FF:10086-102B5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002107,UBERON:0002100 | |DRA_sample_Accession=CAGE@SAMD00004877 | ||
|accession_numbers=CAGE;DRX008675;DRR009547;DRZ000972;DRZ002357;DRZ012322;DRZ013707 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010086 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.58!3780.42!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.73!537.98!SEBOX;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.35!221.29!SEBOX;;chr1:27240455..27240474,-!p1@NR0B2!2.14!137.81!NR0B2;;chr19:12998003..12998021,-!p1@KLF1!2.08!120.58!KLF1;;chr19:50432453..50432468,+!p1@ATF5!2.03!5496.39!ATF5;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!107.33!PEG3;;chrX:131547625..131547644,-!p4@MBNL3!1.98!95.40!MBNL3;;chrX:48644984..48645005,+!p1@GATA1!1.95!88.78!GATA1;;chr19:4153613..4153652,+!p1@CREB3L3!1.95!87.45!CREB3L3;;chr6:1312325..1312340,+!p1@FOXQ1!1.90!125.88!FOXQ1;;chr19:33793430..33793447,-!p1@CEBPA!1.89!306.09!CEBPA;;chr1:214161272..214161322,+!p1@PROX1!1.86!98.06!PROX1;;chr7:73038839..73038862,-!p1@MLXIPL!1.86!71.55!MLXIPL;;chrX:131547596..131547609,-!p10@MBNL3!1.82!64.93!MBNL3;;chr19:46367576..46367592,+!p1@FOXA3!1.76!56.98!FOXA3;;chr12:54689532..54689551,-!p4@NFE2!1.70!49.03!NFE2;;chr12:100867627..100867652,+!p1@NR1H4!1.65!43.73!NR1H4;;chr12:100867653..100867677,+!p2@NR1H4!1.61!39.75!NR1H4;;chr19:46800289..46800327,+!p2@HIF3A!1.60!38.43!HIF3A;;chr1:199996733..199996781,+!p1@NR5A2!1.60!38.43!NR5A2;;chr12:54694758..54694805,-!p1@NFE2!1.56!42.40!NFE2;;chr12:54694653..54694672,-!p2@NFE2!1.55!34.45!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!1.50!30.48!GFI1B;;chr1:47695003..47695042,-!p2@TAL1!1.48!29.15!TAL1;;chr12:54694807..54694832,-!p3@NFE2!1.48!29.15!NFE2;;chr20:62680984..62680999,-!p1@SOX18!1.47!37.10!SOX18;;chr3:126076242..126076257,-!p1@KLF15!1.46!34.45!KLF15;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.18!HAND2;;chr19:54041669..54041697,+!p2@ZNF331!1.42!25.18!ZNF331;;chr20:43029862..43029900,+!p1@HNF4A!1.42!25.18!HNF4A;;chr16:85932760..85932775,+!p1@IRF8!1.42!25.18!IRF8;;chr20:50159198..50159299,-!p1@NFATC2!1.41!35.78!NFATC2;;chr15:53082521..53082549,-!p1@ONECUT1!1.40!23.85!ONECUT1;;chr3:126073018..126073036,-!p3@KLF15!1.40!23.85!KLF15;;chr11:47400078..47400106,-!p1@SPI1!1.40!23.85!SPI1;;chr1:201979743..201979762,+!p1@ELF3!1.37!22.53!ELF3;;chr10:94449703..94449718,+!p1@HHEX!1.36!82.15!HHEX;;chr11:16133391..16133439,-!p6@SOX6!1.35!21.20!SOX6;;chr11:47400062..47400077,-!p2@SPI1!1.35!21.20!SPI1;;chr10:51572339..51572376,+!p4@NCOA4!1.29!41.08!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!1.29!19.88!LYL1;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.55!KDM5D;;chr1:201979703..201979721,+!p2@ELF3!1.29!18.55!ELF3;;chr1:47697881..47697910,-!p4@TAL1!1.26!17.23!TAL1;;chr12:54689552..54689574,-!p6@NFE2!1.26!17.23!NFE2;;chr15:61521495..61521506,-!p5@RORA!1.26!17.23!RORA;;chr17:26694979..26695007,-!p4@SEBOX!1.23!15.90!SEBOX;;chr1:199996702..199996732,+!p5@NR5A2!1.23!15.90!NR5A2;;chr16:79634624..79634642,-!p1@MAF!1.21!59.63!MAF;;chr8:71316403..71316427,-!p6@NCOA2!1.19!17.23!NCOA2;;chr19:54058073..54058088,+!p1@ZNF331!1.19!14.58!ZNF331;;chr1:151804244..151804310,-!p1@RORC!1.19!14.58!RORC;;chr14:38064429..38064486,-!p1@FOXA1!1.19!14.58!FOXA1;;chr2:68592406..68592424,+!p1@PLEK!1.19!14.58!PLEK;;chr3:126076264..126076305,-!p2@KLF15!1.18!19.88!KLF15;;chr16:79634595..79634620,-!p2@MAF!1.17!25.18!MAF;;chr11:113930425..113930471,+!p1@ZBTB16!1.17!19.88!ZBTB16;;chr1:23857325..23857416,-!p2@E2F2!1.16!15.90!E2F2;;chrX:48644976..48644983,+!p2@GATA1!1.15!13.25!GATA1;;chr8:76319876..76319926,+!p1@HNF4G!1.15!13.25!HNF4G;;chr11:47279504..47279563,+!p1@NR1H3!1.14!29.15!NR1H3;;chr8