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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005854
|accession_numbers=CAGE;DRX007874;DRR008746;DRZ000171;DRZ001556;DRZ011521;DRZ012906
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!1.89!88.22!PPARG;;chr2:172967621..172967637,-!p1@DLX2!1.55!89.16!DLX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.46!35.16!TFAP2C;;chr6:126240380..126240430,+!p2@NCOA7!1.42!64.04!NCOA7;;chr15:67418119..67418162,+!p5@SMAD3!1.34!22.92!SMAD3;;chr20:42543441..42543497,+!p1@TOX2!1.33!88.53!TOX2;;chr12:66218598..66218645,+!p2@HMGA2!1.29!83.82!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!1.28!43.01!TOX2;;chr6:126240442..126240459,+!p4@NCOA7!1.26!21.66!NCOA7;;chr16:86600426..86600441,+!p1@FOXC2!1.23!38.93!FOXC2;;chr1:25256756..25256774,-!p1@RUNX3!1.22!28.88!RUNX3;;chr2:176969228..176969260,+!p1@HOXD11!1.22!15.70!HOXD11;;chr11:65667884..65667895,-!p2@FOSL1!1.21!58.08!FOSL1;;chr12:66218836..66218888,+!p1@HMGA2!1.20!135.62!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!1.19!23.86!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.18!14.13!TFAP2A;;chr10:8096631..8096660,+!p1@GATA3!1.10!14.13!GATA3;;chr15:67391010..67391046,+!p13@SMAD3!1.10!11.62!SMAD3;;chr15:67418177..67418204,+!p9@SMAD3!1.10!11.62!SMAD3;;chr6:34204921..34204939,+!p3@HMGA1!1.09!340.62!HMGA1;;chr9:110252035..110252057,-!p1@KLF4!1.09!180.83!KLF4;;chr12:66218003..66218018,+!p9@HMGA2!1.09!13.81!HMGA2;;chr6:126240463..126240489,+!p6@NCOA7!1.09!12.87!NCOA7;;chr12:19592405..19592492,+!p2@AEBP2!1.08!95.75!AEBP2;;chr8:67525443..67525459,-!p2@MYBL1!1.07!16.01!MYBL1;;chr2:45168997..45169020,+!p4@SIX3!1.07!10.67!SIX3;;chr11:65667846..65667868,-!p1@FOSL1!1.06!280.97!FOSL1;;chr6:126102292..126102329,+!p3@NCOA7!1.06!35.16!NCOA7;;chr10:8096772..8096787,+!p2@GATA3!1.06!12.56!GATA3;;chr12:66218573..66218596,+!p7@HMGA2!1.05!15.38!HMGA2;;chr12:27485785..27485816,+!p1@ARNTL2!1.04!70.63!ARNTL2;;chr15:67418047..67418093,+!p4@SMAD3!1.03!12.24!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!1.03!9.73!FOXL1;;chr17:70117153..70117174,+!p1@SOX9!1.02!98.26!SOX9;;chr7:26191809..26191890,+!p1@NFE2L3!1.01!46.46!NFE2L3;;chr5:174151553..174151610,+!p1@MSX2!1.01!15.38!MSX2;;chr11:65686802..65686818,+!p6@DRAP1!1.00!16.01!DRAP1;;chr3:12329358..12329393,+!p3@PPARG!0.98!21.35!PPARG;;chr6:126240356..126240379,+!p7@NCOA7!0.98!10.67!NCOA7;;chr2:172950227..172950249,+!p2@DLX1!0.96!8.16!DLX1;;chr21:38071430..38071456,+!p1@SIM2!0.95!7.85!SIM2;;chr12:19592493..19592524,+!p3@AEBP2!0.93!21.03!AEBP2;;chr2:176969179..176969226,+!p2@HOXD11!0.93!7.53!HOXD11;;chr7:27153454..27153469,-!p2@HOXA3!0.93!7.53!HOXA3;;chr21:38071403..38071428,+!p2@SIM2!0.93!7.53!SIM2;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.48!TFAP2A;;chr6:34204672..34204692,+!p1@HMGA1!0.91!841.97!HMGA1;;chr17:41623692..41623715,-!p1@ETV4!0.91!32.02!ETV4;;chr11:65686732..65686756,+!p2@DRAP1!0.91!31.39!DRAP1;;chr2:200323414..200