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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005937
|accession_numbers=CAGE;DRX008758;DRR009630;DRZ001055;DRZ002440;DRZ012405;DRZ013790
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000996,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000996,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.97!92.54!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.90!77.89!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.83!94.54!ZBTB16;;chr6:1312325..1312340,+!p1@FOXQ1!1.81!101.20!FOXQ1;;chr20:62680984..62680999,-!p1@SOX18!1.77!76.56!SOX18;;chr7:44143925..44143970,+!p1@AEBP1!1.76!1173.73!AEBP1;;chr16:86544113..86544145,+!p1@FOXF1!1.75!67.24!FOXF1;;chr15:42749722..42749739,-!p2@ZFP106!1.68!81.89!ZFP106;;chr11:34642612..34642646,+!p1@EHF!1.67!45.27!EHF;;chr7:44143978..44143989,+!p2@AEBP1!1.64!75.90!AEBP1;;chr7:35293685..35293718,-!p1@TBX20!1.61!39.28!TBX20;;chr3:126076242..126076257,-!p1@KLF15!1.59!46.60!KLF15;;chr1:201979743..201979762,+!p1@ELF3!1.59!37.95!ELF3;;chr11:113930401..113930422,+!p3@ZBTB16!1.58!37.28!ZBTB16;;chr21:39870339..39870443,-!p1@ERG!1.54!33.95!ERG;;chr22:38380543..38380569,-!p1@SOX10!1.53!32.62!SOX10;;chr1:201979703..201979721,+!p2@ELF3!1.52!31.96!ELF3;;chr5:134369879..134369898,-!p2@PITX1!1.49!29.96!PITX1;;chr7:27192185..27192209,-!p1@HOXA3!1.49!29.96!HOXA3;;chr7:44143997..44144008,+!p3@AEBP1!1.48!37.28!AEBP1;;chr12:52445218..52445237,+!p1@NR4A1!1.44!319.56!NR4A1;;chr12:52437488..52437507,+!p2@NR4A1!1.44!26.63!NR4A1;;chr10:8096631..8096660,+!p1@GATA3!1.43!31.29!GATA3;;chr3:169381420..169381535,-!p1@MECOM!1.43!29.96!MECOM;;chr17:6926362..6926377,+!p1@BCL6B!1.43!25.96!BCL6B;;chr1:40105299..40105326,-!p1@HEYL!1.42!25.30!HEYL;;chr11:47400078..47400106,-!p1@SPI1!1.41!24.63!SPI1;;chr11:113930291..113930339,+!p2@ZBTB16!1.40!38.61!ZBTB16;;chr20:51588873..51588953,+!p1@TSHZ2!1.39!30.62!TSHZ2;;chr13:72441315..72441454,-!p1@DACH1!1.37!43.94!DACH1;;chr4:174451370..174451387,-!p1@HAND2!1.37!22.64!HAND2;;chr5:71803177..71803255,-!p1@ZNF366!1.37!22.64!ZNF366;;chr8:10588010..10588030,-!p1@SOX7!1.37!22.64!SOX7;;chr9:77112244..77112262,+!p1@RORB!1.35!23.97!RORB;;chr7:44143738..44143760,+!p4@AEBP1!1.33!23.30!AEBP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.31!19.31!ZBED1;;chr3:128212033..128212051,-!p1@GATA2!1.29!18.64!GATA2;;chr10:131762504..131762555,-!p1@EBF3!1.28!17.98!EBF3;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.31!HOXB6;;chr2:19558373..19558392,-!p1@OSR1!1.25!45.94!OSR1;;chr1:61548069..61548102,+!p3@NFIA!1.25!40.61!NFIA;;chr7:15726243..15726293,-!p2@MEOX2!1.25!16.64!MEOX2;;chr7:113726357..113726443,+!p1@FOXP2!1.24!27.96!FOXP2;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.98!IRF6;;chr4:174450089..174450153,-!p2@HAND2!1.23!15.98!HAND2;;chrX:106960285..106960299,-!p1@TSC22D3!1.22!411.44!TSC22D3;;chr7:63505799..63505904,+!p1@ZNF727!1.21!15.31!ZNF727;;chr8:48650715..48650735,-!p1@CEBPD!1.20!1832.16!CEBPD;;chr3:126076264..126076305