:48650715..48650735,-!p1@CEBPD!1.13!1562.26!CEBPD;;chr11:61520075..61520136,+!p1@C11orf9!1.13!26.50!C11orf9;;chr19:46801639..46801699,+!p1@HIF3A!1.11!11.93!HIF3A;;chr20:48808064..48808086,+!p15@CEBPB!1.11!11.93!CEBPB;;chr18:55102628..55102646,+!p2@ONECUT2!1.11!11.93!ONECUT2;;chr15:60884706..60884743,-!p1@RORA!1.09!58.30!RORA;;chr10:51572408..51572454,+!p3@NCOA4!1.08!64.93!NCOA4;;chrX:131623044..131623089,-!p1@MBNL3!1.07!45.05!MBNL3;;chr2:46524897..46524911,+!p2@EPAS1!1.07!30.48!EPAS1;;chr1:23857698..23857733,-!p1@E2F2!1.07!19.88!E2F2;;chr22:29196547..29196563,-!p2@XBP1!1.06!390.90!XBP1;;chr12:54778471..54778528,-!p1@ZNF385A!1.06!10.60!ZNF385A;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.60!TCF21;;chr7:50344289..50344323,+!p1@IKZF1!1.06!10.60!IKZF1;;chr8:11561684..11561751,+!p1@GATA4!1.06!10.60!GATA4;;chr19:46806868..46806883,+!p3@HIF3A!1.06!10.60!HIF3A;;chr19:50922187..50922204,+!p1@SPIB!1.06!10.60!SPIB;;chr20:42984330..42984364,+!p2@HNF4A!1.06!10.60!HNF4A;;chr20:43030002..43030028,+!p3@HNF4A!1.06!10.60!HNF4A;;chr22:29196492..29196503,-!p3@XBP1!1.05!15.90!XBP1;;chr18:19749386..19749404,+!p2@GATA6!1.05!14.58!GATA6;;chr14:35873101..35873119,-!p6@NFKBIA!1.04!13.25!NFKBIA;;chrX:106960285..106960299,-!p1@TSC22D3!1.03!263.69!TSC22D3;;chr18:55102598..55102623,+!p1@ONECUT2!1.01!9.28!ONECUT2;;chr20:48809000..48809053,+!p12@CEBPB!1.00!11.93!CEBPB;;chr5:176738887..176738934,-!p1@MXD3!0.99!59.63!MXD3;;chr19:50435736..50435781,+!p3@ATF5!0.98!11.93!ATF5;;chr8:37963466..37963506,+!p3@ASH2L!0.97!10.60!ASH2L;;chr6:126221034..126221056,+!p13@NCOA7!0.95!7.95!NCOA7;;chr7:73038867..73038878,-!p2@MLXIPL!0.95!7.95!MLXIPL;;chr17:53344945..53344977,+!p2@HLF!0.95!7.95!HLF;;chr19:13213555..13213568,-!p5@LYL1!0.95!7.95!LYL1;;chr2:68592394..68592405,+!p2@PLEK!0.95!7.95!PLEK;;chr4:174451350..174451363,-!p3@HAND2!0.95!7.95!HAND2;;chr1:161207986..161207998,-!p2@NR1I3!0.95!7.95!NR1I3;;chr1:199996831..199996843,+!p4@NR5A2!0.95!7.95!NR5A2;;chr1:47697965..47697991,-!p7@TAL1!0.95!7.95!TAL1;;chr20:61051039..61051057,-!p1@GATA5!0.95!7.95!GATA5;;chr21:39870339..39870443,-!p1@ERG!0.95!7.95!ERG;;chr11:19263160..19263176,-!p1@E2F8!0.94!9.28!E2F8;;chr8:81398444..81398472,+!p1@ZBTB10!0.93!31.80!ZBTB10;;chr17:1959369..1959388,+!p2@HIC1!0.92!19.88!HIC1;;chrX:131622958..131622978,-!p3@MBNL3!0.92!9.28!MBNL3;;chr21:40177845..40177863,+!p1@ETS2!0.91!445.22!ETS2;;chr5:76383133..76383186,-!p2@ZBED3!0.90!14.58!ZBED3;;chr8:71316428..71316459,-!p2@NCOA2!0.90!11.93!NCOA2;;chr17:53342311..53342400,+!p1@HLF!0.90!7.95!HLF;;chr1:212782094..212782109,+!p1@ATF3!0.89!193.46!ATF3;;chr3:187463179..187463201,-!p2@BCL6!0.89!29.15!BCL6;;chr3:24536253..24536328,-!p1@THRB!0.89!13.25!THRB;;chr2:157189180..157189290,-!p1@NR4A2!0.88!35.78!NR4A2;;chr14:73360799..73360817,-!p1@DPF3!0.88!23.85!DPF3;;chr2:74229812..74229867,+!p1@TET3!0.88!17.23!TET3;;chr3:24536485..24536500,-!p3@THRB!0.88!6.63!THRB;;chr11:16403882..16403908,-!p9@SOX6!0.88!6.63!SOX6;;chr12:101869096..101869118,+!p1@SPIC!0.88!6.63!SPIC;;chr12:121416340..121416360,+!p1@HNF1A!0.88!6.63!HNF1A;;chr6:1312155..1312187,+!p2@FOXQ1!0.88!6.63!FOXQ1;;chr7:73038889..73038905,-!p3@MLXIPL!0.88!6.63!MLXIPL;;chr19:50435673..50435690,+!p8@ATF5!0.88!6.63!ATF5;;chr19:58545454..58545498,+!p1@ZSCAN1!0.88!6.63!ZSCAN1;;chr1:161208013..161208038,-!p1@NR1I3!0.88!6.63!NR1I3;;chr1:214161358..214161377,+!p3@PROX1!0.88!6.63!PROX1;;chr1:47696918..47696935,-!p6@TAL1!0.88!6.63!TAL1;;chr1:92951607..92951661,-!p1@GFI1!0.88!6.63!GFI1;;chr9:137218281..137218340,+!p1@RXRA!0.87!190.81!RXRA;;chr12:52445218..52445237,+!p1@NR4A1!0.87!86.13!NR4A1;;chr13:72441315..72441454,-!p1@DACH1!0.87!13.25!DACH1;;chr6:7108179..7108199,+!p4@RREB1!0.86!13.25!RREB1;;chr11:113930291..113930339,+!p2@ZBTB16!0.86!10.60!ZBTB16;;chr18:6414884..6414942,-!p1@L3MBTL4!0.86!7.95!L3MBTL4;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.90!PPARG;;chr19:13213662..13213686,-!p1@LYL1!0.85!9.28!LYL1;;chr22:38597987..38598021,+!p2@MAFF!0.84!38.43!MAFF;;chr22:46546494..46546525,+!p2@PPARA!0.84!11.93!PPARA;;chr7:113726357..113726443,+!p1@FOXP2!0.84!10.60!FOXP2;;chr2:239148671..239148686,-!p1@HES6!0.83!22.53!HES6;;chrX:131624056..131624069,-!p2@MBNL3!0.83!7.95!MBNL3;;chr18:53068911..53068935,-!p4@TCF4!0.83!6.63!TCF4;;chr20:2673383..2673441,+!p1@EBF4!0.82!9.28!EBF4;;chr14:35872962..35873025,-!p3@NFKBIA!0.81!14.58!NFKBIA;;chr9:94186085..94186096,-!p3@NFIL3!0.81!9.28!NFIL3;;chr19:926001..926046,+!p1@ARID3A!0.80!19.88!ARID3A;;chrX:66763856..66763896,+!p1@AR!0.80!7.95!AR;;chrY:2803415..2803468,+!p1@ZFY!0.80!5.30!ZFY;;chr9:135854074..135854089,+!p2@GFI1B!0.80!5.30!GFI1B;;chrX:131540410..131540438,-!p13@MBNL3!0.80!5.30!MBNL3;;chrX:48645010..48645015,+!p3@GATA1!0.80!5.30!GATA1;;chrX:131623026..131623039,-!p5@MBNL3!0.80!5.30!MBNL3;;chr11:16133375..16133390,-!p19@SOX6!0.80!5.30!SOX6;;chr11:16403910..16403933,-!p12@SOX6!0.80!5.30!SOX6;;chr7:97840743..97840786,+!p1@BHLHA15!0.80!5.30!BHLHA15;;chr8:28244374..28244382,-!p26@ZNF395!0.80!5.30!ZNF395;;chr19:54041574..54041589,+!p6@ZNF331!0.80!5.30!ZNF331;;chr1:40105299..40105326,-!p1@HEYL!0.80!5.30!HEYL;;chr1:42801540..42801562,-!p4@FOXJ3!0.80!5.30!FOXJ3;;chr1:47698007..47698019,-!p13@TAL1!0.80!5.30!TAL1;;chr20:62365987..62365998,+!p8@ZGPAT!0.80!5.30!ZGPAT;;chr17:6926362..6926377,+!p1@BCL6B!0.80!5.30!BCL6B;;chr19:13213634..13213645,-!p8@LYL1!0.80!5.30!LYL1;;chr3:71179746..71179783,-!p7@FOXP1!0.79!18.55!FOXP1;;chr16:86544113..86544145,+!p1@FOXF1!0.79!6.63!FOXF1;;chr2:8822176..8822196,+!p1@ID2!0.78!769.87!ID2;;chr13:41240717..41240735,-!p2@FOXO1!0.78!37.10!FOXO1;;chr10:94449675..94449694,+!p2@HHEX!0.78!14.58!HHEX;;chr5:76383070..76383117,-!p3@ZBED3!0.78!10.60!ZBED3;;chr11:695731..695765,-!p5@DEAF1!0.78!6.63!DEAF1;;chr3:71179699..71179744,-!p2@FOXP1!0.77!39.75!FOXP1;;chr15:96873984..96873999,+!p3@NR2F2!0.77!39.75!NR2F2;;chr17:17726907..17726958,-!p2@SREBF1!0.77!33.13!SREBF1;;chr3:12329397..12329433,+!p2@PPARG!0.77!11.93!PPARG;;chr2:10091815..10091864,+!p1@GRHL1!0.77!6.63!GRHL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.76!13.25!ZFPM2;;chr22:29196433..29196445,-!p4@XBP1!0.76!5.30!XBP1;;chr13:41240737..41240787,-!p1@FOXO1!0.75!60.95!FOXO1;;chr2:10183651..10183713,+!p1@KLF11!0.75!37.10!KLF11;;chr20:42295713..42295738,+!p2@MYBL2!0.75!30.48!MYBL2;;chr19:4067039..4067064,-!p3@ZBTB7A!0.75!14.58!ZBTB7A;;chr4:38665769..38665801,+!p2@KLF3!0.73!43.73!KLF3;;chr19:17356436..17356481,-!p3@NR2F6!0.73!7.95!NR2F6;;chr20:6748325..6748352,+!p1@BMP2!0.73!6.63!BMP2;;chr6:7108210..7108221,+!p7@RREB1!0.73!5.30!RREB1;;chr6:91006575..91006602,-!p2@BACH2!0.72!6.63!BACH2;;chr8:28243813..28243839,-!p4@ZNF395!0.71!7.95!ZNF395;;chr19:56111614..56111634,+!p3@ZNF524!0.71!6.63!ZNF524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| |expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.58!3780.42!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.73!537.98!SEBOX;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.35!221.29!SEBOX;;chr1:27240455..27240474,-!p1@NR0B2!2.14!137.81!NR0B2;;chr19:12998003..12998021,-!p1@KLF1!2.08!120.58!KLF1;;chr19:50432453..50432468,+!p1@ATF5!2.03!5496.39!ATF5;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!107.33!PEG3;;chrX:131547625..131547644,-!p4@MBNL3!1.98!95.40!MBNL3;;chrX:48644984..48645005,+!p1@GATA1!1.95!88.78!GATA1;;chr19:4153613..4153652,+!p1@CREB3L3!1.95!87.45!CREB3L3;;chr6:1312325..1312340,+!p1@FOXQ1!1.90!125.88!FOXQ1;;chr19:33793430..33793447,-!p1@CEBPA!1.89!306.09!CEBPA;;chr1:214161272