323455,-!p1@SATB2!0.91!15.70!SATB2;;chr20:55205825..55205847,+!p2@TFAP2C!0.91!7.22!TFAP2C;;chr6:10415276..10415341,-!p2@TFAP2A!0.90!8.48!TFAP2A;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.91!FOXC2;;chr2:101436564..101436647,+!p1@NPAS2!0.89!145.04!NPAS2;;chr6:126102254..126102289,+!p5@NCOA7!0.89!19.78!NCOA7;;chr2:172967353..172967365,-!p5@DLX2!0.88!6.59!DLX2;;chr15:67418099..67418118,+!p16@SMAD3!0.88!6.59!SMAD3;;chr9:129376201..129376225,+!p1@LMX1B!0.88!6.59!LMX1B;;chr3:12329397..12329433,+!p2@PPARG!0.87!15.07!PPARG;;chr17:41623009..41623053,-!p4@ETV4!0.87!10.67!ETV4;;chr13:45010939..45011033,-!p1@TSC22D1!0.86!436.68!TSC22D1;;chr12:66218255..66218304,+!p3@HMGA2!0.86!17.58!HMGA2;;chr5:174151612..174151633,+!p2@MSX2!0.86!6.28!MSX2;;chr12:27485823..27485868,+!p2@ARNTL2!0.85!26.37!ARNTL2;;chr12:66218378..66218401,+!p6@HMGA2!0.85!9.73!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.85!9.42!ETV4;;chr12:19592602..19592648,+!p1@AEBP2!0.84!73.46!AEBP2;;chr14:61116183..61116208,-!p1@SIX1!0.84!23.86!SIX1;;chr17:46682321..46682362,-!p1@HOXB6!0.84!5.96!HOXB6;;chr17:46687959..46688007,-!p2@HOXB7!0.83!8.16!HOXB7;;chr1:120190786..120190915,-!p1@ZNF697!0.82!43.32!ZNF697;;chr9:114287433..114287513,+!p1@ZNF483!0.82!15.38!ZNF483;;chr8:103665947..103665981,-!p3@KLF10!0.82!8.16!KLF10;;chr2:172967242..172967265,-!p2@DLX2!0.82!5.65!DLX2;;chr2:45168834..45168847,+!p2@SIX3!0.82!5.65!SIX3;;chr3:157823517..157823562,-!p1@SHOX2!0.81!5.96!SHOX2;;chr17:46126136..46126152,+!p1@NFE2L1!0.80!298.24!NFE2L1;;chr5:178157651..178157689,-!p1@ZNF354A!0.80!23.54!ZNF354A;;chr17:41622834..41622883,-!p6@ETV4!0.80!6.59!ETV4;;chr2:172967323..172967336,-!p4@DLX2!0.80!5.34!DLX2;;chr13:28543285..28543314,-!p2@CDX2!0.80!5.34!CDX2;;chr1:212782094..212782109,+!p1@ATF3!0.79!154.77!ATF3;;chr12:52445218..52445237,+!p1@NR4A1!0.79!71.58!NR4A1;;chr2:157189180..157189290,-!p1@NR4A2!0.79!28.88!NR4A2;;chr17:41622765..41622821,-!p2@ETV4!0.79!8.16!ETV4;;chr2:200322654..200322707,-!p2@SATB2!0.79!7.85!SATB2;;chr18:19749541..19749557,+!p1@GATA6!0.78!16.95!GATA6;;chr11:47279504..47279563,+!p1@NR1H3!0.78!12.24!NR1H3;;chr9:102584262..102584276,+!p1@NR4A3!0.78!11.93!NR4A3;;chr10:8095593..8095625,+!p3@GATA3!0.78!5.96!GATA3;;chr4:4291861..4291913,-!p1@LYAR!0.76!119.92!LYAR;;chr9:109625229..109625282,+!p2@ZNF462!0.76!8.16!ZNF462;;chr12:66218212..66218244,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|expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!1.89!88.22!PPARG;;chr2:172967621..172967637,-!p1@DLX2!1.55!89.16!DLX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.46!35.16!TFAP2C;;chr6:126240380..126240430,+!p2@NCOA7!1.42!64.04!NCOA7;;chr15:67418119..67418162,+!p5@SMAD3!1.34!22.92!SMAD3;;chr20:42543441..42543497,+!p1@TOX2!1.33!88.53!TOX2;;chr12:66218598..66218645,+!p2@HMGA2!1.29!83.82!