,-!p2@KLF15!1.20!20.64!KLF15;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.19!14.65!PEG3;;chr2:177001290..177001315,+!p1@HOXD3!1.18!13.98!HOXD3;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.63!TBX18;;chr14:38064429..38064486,-!p1@FOXA1!1.16!13.32!FOXA1;;chr12:26277956..26277980,-!p1@BHLHE41!1.15!46.60!BHLHE41;;chr5:134369905..134369972,-!p1@PITX1!1.15!19.97!PITX1;;chr8:106330656..106330684,+!p1@ZFPM2!1.14!33.29!ZFPM2;;chr1:214161272..214161322,+!p1@PROX1!1.14!17.98!PROX1;;chr12:115122318..115122331,-!p2@TBX3!1.14!12.65!TBX3;;chr7:15726296..15726315,-!p1@MEOX2!1.14!12.65!MEOX2;;chr1:61548225..61548299,+!p1@NFIA!1.13!161.11!NFIA;;chrX:66763856..66763896,+!p1@AR!1.13!17.98!AR;;chr3:12330560..12330579,+!p1@PPARG!1.12!13.98!PPARG;;chr9:114287433..114287513,+!p1@ZNF483!1.11!31.29!ZNF483;;chr11:34642656..34642667,+!p2@EHF!1.11!11.98!EHF;;chr15:96873984..96873999,+!p3@NR2F2!1.10!84.55!NR2F2;;chr17:7492684..7492778,-!p2@SOX15!1.10!24.63!SOX15;;chr20:2673383..2673441,+!p1@EBF4!1.10!18.64!EBF4;;chr11:12696579..12696611,+!p4@TEAD1!1.09!11.32!TEAD1;;chr5:122424918..122424944,+!p1@PRDM6!1.09!11.32!PRDM6;;chr12:115122005..115122016,-!p3@TBX3!1.08!13.32!TBX3;;chr1:61548374..61548415,+!p4@NFIA!1.07!19.97!NFIA;;chr12:115121802..115121814,-!p5@TBX3!1.07!10.65!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!1.07!10.65!HOXD8;;chr9:94186101..94186122,-!p1@NFIL3!1.06!146.47!NFIL3;;chr1:61547894..61547968,+!p2@NFIA!1.06!30.62!NFIA;;chr3:24536253..24536328,-!p1@THRB!1.06!19.97!THRB;;chr12:80085061..80085119,-!p6@PAWR!1.06!16.64!PAWR;;chr2:85980919..85980942,+!p4@ATOH8!1.06!11.32!ATOH8;;chr4:4861385..4861398,+!p1@MSX1!1.05!30.62!MSX1;;chr17:59477197..59477212,+!p2@TBX2!1.05!17.98!TBX2;;chrX:107019163..107019179,-!p7@TSC22D3!1.05!11.98!TSC22D3;;chr2:145275162..145275202,-!p2@ZEB2!1.04!59.92!ZEB2;;chr18:19749541..19749557,+!p1@GATA6!1.04!31.96!GATA6;;chrX:107018969..107019024,-!p6@TSC22D3!1.04!13.98!TSC22D3;;chr18:53068911..53068935,-!p4@TCF4!1.04!11.32!TCF4;;chr3:21792682..21792720,-!p1@ZNF385D!1.04!9.99!ZNF385D;;chr9:124991204..124991246,-!p1@LHX6!1.04!9.99!LHX6;;chr2:145277882..145277967,-!p3@ZEB2!1.02!16.64!ZEB2;;chr12:54785074..54785122,-!p2@ZNF385A!1.02!14.65!ZNF385A;;chr2:85980951..85981004,+!p1@ATOH8!1.01!15.31!ATOH8;;chr8:106330696..106330719,+!p2@ZFPM2!1.01!11.98!ZFPM2;;chr17:53342311..53342400,+!p1@HLF!1.01!10.65!HLF;;chr17:46690839..466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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003975;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/vagina%252c%2520adult.CNhs12854.10204-103F6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/vagina%252c%2520adult.CNhs12854.10204-103F6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/vagina%252c%2520adult.CNhs12854.10204-103F6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/vagina%252c%2520adult.CNhs12854.10204-103F6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/vagina%252c%2520adult.CNhs12854.10204-103F6.hg38.nobarcode.ctss.bed.gz