..214161322,+!p1@PROX1!1.86!98.06!PROX1;;chr7:73038839..73038862,-!p1@MLXIPL!1.86!71.55!MLXIPL;;chrX:131547596..131547609,-!p10@MBNL3!1.82!64.93!MBNL3;;chr19:46367576..46367592,+!p1@FOXA3!1.76!56.98!FOXA3;;chr12:54689532..54689551,-!p4@NFE2!1.70!49.03!NFE2;;chr12:100867627..100867652,+!p1@NR1H4!1.65!43.73!NR1H4;;chr12:100867653..100867677,+!p2@NR1H4!1.61!39.75!NR1H4;;chr19:46800289..46800327,+!p2@HIF3A!1.60!38.43!HIF3A;;chr1:199996733..199996781,+!p1@NR5A2!1.60!38.43!NR5A2;;chr12:54694758..54694805,-!p1@NFE2!1.56!42.40!NFE2;;chr12:54694653..54694672,-!p2@NFE2!1.55!34.45!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!1.50!30.48!GFI1B;;chr1:47695003..47695042,-!p2@TAL1!1.48!29.15!TAL1;;chr12:54694807..54694832,-!p3@NFE2!1.48!29.15!NFE2;;chr20:62680984..62680999,-!p1@SOX18!1.47!37.10!SOX18;;chr3:126076242..126076257,-!p1@KLF15!1.46!34.45!KLF15;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.18!HAND2;;chr19:54041669..54041697,+!p2@ZNF331!1.42!25.18!ZNF331;;chr20:43029862..43029900,+!p1@HNF4A!1.42!25.18!HNF4A;;chr16:85932760..85932775,+!p1@IRF8!1.42!25.18!IRF8;;chr20:50159198..50159299,-!p1@NFATC2!1.41!35.78!NFATC2;;chr15:53082521..53082549,-!p1@ONECUT1!1.40!23.85!ONECUT1;;chr3:126073018..126073036,-!p3@KLF15!1.40!23.85!KLF15;;chr11:47400078..47400106,-!p1@SPI1!1.40!23.85!SPI1;;chr1:201979743..201979762,+!p1@ELF3!1.37!22.53!ELF3;;chr10:94449703..94449718,+!p1@HHEX!1.36!82.15!HHEX;;chr11:16133391..16133439,-!p6@SOX6!1.35!21.20!SOX6;;chr11:47400062..47400077,-!p2@SPI1!1.35!21.20!SPI1;;chr10:51572339..51572376,+!p4@NCOA4!1.29!41.08!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!1.29!19.88!LYL1;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.55!KDM5D;;chr1:201979703..201979721,+!p2@ELF3!1.29!18.55!ELF3;;chr1:47697881..47697910,-!p4@TAL1!1.26!17.23!TAL1;;chr12:54689552..54689574,-!p6@NFE2!1.26!17.23!NFE2;;chr15:61521495..61521506,-!p5@RORA!1.26!17.23!RORA;;chr17:26694979..26695007,-!p4@SEBOX!1.23!15.90!SEBOX;;chr1:199996702..199996732,+!p5@NR5A2!1.23!15.90!NR5A2;;chr16:79634624..79634642,-!p1@MAF!1.21!59.63!MAF;;chr8:71316403..71316427,-!p6@NCOA2!1.19!17.23!NCOA2;;chr19:54058073..54058088,+!p1@ZNF331!1.19!14.58!ZNF331;;chr1:151804244..151804310,-!p1@RORC!1.19!14.58!RORC;;chr14:38064429..38064486,-!p1@FOXA1!1.19!14.58!FOXA1;;chr2:68592406..68592424,+!p1@PLEK!1.19!14.58!PLEK;;chr3:126076264..126076305,-!p2@KLF15!1.18!19.88!KLF15;;chr16:79634595..79634620,-!p2@MAF!1.17!25.18!MAF;;chr11:113930425..113930471,+!p1@ZBTB16!1.17!19.88!ZBTB16;;chr1:23857325..23857416,-!p2@E2F2!1.16!15.90!E2F2;;chrX:48644976..48644983,+!p2@GATA1!1.15!13.25!GATA1;;chr8:76319876..76319926,+!p1@HNF4G!1.15!13.25!HNF4G;;chr11:47279504..47279563,+!p1@NR1H3!1.14!29.15!NR1H3;;chr8:48650715..48650735,-!p1@CEBPD!1.13!1562.26!CEBPD;;chr11:61520075..61520136,+!p1@C11orf9!1.13!26.50!C11orf9;;chr19:46801639..46801699,+!p1@HIF3A!1.11!11.93!HIF3A;;chr20:48808064..48808086,+!p15@CEBPB!1.11!11.93!CEBPB;;chr18:55102628..55102646,+!p2@ONECUT2!1.11!11.93!ONECUT2;;chr15:60884706..60884743,-!p1@RORA!1.09!58.30!RORA;;chr10:51572408..51572454,+!p3@NCOA4!1.08!64.93!NCOA4;;chrX:131623044..131623089,-!p1@MBNL3!1.07!45.05!MBNL3;;chr2:46524897..46524911,+!p2@EPAS1!1.07!30.48!EPAS1;;chr1:23857698..23857733,-!p1@E2F2!1.07!19.88!E2F2;;chr22:29196547..29196563,-!p2@XBP1!1.06!390.90!XBP1;;chr12:54778471..54778528,-!p1@ZNF385A!1.06!10.60!ZNF385A;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.60!TCF21;;chr7:50344289..50344323,+!p1@IKZF1!1.06!10.60!IKZF1;;chr8:11561684..11561751,+!p1@GATA4!1.06!10.60!GATA4;;chr19:46806868..46806883,+!p3@HIF3A!1.06!10.60!HIF3A;;chr19:50922187..50922204,+!p1@SPIB!1.06!10.60!SPIB;;chr20:42984330..42984364,+!p2@HNF4A!1.06!10.60!HNF4A;;chr20:43030002..