
MA0025.1	MA0025.1	0.303
MA0027.1	MA0027.1	0.378
MA0028.1	MA0028.1	1.98193e-7
MA0029.1	MA0029.1	0.195
MA0030.1	MA0030.1	0.517
MA0031.1	MA0031.1	0.483
MA0035.2	MA0035.2	0.00266
MA0038.1	MA0038.1	0.14
MA0039.2	MA0039.2	0.128
MA0040.1	MA0040.1	0.047
MA0041.1	MA0041.1	0.915
MA0042.1	MA0042.1	0.978
MA0043.1	MA0043.1	0.0055
MA0046.1	MA0046.1	0.857
MA0047.2	MA0047.2	0.278
MA0048.1	MA0048.1	0.0201
MA0050.1	MA0050.1	1.29147e-4
MA0051.1	MA0051.1	0.00711
MA0052.1	MA0052.1	3.75547e-29
MA0055.1	MA0055.1	0.383
MA0057.1	MA0057.1	0.374
MA0058.1	MA0058.1	0.00384
MA0059.1	MA0059.1	0.00123
MA0060.1	MA0060.1	0.947
MA0061.1	MA0061.1	3.45108e-9
MA0062.2	MA0062.2	2.30756e-15
MA0065.2	MA0065.2	0.126
MA0066.1	MA0066.1	0.851
MA0067.1	MA0067.1	0.0757
MA0068.1	MA0068.1	0.19
MA0069.1	MA0069.1	0.993
MA0070.1	MA0070.1	0.329
MA0071.1	MA0071.1	0.0248
MA0072.1	MA0072.1	1
MA0073.1	MA0073.1	0.98
MA0074.1	MA0074.1	0.611
MA0076.1	MA0076.1	1.45721e-10
MA0077.1	MA0077.1	0.306
MA0078.1	MA0078.1	0.57
MA0079.2	MA0079.2	0.0762
MA0080.2	MA0080.2	2.51351e-9
MA0081.1	MA0081.1	0.00176
MA0083.1	MA0083.1	0.00654
MA0084.1	MA0084.1	0.508
MA0087.1	MA0087.1	0.719
MA0088.1	MA0088.1	0.0359
MA0090.1	MA0090.1	2.25699e-4
MA0091.1	MA0091.1	0.731
MA0092.1	MA0092.1	0.497
MA0093.1	MA0093.1	0.0177
MA0099.2	MA0099.2	4.74007e-15
MA0100.1	MA0100.1	0.0151
MA0101.1	MA0101.1	3.75303e-5
MA0102.2	MA0102.2	0.0169
MA0103.1	MA0103.1	2.98116e-4
MA0104.2	MA0104.2	1.46415e-4
MA0105.1	MA0105.1	1.51072e-8
MA0106.1	MA0106.1	0.188
MA0107.1	MA0107.1	2.97469e-6
MA0108.2	MA0108.2	3.66855e-22
MA0111.1	MA0111.1	0.828
MA0112.2	MA0112.2	0.216
MA0113.1	MA0113.1	0.00234
MA0114.1	MA0114.1	0.288
MA0115.1	MA0115.1	0.00578
MA0116.1	MA0116.1	0.00289
MA0117.1	MA0117.1	0.119
MA0119.1	MA0119.1	0.56
MA0122.1	MA0122.1	0.223
MA0124.1	MA0124.1	0.827
MA0125.1	MA0125.1	0.942
MA0131.1	MA0131.1	0.188
MA0135.1	MA0135.1	0.0952
MA0136.1	MA0136.1	1.25488e-13
MA0137.2	MA0137.2	0.0741
MA0138.2	MA0138.2	0.268
MA0139.1	MA0139.1	0.431
MA0140.1	MA0140.1	0.426
MA0141.1	MA0141.1	1.69005e-5
MA0142.1	MA0142.1	0.00946
MA0143.1	MA0143.1	0.073
MA0144.1	MA0144.1	0.085
MA0145.1	MA0145.1	0.0527
MA0146.1	MA0146.1	0.128
MA0147.1	MA0147.1	2.00207e-4
MA0148.1	MA0148.1	0.926
MA0149.1	MA0149.1	0.99
MA0150.1	MA0150.1	4.78133e-4
MA0152.1	MA0152.1	0.865
MA0153.1	MA0153.1	0.743
MA0154.1	MA0154.1	0.22
MA0155.1	MA0155.1	0.293
MA0156.1	MA0156.1	5.73633e-14
MA0157.1	MA0157.1	0.11
MA0159.1	MA0159.1	0.123
MA0160.1	MA0160.1	0.00269
MA0162.1	MA0162.1	0.529
MA0163.1	MA0163.1	1.20171e-4
MA0164.1	MA0164.1	0.725
MA0258.1	MA0258.1	0.0502
MA0259.1	MA0259.1	0.0726

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11757

Novel motif	Logo	P-value
1	1	0.549
10	10	0.0439
100	100	0.63
101	101	0.963
102	102	0.382
103	103	0.158
104	104	0.466
105	105	0.357
106	106	0.801
107	107	0.0825
108	108	0.198
109	109	0.905
11	11	0.571
110	110	0.398
111	111	0.366
112	112	0.92
113	113	0.741
114	114	0.15
115	115	0.24
116	116	0.76
117	117	0.0266
118	118	0.0723
119	119	0.723
12	12	0.877
120	120	0.027
121	121	0.811
122	122	0.122