|id=FF:10204-103F6
|id=FF:10204-103F6
|is_a=EFO:0002091;;FF:0010204
|is_a=EFO:0002091;;FF:0010204
|is_obsolete=
|is_obsolete=
|library_id=CNhs12854
|library_id_phase_based=2:CNhs12854
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10204
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10204
|name=vagina, adult
|name=vagina, adult
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12854,LSID973,release012,COMPLETED
|profile_hcage=CNhs12854,LSID973,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 61: Line 78:
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Line 77: Line 95:
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|sample_strain=
Line 83: Line 101:
|top_motifs=HSF1,2:4.05982555738;PATZ1:2.29318610147;STAT2,4,6:2.16593715185;MAZ:2.09974953038;FOXO1,3,4:2.07796574052;AR:2.07270231215;NFATC1..3:2.05641212291;FOX{D1,D2}:1.96142465634;TFAP2{A,C}:1.85543115899;SP1:1.85382420139;TFAP2B:1.76389424854;MED-1{core}:1.74833484868;MZF1:1.72410784324;FOX{I1,J2}:1.68991146003;HIC1:1.54568804234;MTE{core}:1.53303707476;SRF:1.52406118909;TLX1..3_NFIC{dimer}:1.46588314336;TFCP2:1.44377209223;GTF2I:1.44304700303;EGR1..3:1.38106034521;EP300:1.32662357505;MTF1:1.31256725619;STAT1,3:1.30871408811;IKZF1:1.28981557622;PAX1,9:1.24391950452;HMX1:1.24124906974;TBP:1.23071940557;TFAP4:1.22867041916;ZNF238:1.17095013198;SOX5:1.11523108393;RBPJ:1.07280877352;HBP1_HMGB_SSRP1_UBTF:0.989617690522;VSX1,2:0.988952490728;SPZ1:0.982591714285;PAX6:0.967305091537;XCPE1{core}:0.963968320769;PRDM1:0.956644843172;RREB1:0.945809258678;ATF6:0.933815867864;GFI1B:0.905179199577;TEAD1:0.863466260468;MYFfamily:0.854525716994;NR3C1:0.850117975314;TGIF1:0.844365351568;TLX2:0.843360844501;ZNF148:0.768576841223;TBX4,5:0.755179726103;IRF7:0.737449563697;POU6F1:0.718223919841;BREu{core}:0.698945424001;GTF2A1,2:0.678473597116;MEF2{A,B,C,D}:0.625784264927;NANOG:0.618882518016;GATA6:0.618427973329;ATF2:0.612807979779;ZFP161:0.56798751033;PDX1:0.567352229656;NKX2-1,4:0.546056736706;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.534138169911;PAX5:0.454251918655;SREBF1,2:0.4396013084;MYBL2:0.431255564106;NR1H4:0.418865453019;SMAD1..7,9:0.407298439823;FOXQ1:0.403625613643;HAND1,2:0.386416799879;HNF1A:0.385997689694;SOX2:0.357836496857;TEF:0.354522860053;CDX1,2,4:0.343077605459;HOX{A6,A7,B6,B7}:0.335478253571;ATF4:0.335262323667;NHLH1,2:0.324853134058;MAFB:0.323561950203;REST:0.30355636155;ETS1,2:0.297318520548;IKZF2:0.289209944201;ZIC1..3:0.283340498191;FOXP3:0.264175324379;ZNF423:0.254268046882;ZEB1:0.213388831709;CUX2:0.211744990434;GLI1..3:0.210577951078;FOXM1:0.202851774304;SPIB:0.200066144188;JUN:0.198141816291;PRRX1,2:0.146154947266;ESRRA:0.142650732512;NFE2L2:0.141416159817;FOXN1:0.140404805805;SNAI1..3:0.12451289129;CEBPA,B_DDIT3:0.106152223985;POU1F1:0.105188201083;CDC5L:0.0978987392612;FOXA2:0.0961700952029;ZNF143:0.0708208670302;XBP1:0.0698048865272;SPI1:0.0627765642021;FOX{F1,F2,J1}:0.0486938967078;ATF5_CREB3:0.0430340329