43030028,+!p3@HNF4A!1.06!10.60!HNF4A;;chr22:29196492..29196503,-!p3@XBP1!1.05!15.90!XBP1;;chr18:19749386..19749404,+!p2@GATA6!1.05!14.58!GATA6;;chr14:35873101..35873119,-!p6@NFKBIA!1.04!13.25!NFKBIA;;chrX:106960285..106960299,-!p1@TSC22D3!1.03!263.69!TSC22D3;;chr18:55102598..55102623,+!p1@ONECUT2!1.01!9.28!ONECUT2;;chr20:48809000..48809053,+!p12@CEBPB!1.00!11.93!CEBPB;;chr5:176738887..176738934,-!p1@MXD3!0.99!59.63!MXD3;;chr19:50435736..50435781,+!p3@ATF5!0.98!11.93!ATF5;;chr8:37963466..37963506,+!p3@ASH2L!0.97!10.60!ASH2L;;chr6:126221034..126221056,+!p13@NCOA7!0.95!7.95!NCOA7;;chr7:73038867..73038878,-!p2@MLXIPL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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854 | |||
|ffid_belonging_in_development=UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10086-102B5 | |id=FF:10086-102B5 | ||
|is_a=EFO:0002091;;FF:0010086 | |is_a=EFO:0002091;;FF:0010086 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11798 | |||
|library_id_phase_based=2:CNhs11798 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10086 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10086 | |||
|name=liver, fetal, pool1 | |name=liver, fetal, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11798,LSID820,release009,COMPLETED | |profile_hcage=CNhs11798,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat: 636643 Lot: 8101369A-6 | |rna_catalog_number=Cat: 636643 Lot: 8101369A-6 | ||
| Line 58: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 101: | ||
|top_motifs=HNF1A:5.67921307299;HNF4A_NR2F1,2:5.0197101017;GATA6:4.29966717159;NR6A1:3.38984442392;TBP:3.10183761925;MTF1:2.84042109213;FOX{F1,F2,J1}:2.70562200009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.5444753983;FOXA2:2.51444929383;STAT2,4,6:2.46593951092;CUX2:1.81594844491;RORA:1.78020715954;AR:1.76588412018;ZNF423:1.37897226424;TFCP2:1.27751408833;FOXM1:1.24721733004;PPARG:1.24601240837;MYOD1:1.15178948239;STAT5{A,B}:1.09221924263;CEBPA,B_DDIT3:1.04377664293;MAZ:1.0123437096;POU6F1:0.981311739123;FOX{D1,D2}:0.967468404109;HIF1A:0.930283269522;GCM1,2:0.869548746571;SP1:0.845237083276;RBPJ:0.829960547658;GFI1:0.764679604783;TLX2:0.763484074389;HIC1:0.715258463662;bHLH_family:0.698730869108;ZNF148:0.695089831959;TFAP4:0.629267380427;MED-1{core}:0.560596812565;GLI1..3:0.555765638126;EVI1:0.542815834476;NFY{A,B,C}:0.537759244692;PAX1,9:0.537653713477;PAX5:0.524184963637;SNAI1..3:0.515576656589;LMO2:0.496148717634;POU2F1..3:0.473661615216;HLF:0.470323442492;XCPE1{core}:0.442474068732;EBF1:0.435287952968;ZEB1:0.414463614976;FOXL1:0.406757691797;FOXP3:0.404845316944;SMAD1..7,9:0.399478434223;RXR{A,B,G}:0.368663511619;NR5A1,2:0.364991369633;T:0.341295262943;DBP:0.340878334103;NR1H4:0.332541091948;LHX3,4:0.324702353542;SOX{8,9,10}:0.286237580523;TAL1_TCF{3,4,12}:0.278258116727;ATF2:0.25745799481;AIRE:0.25646210031;ALX4:0.243882377033;TFAP2{A,C}:0.214169541974;VSX1,2:0.13870147596;TOPORS:0.12730224909;HOX{A5,B5}:0.125891769075;NKX2-1,4:0.111394310138;HES1:0.11054726245;BPTF:0.108795344752;EGR1..3:0.102985315219;HAND1,2:0.101491544743;PATZ1:0.0905206799115;ESRRA:0.0872582650861;ATF6:0.0757324577088;PAX2:0.0700336578913;RXRA_VDR{dimer}:0.067102655638;MYFfamily:0.0665582996659;PBX1:0.050075156599;HMGA1,2:0.0304804079853;SPIB:-0.00662619758473;NKX3-2:-0.00682225960263;E2F1..5:-0.0336086723258;PAX6:-0.0700616707308;NFIL3:-0.0808187798672;SRF:-0.0869181330204;ATF5_CREB3:-0.0910338630412;TLX1..3_NFIC{dimer}:-0.0961585305492;ONECUT1,2:-0.0986907281201;IRF7:-0.114527040728;RREB1:-0.126130559715;NFE2L2:-0.132677793319;NFE2:-0.13429139326;FOX{I1,J2}:-0.149443090757;ATF4:-0.151818114015;MEF2{A,B,C,D}:-0.15798077784;ZIC1..3:-0.160010722402;FOXP1:-0.179228060