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!1.28!43.01!TOX2;;chr6:126240442..126240459,+!p4@NCOA7!1.26!21.66!NCOA7;;chr16:86600426..86600441,+!p1@FOXC2!1.23!38.93!FOXC2;;chr1:25256756..25256774,-!p1@RUNX3!1.22!28.88!RUNX3;;chr2:176969228..176969260,+!p1@HOXD11!1.22!15.70!HOXD11;;chr11:65667884..65667895,-!p2@FOSL1!1.21!58.08!FOSL1;;chr12:66218836..66218888,+!p1@HMGA2!1.20!135.62!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!1.19!23.86!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.18!14.13!TFAP2A;;chr10:8096631..8096660,+!p1@GATA3!1.10!14.13!GATA3;;chr15:67391010..67391046,+!p13@SMAD3!1.10!11.62!SMAD3;;chr15:67418177..67418204,+!p9@SMAD3!1.10!11.62!SMAD3;;chr6:34204921..34204939,+!p3@HMGA1!1.09!340.62!HMGA1;;chr9:110252035..110252057,-!p1@KLF4!1.09!180.83!KLF4;;chr12:66218003..66218018,+!p9@HMGA2!1.09!13.81!HMGA2;;chr6:126240463..126240489,+!p6@NCOA7!1.09!12.87!NCOA7;;chr12:19592405..19592492,+!p2@AEBP2!1.08!95.75!AEBP2;;chr8:67525443..67525459,-!p2@MYBL1!1.07!16.01!MYBL1;;chr2:45168997..45169020,+!p4@SIX3!1.07!10.67!SIX3;;chr11:65667846..65667868,-!p1@FOSL1!1.06!280.97!FOSL1;;chr6:126102292..126102329,+!p3@NCOA7!1.06!35.16!NCOA7;;chr10:8096772..8096787,+!p2@GATA3!1.06!12.56!GATA3;;chr12:66218573..66218596,+!p7@HMGA2!1.05!15.38!HMGA2;;chr12:27485785..27485816,+!p1@ARNTL2!1.04!70.63!ARNTL2;;chr15:67418047..67418093,+!p4@SMAD3!1.03!12.24!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!1.03!9.73!FOXL1;;chr17:70117153..70117174,+!p1@SOX9!1.02!98.26!SOX9;;chr7:26191809..26191890,+!p1@NFE2L3!1.01!46.46!NFE2L3;;chr5:174151553..174151610,+!p1@MSX2!1.01!15.38!MSX2;;chr11:65686802..65686818,+!p6@DRAP1!1.00!16.01!DRAP1;;chr3:12329358..12329393,+!p3@PPARG!0.98!21.35!PPARG;;chr6:126240356..126240379,+!p7@NCOA7!0.98!10.67!NCOA7;;chr2:172950227..172950249,+!p2@DLX1!0.96!8.16!DLX1;;chr21:38071430..38071456,+!p1@SIM2!0.95!7.85!SIM2;;chr12:19592493..19592524,+!p3@AEBP2!0.93!21.03!AEBP2;;chr2:176969179..176969226,+!p2@HOXD11!0.93!7.53!HOXD11;;chr7:27153454..27153469,-!p2@HOXA3!0.93!7.53!HOXA3;;chr21:38071403..38071428,+!p2@SIM2!0.93!7.53!SIM2;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.48!TFAP2A;;chr6:34204672..34204692,+!p1@HMGA1!0.91!841.97!HMGA1;;chr17:41623692..41623715,-!p1@ETV4!0.91!32.02!ETV4;;chr11:65686732..65686756,+!p2@DRAP1!0.91!31.39!DRAP1;;chr2:200323414..200323455,-!p1@SATB2!0.91!15.70!SATB2;;chr20:55205825..55205847,+!p2@TFAP2C!0.91!7.22!TFAP2C;;chr6:10415276..10415341,-!p2@TFAP2A!0.90!8.48!TFAP2A;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.91!FOXC2;;chr2:101436564..101436647,+!p1@NPAS2!0.89!145.04!NPAS2;;chr6:126102254..126102289,+!p5@NCOA7!0.89!19.78!NCOA7;;chr2:172967353..172967365,-!p5@DLX2!0.88!6.59!DLX2;;chr15:67418099..67418118,+!p16@SMAD3!0.88!6.59!SMAD3;;chr9:129376201..129376225,+!p1@LMX1B!0.88!6.59!LMX1B;;chr3:12329397..12329433,+!p2@PPARG!0.87!15.07!PPARG;;chr17:41623009..41623053,-!p4@ETV4!0.87!10.67!ETV4;;chr13:45010939..45011033,-!p1@TSC22D1!0.86!436.68!TSC22D1;;chr12:66218255..66218304,+!p3@HMGA2!0.86!17.58!HMGA2;;chr5:174151612..174151633,+!p2@MSX2!0.86!6.28!MSX2;;chr12:27485823..27485868,+!p2@ARNTL2!0.85!26.37!ARNTL2;;chr12:66218378..66218401,+!p6@HMGA2!0.85!9.73!