123	123	0.181
124	124	0.135
125	125	0.599
126	126	0.474
127	127	0.709
128	128	0.556
129	129	0.437
13	13	0.763
130	130	0.99
131	131	0.6
132	132	0.0223
133	133	0.994
134	134	0.339
135	135	0.919
136	136	0.25
137	137	0.397
138	138	0.519
139	139	0.276
14	14	0.477
140	140	0.917
141	141	0.522
142	142	0.694
143	143	0.00419
144	144	0.702
145	145	0.262
146	146	0.585
147	147	0.314
148	148	0.139
149	149	0.199
15	15	0.0576
150	150	0.889
151	151	0.721
152	152	0.214
153	153	0.817
154	154	0.991
155	155	0.722
156	156	0.276
157	157	0.851
158	158	0.04
159	159	0.412
16	16	0.892
160	160	0.51
161	161	0.543
162	162	0.597
163	163	0.219
164	164	0.148
165	165	0.893
166	166	0.446
167	167	0.0592
168	168	0.331
169	169	0.161
17	17	0.594
18	18	0.0878
19	19	0.219
2	2	0.119
20	20	0.398
21	21	0.974
22	22	0.23
23	23	0.604
24	24	0.207
25	25	0.473
26	26	0.262
27	27	0.982
28	28	0.458
29	29	0.00579
3	3	0.0895
30	30	0.0785
31	31	0.821
32	32	0.446
33	33	0.276
34	34	0.209
35	35	0.15
36	36	0.0213
37	37	0.402
38	38	0.874
39	39	0.386
4	4	0.844
40	40	0.51
41	41	0.27
42	42	0.0688
43	43	0.182
44	44	0.129
45	45	0.278
46	46	0.286
47	47	0.456
48	48	0.374
49	49	0.304
5	5	0.175
50	50	0.571
51	51	0.477
52	52	0.247
53	53	0.964
54	54	0.906
55	55	0.0357
56	56	0.704
57	57	0.234
58	58	0.377
59	59	0.965
6	6	0.614
60	60	0.978
61	61	0.486
62	62	0.435
63	63	0.95
64	64	0.799
65	65	0.529
66	66	0.155
67	67	0.662
68	68	0.659
69	69	0.482
7	7	0.977
70	70	0.139
71	71	0.0178
72	72	0.456
73	73	0.499
74	74	0.0114
75	75	0.0591
76	76	0.0771
77	77	0.0502
78	78	0.338
79	79	0.539
8	8	0.449
80	80	0.303
81	81	0.272
82	82	0.429
83	83	0.187
84	84	0.556
85	85	0.292
86	86	0.336
87	87	0.891
88	88	0.929
89	89	0.519
9	9	0.511
90	90	0.00213
91	91	0.937
92	92	0.612
93	93	0.407
94	94	0.00381
95	95	0.671
96	96	0.43
97	97	0.879
98	98	0.901
99	99	0.116

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11757

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:5844 myocardial infarction
FF:0010016 human heart - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
1287 (cardiovascular system disease)
7 (disease of anatomical entity)
178 (vascular disease)
326 (ischemia)
3978 (extrinsic cardiomyopathy)
114 (heart disease)
3394 (myocardial ischemia)
5844 (myocardial infarction)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0007100 (primary circulatory organ)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010016 (human heart - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005847
-|accession_numbers=CAGE;DRX008663;DRR009535;DRZ000960;DRZ002345
+|accession_numbers=CAGE;DRX008663;DRR009535;DRZ000960;DRZ002345;DRZ012310;DRZ013695