999;EP300:-0.183461684406;ETS1,2:-0.195408376144;MYB:-0.210106119766;NHLH1,2:-0.217900653712;SPI1:-0.226798919064;HOXA9_MEIS1:-0.232502159235;REST:-0.234275873036;MAFB:-0.235812822923;MTE{core}:-0.241925351561;MYBL2:-0.259842907609;SREBF1,2:-0.265792372184;ADNP_IRX_SIX_ZHX:-0.296509349432;GTF2A1,2:-0.302324075116;CREB1:-0.319107706219;NFKB1_REL_RELA:-0.32408285643;UFEwm:-0.324905176655;IRF1,2:-0.332507312514;TGIF1:-0.336546990232;TFAP2B:-0.36079594344;NFE2L1:-0.369356601987;KLF4:-0.433634918068;JUN:-0.440703414352;BREu{core}:-0.4530937615;TBX4,5:-0.455974321597;SOX5:-0.473552720869;NANOG{mouse}:-0.483681689538;GTF2I:-0.504245356997;POU3F1..4:-0.513371201297;BACH2:-0.513410033463;RUNX1..3:-0.534491655807;IKZF2:-0.552752447267;ELF1,2,4:-0.59282501573;NFIX:-0.600797266441;POU1F1:-0.606624227254;TP53:-0.617888804565;ZNF238:-0.619260737452;ZNF143:-0.644530558189;OCT4_SOX2{dimer}:-0.644813816226;GZF1:-0.647798016095;IKZF1:-0.657556264199;FOS_FOS{B,L1}_JUN{B,D}:-0.67635121757;ARID5B:-0.702452046385;TEAD1:-0.757866142497;CRX:-0.769650152343;PDX1:-0.786800921117;MZF1:-0.793772364653;GFI1B:-0.797252283794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.799451104071;NANOG:-0.802900256399;FOXQ1:-0.80676788913;ZFP161:-0.823083818154;FOSL2:-0.826097924188;AHR_ARNT_ARNT2:-0.828242299671;FOXD3:-0.862977466559;NKX2-3_NKX2-5:-0.883758702385;NFATC1..3:-0.891131074228;SOX17:-0.893644261134;EN1,2:-0.908255574844;FOXO1,3,4:-0.960385340151;ALX1:-1.0014103737;GATA4:-1.00858612215;PAX3,7:-1.04040320989;POU5F1:-1.06448494867;HOX{A4,D4}:-1.07339379187;HMX1:-1.10873410741;HOX{A6,A7,B6,B7}:-1.1189107126;FOXN1:-1.12161539184;LEF1_TCF7_TCF7L1,2:-1.12451447584;NR3C1:-1.13832300423;YY1:-1.15377751563;DMAP1_NCOR{1,2}_SMARC:-1.1898818562;ZBTB16:-1.19937153023;SOX2:-1.20734105598;ESR1:-1.25304955806;ZBTB6:-1.26098040342;NRF1:-1.26838854184;PAX4:-1.29546813621;XBP1:-1.30045896132;SPZ1:-1.33351838421;ZNF384:-1.36578384436;TFDP1:-1.42996860817;RFX1:-1.43301372986;PRRX1,2:-1.45159842225;CDX1,2,4:-1.46066574572;PRDM1:-1.50173205534;HSF1,2:-1.50197045971;STAT1,3:-1.60742252934;NKX3-1:-1.68620676187;RFX2..5_RFXANK_RFXAP:-1.74728195781;TEF:-1.80127956574;PITX1..3:-1.92345139679;CDC5L:-1.99103153716;HBP1_HMGB_SSRP1_UBTF:-2.05657574349;ELK1,4_GABP{A,B1}:-2.16706971621;NKX2-2,8:-2.5140220838;PAX8:-2.63194804562;NKX6-1,2:-2.94760728522 | |top_motifs=HNF1A:5.67921307299;HNF4A_NR2F1,2:5.0197101017;GATA6:4.29966717159;NR6A1:3.38984442392;TBP:3.10183761925;MTF1:2.84042109213;FOX{F1,F2,J1}:2.70562200009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.5444753983;FOXA2:2.51444929383;STAT2,4,6:2.46593951092;CUX2:1.81594844491;RORA:1.78020715954;AR:1.76588412018;ZNF423:1.37897226424;TFCP2:1.27751408833;FOXM1:1.24721733004;PPARG:1.24601240837;MYOD1:1.15178948239;STAT5{A,B}:1.09221924263;CEBPA,B_DDIT3:1.04377664293;MAZ:1.0123437096;POU6F1:0.981311739123;FOX{D1,D2}:0.967468404109;HIF1A:0.930283269522;GCM1,2:0.869548746571;SP1:0.845237083276;RBPJ:0.829960547658;GFI1:0.764679604783;TLX2:0.763484074389;HIC1:0.715258463662;bHLH_family:0.698730869108;ZNF148:0.695089831959;TFAP4:0.629267380427;MED-1{core}:0.560596812565;GLI1..3:0.555765638126;EVI1:0.542815834476;NFY{A,B,C}:0.537759244692;PAX1,9:0.537653713477;PAX5:0.524184963637;SNAI1..3:0.515576656589;LMO2:0.496148717634;POU2F1..3:0.473661615216;HLF:0.470323442492;XCPE1{core}:0.442474068732;EBF1:0.435287952968;ZEB1:0.414463614976;FOXL1:0.406757691797;FOXP3:0.404845316944;SMAD1..7,9:0.399478434223;RXR{A,B,G}:0.368663511619;NR5A1,2:0.364991369633;T:0.341295262943;DBP:0.340878334103;NR1H4:0.332541091948;LHX3,4:0.324702353542;SOX{8,9,10}:0.286237580523;TAL1_TCF{3,4,12}:0.278258116727;ATF2:0.25745799481;AIRE:0.25646210031;ALX4:0.243882377033;TFAP2{A