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.85!9.42!ETV4;;chr12:19592602..19592648,+!p1@AEBP2!0.84!73.46!AEBP2;;chr14:61116183..61116208,-!p1@SIX1!0.84!23.86!SIX1;;chr17:46682321..46682362,-!p1@HOXB6!0.84!5.96!HOXB6;;chr17:46687959..46688007,-!p2@HOXB7!0.83!8.16!HOXB7;;chr1:120190786..120190915,-!p1@ZNF697!0.82!43.32!ZNF697;;chr9:114287433..114287513,+!p1@ZNF483!0.82!15.38!ZNF483;;chr8:103665947..103665981,-!p3@KLF10!0.82!8.16!KLF10;;chr2:172967242..172967265,-!p2@DLX2!0.82!5.65!DLX2;;chr2:45168834..45168847,+!p2@SIX3!0.82!5.65!SIX3;;chr3:157823517..157823562,-!p1@SHOX2!0.81!5.96!SHOX2;;chr17:46126136..46126152,+!p1@NFE2L1!0.80!298.24!NFE2L1;;chr5:178157651..178157689,-!p1@ZNF354A!0.80!23.54!ZNF354A;;chr17:41622834..41622883,-!p6@ETV4!0.80!6.59!ETV4;;chr2:172967323..172967336,-!p4@DLX2!0.80!5.34!DLX2;;chr13:28543285..28543314,-!p2@CDX2!0.80!5.34!CDX2;;chr1:212782094..212782109,+!p1@ATF3!0.79!154.77!ATF3;;chr12:52445218..52445237,+!p1@NR4A1!0.79!71.58!NR4A1;;chr2:157189180..157189290,-!p1@NR4A2!0.79!28.88!NR4A2;;chr17:41622765..41622821,-!p2@ETV4!0.79!8.16!ETV4;;chr2:200322654..200322707,-!p2@SATB2!0.79!7.85!SATB2;;chr18:19749541..19749557,+!p1@GATA6!0.78!16.95!GATA6;;chr11:47279504..47279563,+!p1@NR1H3!0.78!12.24!NR1H3;;chr9:102584262..102584276,+!p1@NR4A3!0.78!11.93!NR4A3;;chr10:8095593..8095625,+!p3@GATA3!0.78!5.96!GATA3;;chr4:4291861..4291913,-!p1@LYAR!0.76!119.92!LYAR;;chr9:109625229..109625282,+!p2@ZNF462!0.76!8.16!ZNF462;;chr12:66218212..66218244,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Line 37: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3IKEI.CNhs11733.10606-108F3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3IKEI.CNhs11733.10606-108F3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3IKEI.CNhs11733.10606-108F3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3IKEI.CNhs11733.10606-108F3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3IKEI.CNhs11733.10606-108F3.hg38.nobarcode.ctss.bed.gz
|id=FF:10606-108F3
|id=FF:10606-108F3
|is_a=EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0001264
|is_a=EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0001264
|is_obsolete=
|is_obsolete=
|library_id=CNhs11733
|library_id_phase_based=2:CNhs11733
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10606
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10606
|name=embryonic pancreas cell line:1C3IKEI
|name=embryonic pancreas cell line:1C3IKEI
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 59:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11733,LSID819,release009,COMPLETED
|profile_hcage=CNhs11733,LSID819,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 61: Line 77:
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|sample_cell_line=1C3IKEI
Line 82: Line 99:
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.74094333144;bHLH_family:1.56307096428;FOXQ1:1.55212522008;ONECUT1,2:0.994552694307;PDX1:0.918669537732;POU6F1:0.862511520883;RORA:0.857444528323;HES1:0.762874883255;EGR1..3:0.755478026346;AIRE:0.731277921019;ELK1,4_GABP{A,B1}:0.615827543677;ADNP_IRX_SIX_ZHX:0.587493877374;TFDP1:0.578390258525;PAX8:0.575847494831;TFAP2B:0.575743948955;CEBPA,B_DDIT3:0.558203146653;NRF1:0.533466056162;FOS_FOS{B,L1}_JUN{B,D}:0.530499182142;XCPE1{core}:0.520325119879;E2F1..5:0.509980516885;RBPJ:0.492428186596;ZNF143:0.477172095213;NFE2:0.473310356647;SP1:0.468508408399;ZFP161:0.448345654961;NFIX:0.442638025509;PPARG:0.431417383596;STAT5{A,B}:0.421528011241;FOXD3:0.419615260375;FOXA2:0.408573002899;POU1F1:0.408185838428;BREu{core}:0.391007723843;NANOG:0.389378567264;TFAP2{A,C}:0.379535948085;PAX1,9:0.355051924655;HOXA9_MEIS1:0.320901615603;POU5F1:0.299638515412;BACH2:0.297163888166;NFE2L2:0.294049206977;ATF4:0.292014936469;GTF2A1,2:0.280987074137;HOX{A6,A7,B6,B7}:0.280540246252;PRRX1,2:0.270793450053;BPTF:0.254978369456;AHR_ARNT_ARNT2:0.252307593687;RFX1:0.224831514348;RXR{A,B,G}:0.219347519281;FOSL2:0.218213651483;PITX1..3:0.209520971251;TLX1..3_NFIC{dimer}:0.209502781635;FOX{F1,F2,J1}:0.19890071173;MYB:0.198273958402;PATZ1:0.19512166619;NKX2-1,4:0.194408843802;TEAD1:0.169136681154;ZNF148:0.164324941587;MED-1{core}:0.149014901487;GLI1..3:0.146747862905;CUX2:0.145949377821;ZNF423:0.121538070823;LEF1_TCF7_TCF7L1,2:0.121435337544;REST:0.104629935307;HIC1:0.102242731349;MYOD1:0.100615619855;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.100121620564;TBX4,5:0.0996106859253;ELF1,2,4:0.0974856821223;VSX1,2:0.0892453600675;PBX1:0.0845758728612;HLF:0.0808428006338;PAX5:0.0791808917118;IKZF2:0.0330577495273;T:0.0201455187206;SOX5:0.0196634457928;MTF1:0.0193254583637;NFKB1_REL_RELA:0.000658049538987;HNF1A:-0.00251795475052;YY1:-0.0108693921558;GATA6:-0.0241782457504;TP53:-0.0277010825239;PAX2:-0.0352742825597;FOX{D1,D2}:-0.0450487951287;EN1,2:-0.0493899345271;FOX{I1,J2}:-0.0528484097238;HOX{A5,B5}:-0.0602640948032;HNF4A_NR2F1,2:-0.0768481905555;SOX17:-0.0799016165932;NR6A1:-0.0842422766731;ZBTB6:-0.0925503361836;LHX3,4:-0.0984367643889;ZBTB16:-0.109551957873;NKX2-2,8:-0.110871410388;NKX3-1:-0.117329359828;NFY{A,B,C}:-0.118992342692;ALX1:-0.126086751593;OCT4_SOX2{dimer}:-0.144294880974;CDC5L:-0.147043577385;PRDM1:-0.151047401771;LMO2:-0.156006992616;SNAI1..3:-0.157192515981;NR3C1:-0.160935082621;ATF5_CREB3:-0.162652183376;ETS1,2:-0.185773526011;ZEB1:-0.214851692528;CRX:-0.223195155586;ESR1:-0.224733075929;RXRA_VDR{dimer}:-0.235856308156;GTF2I:-0.237042493589;MEF2{A,B,C,D}:-0.245442569786;SOX2:-0.251398518261;SOX{8,9,10}:-0.254435699277;MTE{core}:-0.259364498485;CDX1,2,4:-0.261467550364;SRF:-0.278698973512;MAZ:-0.286634615238;HIF1A:-0.291664531505;ZIC1..3:-0.311236686522;NFIL3:-0.31195286501;PAX3,7:-0.326593771395;IKZF1:-0.328710513278;FOXP1:-0.329259115818;EBF1:-0.342674258342;