703;RORA:0.0237391439581;GATA4:0.0113685560121;HNF4A_NR2F1,2:0.00822993741218;EBF1:0.006221446614;AHR_ARNT_ARNT2:-0.044125952876;IRF1,2:-0.0686378769614;HES1:-0.0727336830657;BPTF:-0.0731282556335;NFIX:-0.0839065363428;POU5F1:-0.11226446496;HLF:-0.124846147681;HIF1A:-0.126122706012;LHX3,4:-0.138419502659;KLF4:-0.154013491602;RFX2..5_RFXANK_RFXAP:-0.157281780328;NR5A1,2:-0.177679869424;ELF1,2,4:-0.183147062667;TP53:-0.184509663773;FOXL1:-0.185334728326;bHLH_family:-0.20066629004;NFE2:-0.204636010774;SOX{8,9,10}:-0.214187744768;FOSL2:-0.226340648461;PBX1:-0.233799122271;POU3F1..4:-0.235813502552;NANOG{mouse}:-0.247441472348;TFDP1:-0.248479635166;SOX17:-0.254861917622;NKX2-2,8:-0.256027550021;NKX6-1,2:-0.258709420117;RXRA_VDR{dimer}:-0.258791820987;EN1,2:-0.26423422547;HOXA9_MEIS1:-0.271399149978;GZF1:-0.280006262388;AIRE:-0.280627773143;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.304990789133;NKX2-3_NKX2-5:-0.317059415607;MYOD1:-0.329772836595;FOS_FOS{B,L1}_JUN{B,D}:-0.338341042566;DBP:-0.342494518902;LMO2:-0.346304005826;BACH2:-0.351057584051;NFIL3:-0.356972800903;T:-0.400734604279;ESR1:-0.401272490591;CREB1:-0.403171485966;ZBTB6:-0.406535668692;NRF1:-0.408213420568;NFKB1_REL_RELA:-0.431676555411;PITX1..3:-0.449927320732;STAT5{A,B}:-0.492758364431;EVI1:-0.512522346031;NKX3-2:-0.515007407368;ZNF384:-0.527231911146;RUNX1..3:-0.529005965926;RXR{A,B,G}:-0.543240261736;ADNP_IRX_SIX_ZHX:-0.555043299545;ARID5B:-0.572296404926;FOXP1:-0.583147756979;UFEwm:-0.618704390645;GFI1:-0.637582160766;PAX3,7:-0.645152287784;RFX1:-0.649120378783;PAX2:-0.681096431159;FOXD3:-0.716869519111;PPARG:-0.71981410813;NR6A1:-0.749325046954;ALX1:-0.769550992452;NFY{A,B,C}:-0.782619698926;TOPORS:-0.782928161396;GCM1,2:-0.810408044566;ALX4:-0.835004379312;ZBTB16:-0.893808801129;HOX{A4,D4}:-0.89544809174;LEF1_TCF7_TCF7L1,2:-0.954866410962;DMAP1_NCOR{1,2}_SMARC:-0.957384292064;HMGA1,2:-0.961407471924;NFE2L1:-0.985536939899;E2F1..5:-1.02426005567;TAL1_TCF{3,4,12}:-1.02597158306;CRX:-1.04795390427;POU2F1..3:-1.10881568622;MYB:-1.17080997855;HOX{A5,B5}:-1.20799032201;OCT4_SOX2{dimer}:-1.26681730532;NKX3-1:-1.2742030585;ONECUT1,2:-1.44126721947;ELK1,4_GABP{A,B1}:-1.55955745082;YY1:-1.83209737797;PAX8:-2.24604658884;PAX4:-2.61414279245
|top_motifs=HSF1,2:4.05982555738;PATZ1:2.29318610147;STAT2,4,6:2.16593715185;MAZ:2.09974953038;FOXO1,3,4:2.07796574052;AR:2.07270231215;NFATC1..3:2.05641212291;FOX{D1,D2}:1.96142465634;TFAP2{A,C}:1.85543115899;SP1:1.85382420139;TFAP2B:1.76389424854;MED-1{core}:1.74833484868;MZF1:1.72410784324;FOX{I1,J2}:1.68991146003;HIC1:1.54568804234;MTE{core}:1.53303707476;SRF:1.52406118909;TLX1..3_NFIC{dimer}:1.46588314336;TFCP2:1.44377209223;GTF2I:1.44304700303;EGR1..3:1.38106034521;EP300:1.32662357505;MTF1:1.31256725619;STAT1,3:1.30871408811;IKZF1:1.28981557622;PAX1,9:1.24391950452;HMX1:1.24124906974;TBP:1.23071940557;TFAP4:1.22867041916;ZNF238:1.17095013198;SOX5:1.11523108393;RBPJ:1.07280877352;HBP1_HMGB_SSRP1_UBTF:0.989617690522;VSX1,2:0.988952