,C}:0.214169541974;VSX1,2:0.13870147596;TOPORS:0.12730224909;HOX{A5,B5}:0.125891769075;NKX2-1,4:0.111394310138;HES1:0.11054726245;BPTF:0.108795344752;EGR1..3:0.102985315219;HAND1,2:0.101491544743;PATZ1:0.0905206799115;ESRRA:0.0872582650861;ATF6:0.0757324577088;PAX2:0.0700336578913;RXRA_VDR{dimer}:0.067102655638;MYFfamily:0.0665582996659;PBX1:0.050075156599;HMGA1,2:0.0304804079853;SPIB:-0.00662619758473;NKX3-2:-0.00682225960263;E2F1..5:-0.0336086723258;PAX6:-0.0700616707308;NFIL3:-0.0808187798672;SRF:-0.0869181330204;ATF5_CREB3:-0.0910338630412;TLX1..3_NFIC{dimer}:-0.0961585305492;ONECUT1,2:-0.0986907281201;IRF7:-0.114527040728;RREB1:-0.126130559715;NFE2L2:-0.132677793319;NFE2:-0.13429139326;FOX{I1,J2}:-0.149443090757;ATF4:-0.151818114015;MEF2{A,B,C,D}:-0.15798077784;ZIC1..3:-0.160010722402;FOXP1:-0.179228060999;EP300:-0.183461684406;ETS1,2:-0.195408376144;MYB:-0.210106119766;NHLH1,2:-0.217900653712;SPI1:-0.226798919064;HOXA9_MEIS1:-0.232502159235;REST:-0.234275873036;MAFB:-0.235812822923;MTE{core}:-0.241925351561;MYBL2:-0.259842907609;SREBF1,2:-0.265792372184;ADNP_IRX_SIX_ZHX:-0.296509349432;GTF2A1,2:-0.302324075116;CREB1:-0.319107706219;NFKB1_REL_RELA:-0.32408285643;UFEwm:-0.324905176655;IRF1,2:-0.332507312514;TGIF1:-0.336546990232;TFAP2B:-0.36079594344;NFE2L1:-0.369356601987;KLF4:-0.433634918068;JUN:-0.440703414352;BREu{core}:-0.4530937615;TBX4,5:-0.455974321597;SOX5:-0.473552720869;NANOG{mouse}:-0.483681689538;GTF2I:-0.504245356997;POU3F1..4:-0.513371201297;BACH2:-0.513410033463;RUNX1..3:-0.534491655807;IKZF2:-0.552752447267;ELF1,2,4:-0.59282501573;NFIX:-0.600797266441;POU1F1:-0.606624227254;TP53:-0.617888804565;ZNF238:-0.619260737452;ZNF143:-0.644530558189;OCT4_SOX2{dimer}:-0.644813816226;GZF1:-0.647798016095;IKZF1:-0.657556264199;FOS_FOS{B,L1}_JUN{B,D}:-0.67635121757;ARID5B:-0.702452046385;TEAD1:-0.757866142497;CRX:-0.769650152343;PDX1:-0.786800921117;MZF1:-0.793772364653;GFI1B:-0.797252283794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.799451104071;NANOG:-0.802900256399;FOXQ1:-0.80676788913;ZFP161:-0.823083818154;FOSL2:-0.826097924188;AHR_ARNT_ARNT2:-0.828242299671;FOXD3:-0.862977466559;NKX2-3_NKX2-5:-0.883758702385;NFATC1..3:-0.891131074228;SOX17:-0.893644261134;EN1,2:-0.908255574844;FOXO1,3,4:-0.960385340151;ALX1:-1.0014103737;GATA4:-1.00858612215;PAX3,7:-1.04040320989;POU5F1:-1.06448494867;HOX{A4,D4}:-1.07339379187;HMX1:-1.10873410741;HOX{A6,A7,B6,B7}:-1.1189107126;FOXN1:-1.12161539184;LEF1_TCF7_TCF7L1,2:-1.12451447584;NR3C1:-1.13832300423;YY1:-1.15377751563;DMAP1_NCOR{1,2}_SMARC:-1.1898818562;ZBTB16:-1.19937153023;SOX2:-1.20734105598;ESR1:-1.25304955806;ZBTB6:-1.26098040342;NRF1:-1.26838854184;PAX4:-1.29546813621;XBP1:-1.30045896132;SPZ1:-1.33351838421;ZNF384:-1.36578384436;TFDP1:-1.42996860817;RFX1:-1.43301372986;PRRX1,2:-1.45159842225;CDX1,2,4:-1.46066574572;PRDM1:-1.50173205534;HSF1,2:-1.50197045971;STAT1,3:-1.60742252934;NKX3-1:-1.68620676187;RFX2..5_RFXANK_RFXAP:-1.74728195781;TEF:-1.80127956574;PITX1..3:-1.92345139679;CDC5L:-1.99103153716;HBP1_HMGB_SSRP1_UBTF:-2.05657574349;ELK1,4_GABP{A,B1}:-2.16706971621;NKX2-2,8:-2.5140220838;PAX8:-2.63194804562;NKX6-1,2:-2.94760728522 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10086-102B5;search_select_hide=table117:FF:10086-102B5 | |||
}} | }} | ||
Latest revision as of 12:21, 3 June 2020
| Name: | liver, fetal, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11798 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11798
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11798
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.464 |
| 10 | 10 | 0.879 |
| 100 | 100 | 0.253 |
| 101 | 101 | 0.372 |
| 102 | 102 | 0.209 |
| 103 | 103 | 0.185 |
| 104 | 104 | 0.153 |