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0007100,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!2.47!297.12!NKX2-5;;chr12:52437488..52437507,+!p2@NR4A1!2.17!145.57!NR4A1;;chr4:174451370..174451387,-!p1@HAND2!1.93!83.67!HAND2;;chr7:35293685..35293718,-!p1@TBX20!1.90!79.07!TBX20;;chr19:46801639..46801699,+!p1@HIF3A!1.87!72.68!HIF3A;;chr20:62680984..62680999,-!p1@SOX18!1.80!81.27!SOX18;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.77!57.31!ZBED1;;chr8:11561684..11561751,+!p1@GATA4!1.74!54.51!GATA4;;chr1:40105299..40105326,-!p1@HEYL!1.70!48.92!HEYL;;chr1:201979743..201979762,+!p1@ELF3!1.67!45.73!ELF3;;chr5:172662303..172662320,-!p2@NKX2-5!1.66!44.93!NKX2-5;;chr14:105935396..105935413,+!p4@MTA1!1.57!36.14!MTA1;;chr20:55204351..55204377,+!p1@TFAP2C!1.55!43.93!TFAP2C;;chr1:201979703..201979721,+!p2@ELF3!1.55!34.74!ELF3;;chr15:42749722..42749739,-!p2@ZFP106!1.52!56.11!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!1.48!41.53!ZBTB16;;chr4:174451350..174451363,-!p3@HAND2!1.42!25.36!HAND2;;chr16:54320617..54320643,-!p3@IRX3!1.41!31.55!IRX3;;chr18:19749541..19749557,+!p1@GATA6!1.38!70.09!GATA6;;chr8:10588010..10588030,-!p1@SOX7!1.38!22.76!SOX7;;chr18:19749386..19749404,+!p2@GATA6!1.36!31.35!GATA6;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.36!21.77!SEBOX;;chr3:181429704..181429722,+!p1@SOX2!1.35!21.37!SOX2;;chr14:38064429..38064486,-!p1@FOXA1!1.35!21.17!FOXA1;;chr8:102504979..102505010,+!p2@GRHL2!1.33!20.57!GRHL2;;chr8:102504651..102504683,+!p1@GRHL2!1.33!20.17!GRHL2;;chr6:126070769..126070801,+!p1@HEY2!1.32!22.96!HEY2;;chr15:96869511..96869525,+!p16@NR2F2!1.30!21.17!NR2F2;;chr4:174450089..174450153,-!p2@HAND2!1.29!18.37!HAND2;;chr4:57547454..57547469,-!p1@HOPX!1.26!17.37!HOPX;;chr19:33793430..33793447,-!p1@CEBPA!1.25!70.09!CEBPA;;chr6:10415484..10415508,-!p3@TFAP2A!1.24!16.57!TFAP2A;;chr1:214161272..214161322,+!p1@PROX1!1.20!20.77!PROX1;;chr6:134210243..134210257,+!p1@TCF21!1.20!14.78!TCF21;;chr5:172662230..172662241,-!p3@NKX2-5!1.19!14.38!NKX2-5;;chr1:6479968..6479986,-!p1@HES2!1.18!13.98!HES2;;chr3:193853927..193853944,+!p1@HES1!1.16!433.10!HES1;;chr3:181429741..181429767,+!p2@SOX2!1.16!13.38!SOX2;;chr5:2751762..2751784,-!p1@IRX2!1.16!13.38!IRX2;;chr19:47523058..47523114,+!p1@NPAS1!1.15!12.98!NPAS1;;chr14:73360799..73360817,-!p1@DPF3!1.13!43.33!DPF3;;chr21:39870339..39870443,-!p1@ERG!1.13!12.58!ERG;;chr19:45908292..45908374,-!p1@PPP1R13L!1.11!104.23!PPP1R13L;;chr11:46337652..46337682,+!p16@CREB3L1!1.11!11.78!CREB3L1;;chr8:99956662..99956684,+!p1@OSR2!1.10!17.97!OSR2;;chr16:54320646..54320672,-!p2@IRX3!1.10!17.77!IRX3;;chr1:2985760..2985774,+!p1@PRDM16!1.09!11.38!PRDM16;;chr13:73633131..73633149,+!p1@KLF5!1.08!118.21!KLF5;;chr8:55370487..55370503,+!p1@SOX17!1.07!10.78!SOX17;;chr6:10419768..10419819,-!p6@TFAP2A!1.06!10.58!TFAP2A;;chr14:105935426..105935440,+!p9@MTA1!1.06!10.58!MTA1;;chr19:22193731..22193751,-!p1@ZNF208!1.03!9.78!ZNF208;;chr6:19837592..19837621,+!p1@ID4!1.02!58.31!ID4;;chr17:53342311..53342400,+!p1@HLF!1.02!10.98!HLF;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.02!9.58!SEBOX;;chr18:19749517..19749531,+!p3@GATA6!1.00!16.17!GATA6;;chr10:8096631..8096660,+!p1@GATA3!1.00!10.98!GATA3;;chr8:25902876..25902936,-!p1@EBF2!1.00!8.99!EBF2;;chr2:242556880..242556899,-!p5@THAP4!0.99!8.79!THAP4;;chr11:113930401..113930422,+!p3@ZBTB16!0.99!8.79!ZBTB16;;chr17:45928521..45928539,-!p1@SP6!0.98!8.59!SP6;;chr3:126076242..126076257,-!p1@KLF15!