490728;SPZ1:0.982591714285;PAX6:0.967305091537;XCPE1{core}:0.963968320769;PRDM1:0.956644843172;RREB1:0.945809258678;ATF6:0.933815867864;GFI1B:0.905179199577;TEAD1:0.863466260468;MYFfamily:0.854525716994;NR3C1:0.850117975314;TGIF1:0.844365351568;TLX2:0.843360844501;ZNF148:0.768576841223;TBX4,5:0.755179726103;IRF7:0.737449563697;POU6F1:0.718223919841;BREu{core}:0.698945424001;GTF2A1,2:0.678473597116;MEF2{A,B,C,D}:0.625784264927;NANOG:0.618882518016;GATA6:0.618427973329;ATF2:0.612807979779;ZFP161:0.56798751033;PDX1:0.567352229656;NKX2-1,4:0.546056736706;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.534138169911;PAX5:0.454251918655;SREBF1,2:0.4396013084;MYBL2:0.431255564106;NR1H4:0.418865453019;SMAD1..7,9:0.407298439823;FOXQ1:0.403625613643;HAND1,2:0.386416799879;HNF1A:0.385997689694;SOX2:0.357836496857;TEF:0.354522860053;CDX1,2,4:0.343077605459;HOX{A6,A7,B6,B7}:0.335478253571;ATF4:0.335262323667;NHLH1,2:0.324853134058;MAFB:0.323561950203;REST:0.30355636155;ETS1,2:0.297318520548;IKZF2:0.289209944201;ZIC1..3:0.283340498191;FOXP3:0.264175324379;ZNF423:0.254268046882;ZEB1:0.213388831709;CUX2:0.211744990434;GLI1..3:0.210577951078;FOXM1:0.202851774304;SPIB:0.200066144188;JUN:0.198141816291;PRRX1,2:0.146154947266;ESRRA:0.142650732512;NFE2L2:0.141416159817;FOXN1:0.140404805805;SNAI1..3:0.12451289129;CEBPA,B_DDIT3:0.106152223985;POU1F1:0.105188201083;CDC5L:0.0978987392612;FOXA2:0.0961700952029;ZNF143:0.0708208670302;XBP1:0.0698048865272;SPI1:0.0627765642021;FOX{F1,F2,J1}:0.0486938967078;ATF5_CREB3:0.0430340329703;RORA:0.0237391439581;GATA4:0.0113685560121;HNF4A_NR2F1,2:0.00822993741218;EBF1:0.006221446614;AHR_ARNT_ARNT2:-0.044125952876;IRF1,2:-0.0686378769614;HES1:-0.0727336830657;BPTF:-0.0731282556335;NFIX:-0.0839065363428;POU5F1:-0.11226446496;HLF:-0.124846147681;HIF1A:-0.126122706012;LHX3,4:-0.138419502659;KLF4:-0.154013491602;RFX2..5_RFXANK_RFXAP:-0.157281780328;NR5A1,2:-0.177679869424;ELF1,2,4:-0.183147062667;TP53:-0.184509663773;FOXL1:-0.185334728326;bHLH_family:-0.20066629004;NFE2:-0.204636010774;SOX{8,9,10}:-0.214187744768;FOSL2:-0.226340648461;PBX1:-0.233799122271;POU3F1..4:-0.235813502552;NANOG{mouse}:-0.247441472348;TFDP1:-0.248479635166;SOX17:-0.254861917622;NKX2-2,8:-0.256027550021;NKX6-1,2:-0.258709420117;RXRA_VDR{dimer}:-0.258791820987;EN1,2:-0.26423422547;HOXA9_MEIS1:-0.271399149978;GZF1:-0.280006262388;AIRE:-0.280627773143;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.304990789133;NKX2-3_NKX2-5:-0.317059415607;MYOD1:-0.329772836595;FOS_FOS{B,L1}_JUN{B,D}:-0.338341042566;DBP:-0.342494518902;LMO2:-0.346304005826;BACH2:-0.351057584051;NFIL3:-0.356972800903;T:-0.400734604279;ESR1:-0.401272490591;CREB1:-0.403171485966;ZBTB6:-0.406535668692;NRF1:-0.408213420568;NFKB1_REL_RELA:-0.431676555411;PITX1..3:-0.449927320732;STAT5{A,B}:-0.492758364431;EVI1:-0.512522346031;NKX3-2:-0.515007407368;ZNF384:-0.527231911146;RUNX1..3:-0.529005965926;RXR{A,B,G}:-0.543240261736;ADNP_IRX_SIX_ZHX:-0.555043299545;ARID5B:-0.572296404926;FOXP1:-0.583147756979;UFEwm:-0.618704390645;GFI1:-0.637582160766;PAX3,7:-0.645152287784;RFX1:-0.649120378783;PAX2:-0.681096431159;FOXD3:-0.716869519111;PPARG:-0.71981410813;NR6A1:-0.749325046954;ALX1:-0.769550992452;NFY{A,B,C}:-0.782619698926;TOPORS:-0.782928161396;GCM1,2:-0.810408044566;ALX4:-0.835004379312;ZBTB16:-0.893808801129;HOX{A4,D4}:-0.89544809174;LEF1_TCF7_TCF7L1,2:-0.954866410962;DMAP1_NCOR{1,2}_SMARC:-0.957384292064;HMGA1,2:-0.961407471924;NFE2L1:-0.985536939899;E2F1..5:-1.02426005567;TAL1_TCF{3,4,12}:-1.02597158306;CRX:-1.04795390427;POU2F1..3:-1.10881568622;MYB:-1.17080997855;HOX{A5,B5}:-1.20799032201;OCT4_SOX2{dimer}:-1.26681730532;NKX3-1:-1.2742030585;ONECUT1,2:-1.44126721947;ELK1,4_GABP{A,B1}:-1.55955745082;YY1:-1.83209737797;PAX8:-2.24604658884;PAX4:-2.61414279245
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10204-103F6;search_select_hide=table117:FF:10204-103F6
}}
}}

Latest revision as of 13:56, 3 June 2020

Name:vagina, adult
Species:Human (Homo sapiens)
Library ID:CNhs12854
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexF
age68
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberR1234283-10
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005937
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12854 CAGE DRX008758 DRR009630
Accession ID Hg19

Library idBAMCTSS
CNhs12854 DRZ001055 DRZ002440
Accession ID Hg38

Library idBAMCTSS
CNhs12854 DRZ012405 DRZ013790
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.41
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.435
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0677
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.28
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.139
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.222
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.42
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.614
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.948
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.261
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.174
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.222
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.658
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.222
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.222
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.368
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0128
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12854

Jaspar motifP-value
MA0002.20.00903
MA0003.10.702
MA0004.10.365
MA0006.10.557
MA0007.10.689
MA0009.10.119
MA0014.10.36
MA0017.10.153
MA0018.20.834
MA0019.10.122
MA0024.10.0411
MA0025.10.573
MA0027.10.817
MA0028.16.80957e-4
MA0029.10.539
MA0030.19.79043e-7
MA0031.10.00136
MA0035.20.202
MA0038.10.611
MA0039.20.743
MA0040.10.0951
MA0041.10.0581
MA0042.10.124
MA0043.10.713
MA0046.10.0133
MA0047.20.0141
MA0048.10.246
MA0050.10.82
MA0051.10.79
MA0052.10.015
MA0055.10.0719
MA0057.10.927
MA0058.10.259
MA0059.10.00676