| 105 | 105 | 0.303 |
| 106 | 106 | 0.00347 |
| 107 | 107 | 0.0209 |
| 108 | 108 | 0.606 |
| 109 | 109 | 0.185 |
| 11 | 11 | 0.113 |
| 110 | 110 | 0.686 |
| 111 | 111 | 0.962 |
| 112 | 112 | 0.174 |
| 113 | 113 | 5.36455e-4 |
| 114 | 114 | 0.289 |
| 115 | 115 | 0.628 |
| 116 | 116 | 0.493 |
| 117 | 117 | 0.734 |
| 118 | 118 | 0.401 |
| 119 | 119 | 0.0983 |
| 12 | 12 | 0.789 |
| 120 | 120 | 0.499 |
| 121 | 121 | 0.581 |
| 122 | 122 | 0.959 |
| 123 | 123 | 0.312 |
| 124 | 124 | 0.468 |
| 125 | 125 | 0.497 |
| 126 | 126 | 0.199 |
| 127 | 127 | 0.822 |
| 128 | 128 | 0.101 |
| 129 | 129 | 0.559 |
| 13 | 13 | 0.193 |
| 130 | 130 | 0.0344 |
| 131 | 131 | 0.42 |
| 132 | 132 | 0.265 |
| 133 | 133 | 0.506 |
| 134 | 134 | 0.515 |
| 135 | 135 | 0.892 |
| 136 | 136 | 0.49 |
| 137 | 137 | 0.336 |
| 138 | 138 | 0.995 |
| 139 | 139 | 0.24 |
| 14 | 14 | 0.849 |
| 140 | 140 | 0.704 |
| 141 | 141 | 0.0406 |
| 142 | 142 | 0.231 |
| 143 | 143 | 0.0633 |
| 144 | 144 | 0.459 |
| 145 | 145 | 0.189 |
| 146 | 146 | 0.339 |
| 147 | 147 | 0.413 |
| 148 | 148 | 0.363 |
| 149 | 149 | 0.238 |
| 15 | 15 | 0.632 |
| 150 | 150 | 0.748 |
| 151 | 151 | 0.306 |
| 152 | 152 | 0.0478 |
| 153 | 153 | 0.685 |
| 154 | 154 | 0.364 |
| 155 | 155 | 0.0473 |
| 156 | 156 | 0.9 |
| 157 | 157 | 0.695 |
| 158 | 158 | 0.729 |
| 159 | 159 | 0.969 |
| 16 | 16 | 0.272 |
| 160 | 160 | 0.0134 |
| 161 | 161 | 0.971 |
| 162 | 162 | 0.197 |
| 163 | 163 | 0.437 |
| 164 | 164 | 0.654 |
| 165 | 165 | 0.0628 |
| 166 | 166 | 0.705 |
| 167 | 167 | 0.757 |
| 168 | 168 | 0.388 |
| 169 | 169 | 0.0199 |
| 17 | 17 | 0.355 |
| 18 | 18 | 0.93 |
| 19 | 19 | 0.0126 |
| 2 | 2 | 0.239 |
| 20 | 20 | 0.688 |
| 21 | 21 | 0.255 |
| 22 | 22 | 0.0596 |
| 23 | 23 | 0.114 |
| 24 | 24 | 0.793 |
| 25 | 25 | 0.621 |
| 26 | 26 | 0.307 |
| 27 | 27 | 0.64 |
| 28 | 28 | 0.663 |
| 29 | 29 | 0.712 |
| 3 | 3 | 0.576 |
| 30 | 30 | 0.332 |
| 31 | 31 | 0.303 |
| 32 | 32 | 0.0184 |
| 33 | 33 | 0.56 |
| 34 | 34 | 0.222 |
| 35 | 35 | 0.891 |
| 36 | 36 | 0.359 |
| 37 | 37 | 0.965 |
| 38 | 38 | 0.309 |
| 39 | 39 | 0.278 |
| 4 | 4 | 0.522 |
| 40 | 40 | 0.0064 |
| 41 | 41 | 0.415 |
| 42 | 42 | 0.949 |
| 43 | 43 | 0.152 |
| 44 | 44 | 6.86838e-4 |
| 45 | 45 | 0.0976 |
| 46 | 46 | 0.183 |
| 47 | 47 | 0.544 |
| 48 | 48 | 0.283 |
| 49 | 49 | 0.134 |
| 5 | 5 | 0.575 |
| 50 | 50 | 0.504 |
| 51 | 51 | 0.635 |
| 52 | 52 | 0.0436 |
| 53 | 53 | 0.794 |
| 54 | 54 | 0.402 |
| 55 | 55 | 0.519 |
| 56 | 56 | 0.462 |
| 57 | 57 | 0.81 |
| 58 | 58 | 0.43 |
| 59 | 59 | 0.0463 |
| 6 | 6 | 0.663 |
| 60 | 60 | 0.0203 |
| 61 | 61 | 0.631 |
| 62 | 62 | 0.315 |
| 63 | 63 | 0.479 |
| 64 | 64 | 0.27 |
| 65 | 65 | 0.102 |
| 66 | 66 | 0.605 |
| 67 | 67 | 0.222 |
| 68 | 68 | 0.767 |
| 69 | 69 | 0.155 |
| 7 | 7 | 0.0278 |
| 70 | 70 | 0.0553 |
| 71 | 71 | 0.291 |
| 72 | 72 | 0.668 |
| 73 | 73 | 0.0838 |
| 74 | 74 | 0.163 |
| 75 | 75 | 0.486 |
| 76 | 76 | 0.549 |
| 77 | 77 | 0.0496 |
| 78 | 78 | 0.078 |
| 79 | 79 | 0.957 |
| 8 | 8 | 0.224 |
| 80 | 80 | 0.784 |
| 81 | 81 | 0.978 |
| 82 | 82 | 0.657 |
| 83 | 83 | 0.759 |
| 84 | 84 | 0.276 |
| 85 | 85 | 0.232 |
| 86 | 86 | 0.848 |
| 87 | 87 | 0.656 |
| 88 | 88 | 0.584 |
| 89 | 89 | 0.287 |
| 9 | 9 | 0.479 |
| 90 | 90 | 0.745 |
| 91 | 91 | 0.278 |
| 92 | 92 | 0.214 |
| 93 | 93 | 0.528 |
| 94 | 94 | 0.302 |
| 95 | 95 | 0.557 |
| 96 | 96 | 0.149 |
| 97 | 97 | 0.475 |
| 98 | 98 | 0.736 |
| 99 | 99 | 0.139 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11798
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010086 human liver - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002107 (liver)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010086 (human liver - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