0.97!10.58!KLF15;;chr11:47400078..47400106,-!p1@SPI1!0.97!8.39!SPI1;;chr16:54320101..54320125,-!p4@IRX3!0.96!11.58!IRX3;;chr5:153857778..153857794,-!p1@HAND1!0.96!8.19!HAND1;;chr19:45971246..45971265,+!p1@FOSB!0.95!153.95!FOSB;;chr12:52445218..52445237,+!p1@NR4A1!0.95!103.83!NR4A1;;chr8:106330656..106330684,+!p1@ZFPM2!0.95!21.37!ZFPM2;;chr20:590944..590960,-!p1@TCF15!0.95!7.99!TCF15;;chr17:46126136..46126152,+!p1@NFE2L1!0.93!396.76!NFE2L1;;chr20:31350184..31350200,+!p1@DNMT3B!0.93!15.97!DNMT3B;;chr1:209979467..209979494,-!p1@IRF6!0.93!8.39!IRF6;;chr17:41739283..41739297,-!p1@MEOX1!0.93!7.59!MEOX1;;chr5:71803177..71803255,-!p1@ZNF366!0.93!7.59!ZNF366;;chr7:96654133..96654150,-!p1@DLX5!0.91!7.19!DLX5;;chr1:10856639..10856662,-!p2@CASZ1!0.90!6.99!CASZ1;;chr11:65554563..65554576,+!p2@OVOL1!0.90!6.99!OVOL1;;chr1:8483756..8483809,-!p5@RERE!0.89!19.77!RERE;;chr1:40367530..40367597,-!p1@MYCL1!0.89!12.78!MYCL1;;chr2:68592406..68592424,+!p1@PLEK!0.89!6.79!PLEK;;chr16:54964740..54964789,+!p1@IRX5!0.87!9.38!IRX5;;chr16:54319010..54319041,-!p8@IRX3!0.87!6.39!IRX3;;chr11:65554528..65554546,+!p1@OVOL1!0.87!6.39!OVOL1;;chr16:54320675..54320715,-!p1@IRX3!0.86!13.98!IRX3;;chr6:10412600..10412637,-!p1@TFAP2A!0.86!10.78!TFAP2A;;chr1:10754477..10754517,-!p1@CASZ1!0.86!10.58!CASZ1;;chr1:216896752..216896778,-!p1@ESRRG!0.86!6.19!ESRRG;;chr1:8483723..8483752,-!p12@RERE!0.84!9.58!RERE;;chr13:73636252..73636307,+!p2@KLF5!0.84!6.99!KLF5;;chr14:105935576..105935594,+!p11@MTA1!0.84!5.99!MTA1;;chr1:151804244..151804310,-!p1@RORC!0.84!5.99!RORC;;chr1:40367668..40367684,-!p2@MYCL1!0.84!5.99!MYCL1;;chr8:102504690..102504704,+!p3@GRHL2!0.84!5.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%252c%2520adult%252c%2520diseased%2520post-infarction%252c%2520donor1.CNhs11757.10050-101G5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%252c%2520adult%252c%2520diseased%2520post-infarction%252c%2520donor1.CNhs11757.10050-101G5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/heart%252c%2520adult%252c%2520diseased%2520post-infarction%252c%2520donor1.CNhs11757.10050-101G5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/heart%252c%2520adult%252c%2520diseased%2520post-infarction%252c%2520donor1.CNhs11757.10050-101G5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10050-101G5
 |is_a=DOID:5844;;FF:0010016
@@ Line 45: / Line 51: @@
 |library_id=CNhs11757
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+|microRNAs=
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+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10050
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10050
 |name=heart, adult, diseased post-infarction, donor1
 |namespace=FANTOM5
@@ Line 52: / Line 62: @@
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@@ Line 89: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10050-101G5;search_select_hide=table117:FF:10050-101G5
 }}

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Latest revision as of 12:17, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0