MA0060.10.255
MA0061.10.0221
MA0062.21.129e-5
MA0065.20.00858
MA0066.10.00906
MA0067.10.501
MA0068.17.33932e-6
MA0069.10.891
MA0070.10.655
MA0071.10.0799
MA0072.10.545
MA0073.10.87
MA0074.10.482
MA0076.17.08353e-5
MA0077.10.558
MA0078.10.381
MA0079.20.28
MA0080.20.602
MA0081.10.423
MA0083.10.00218
MA0084.10.883
MA0087.10.17
MA0088.10.0863
MA0090.10.0218
MA0091.10.882
MA0092.10.773
MA0093.10.367
MA0099.24.95215e-4
MA0100.10.093
MA0101.10.239
MA0102.20.0114
MA0103.10.136
MA0104.20.0116
MA0105.12.8229e-6
MA0106.10.105
MA0107.10.315
MA0108.23.08198e-11
MA0111.10.512
MA0112.20.00588
MA0113.10.137
MA0114.10.0523
MA0115.10.0374
MA0116.13.19712e-5
MA0117.10.478
MA0119.10.687
MA0122.10.6
MA0124.10.489
MA0125.10.387
MA0131.10.464
MA0135.10.0194
MA0136.10.0284
MA0137.23.76052e-6
MA0138.20.542
MA0139.10.151
MA0140.10.518
MA0141.10.01
MA0142.10.0696
MA0143.10.546
MA0144.10.0263
MA0145.10.338
MA0146.10.22
MA0147.10.0025
MA0148.10.0183
MA0149.10.0432
MA0150.10.156
MA0152.10.473
MA0153.10.0488
MA0154.10.0791
MA0155.10.907
MA0156.10.0141
MA0157.10.177
MA0159.10.144
MA0160.10.112
MA0162.10.446
MA0163.13.26858e-11
MA0164.10.587
MA0258.10.0152
MA0259.10.122



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12854

Novel motifP-value
10.0158
100.0517
1000.116
1010.366
1020.303
1030.0917
1040.416
1050.806
1060.453
1070.735
1080.991
1090.0156
110.0179
1100.176
1110.00727
1120.384
1130.5
1140.0189
1150.523
1160.313
1170.0165
1180.111
1190.639
120.818
1200.246
1210.659
1220.616
1230.0533
1240.723
1250.021
1260.827
1270.641
1280.677
1290.326
130.0467
1300.433
1310.182
1320.401
1330.534
1340.51
1350.758
1360.527
1370.522
1380.551
1390.382
140.781
1400.413
1410.237
1420.584
1430.0497
1440.689
1450.337
1460.542
1470.568
1480.0495
1490.469
150.0429
1500.491
1510.72
1520.696
1530.959
1540.534
1550.366
1560.485
1570.677
1580.609
1590.499
160.0502
1600.394
1610.202
1620.382
1630.735
1640.0359
1650.732
1660.913
1670.0284
1680.878
1690.0979
170.498
180.109
190.963
20.432
200.285
210.279
220.967
230.395
240.832
250.316
260.0123
270.664
280.776
290.00469
30.11
300.105
310.737
320.0544
330.142
340.373
350.152
360.0189
370.0919
380.649
390.496
40.235
400.0659
410.34
420.272
430.225
440.0425
450.385
460.024
470.0242
480.0804
490.0705
50.4
500.758
510.408
520.411
530.745
540.996
550.923
560.805
570.167
580.571
590.841
60.672
600.997
610.129
620.365
630.495
640.0765
650.6
660.1
670.723
680.453
690.183
70.227
700.0544
710.0156
720.736
730.218
740.558
750.0265
760.139
770.787
780.0588
790.13
80.0435
800.884
810.234
820.184
830.901
840.827
850.782
860.751
870.0671
880.884
890.22
90.566
900.0813
910.884
920.928
930.0247
940.0776
950.00478
960.288
970.801
980.0753
990.732



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12854


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000996 (vagina)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010204 (human vagina - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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