HSF1,2:-0.344610387179;CREB1:-0.349379374852;SPI1:-0.362307214767;RFX2..5_RFXANK_RFXAP:-0.364137853896;POU2F1..3:-0.370359987858;IRF7:-0.373576777124;ZNF384:-0.381257444655;ARID5B:-0.381531655948;HOX{A4,D4}:-0.382734030133;NHLH1,2:-0.388249193227;HBP1_HMGB_SSRP1_UBTF:-0.395095168037;JUN:-0.401157769985;NR5A1,2:-0.403438113538;SPIB:-0.416114898992;TAL1_TCF{3,4,12}:-0.421628898375;FOXN1:-0.423635042728;GZF1:-0.429027628464;ATF2:-0.430571204453;TFCP2:-0.433456111511;MYBL2:-0.442185843439;FOXM1:-0.445331584854;PAX4:-0.451626959667;ESRRA:-0.463595241374;RUNX1..3:-0.481436239859;GFI1:-0.489495972411;NFE2L1:-0.490434713707;NKX2-3_NKX2-5:-0.501611120664;DMAP1_NCOR{1,2}_SMARC:-0.502119863606;TEF:-0.505274864719;NFATC1..3:-0.517393218563;STAT1,3:-0.536887817174;TFAP4:-0.54776554558;NR1H4:-0.556568581656;ALX4:-0.557020353456;STAT2,4,6:-0.561011156025;XBP1:-0.566148290317;POU3F1..4:-0.571308200946;UFEwm:-0.600235152211;GFI1B:-0.619105236523;FOXL1:-0.634703452852;IRF1,2:-0.651925758467;AR:-0.659187050276;EVI1:-0.684880979945;RREB1:-0.767108494138;MYFfamily:-0.767680034841;NKX3-2:-0.771799281365;MZF1:-0.776103019633;KLF4:-0.806258438081;DBP:-0.832417731524;FOXO1,3,4:-0.847432071954;TOPORS:-0.870881465449;FOXP3:-0.884658343367;SMAD1..7,9:-0.889919299406;SREBF1,2:-0.895342950618;PAX6:-0.941553540913;HAND1,2:-0.962016691938;ZNF238:-1.00795122703;HMGA1,2:-1.0214881531;TBP:-1.02252652363;GATA4:-1.0284695173;GCM1,2:-1.0581108625;MAFB:-1.07166088879;NKX6-1,2:-1.07424639527;TGIF1:-1.11956264221;ATF6:-1.14170126152;HMX1:-1.14809716213;EP300:-1.20122520966;SPZ1:-1.33133839438;NANOG{mouse}:-1.44400822697;TLX2:-1.64817664105
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.74094333144;bHLH_family:1.56307096428;FOXQ1:1.55212522008;ONECUT1,2:0.994552694307;PDX1:0.918669537732;POU6F1:0.862511520883;RORA:0.857444528323;HES1:0.762874883255;EGR1..3:0.755478026346;AIRE:0.731277921019;ELK1,4_GABP{A,B1}:0.615827543677;ADNP_IRX_SIX_ZHX:0.587493877374;TFDP1:0.578390258525;PAX8:0.575847494831;TFAP2B:0.575743948955;CEBPA,B_DDIT3:0.558203146653;NRF1:0.533466056162;FOS_FOS{B,L1}_JUN{B,D}:0.530499182142;XCPE1{core}:0.520325119879;E2F1..5:0.509980516885;RBPJ:0.492428186596;ZNF143:0.477172095213;NFE2:0.473310356647;SP1:0.468508408399;ZFP161:0.448345654961;NFIX:0.442638025509;PPARG:0.431417383596;STAT5{A,B}:0.421528011241;FOXD3:0.419615260375;FOXA2:0.408573002899;POU1F1:0.408185838428;BREu{core}:0.391007723843;NANOG:0.389378567264;TFAP2{A,C}:0.379535948085;PAX1,9:0.355051924655;HOXA9_MEIS1:0.320901615603;POU5F1:0.299638515412;BACH2:0.297163888166;NFE2L2:0.294049206977;ATF4:0.292014936469;GTF2A1,2:0.280987074137;HOX{A6,A7,B6,B7}:0.280540246252;PRRX1,2:0.270793450053;BPTF:0.254978369456;AHR_ARNT_ARNT2:0.252307593687;RFX1:0.224831514348;RXR{A,B,G}:0.219347519281;FOSL2:0.218213651483;PITX1..3:0.209520971251;TLX1..3_NFIC{dimer}:0.209502781635;FOX{F1,F2,J1}:0.19890071173;MYB:0.198273958402;PATZ1:0.19512166619;NKX2-1,4:0.194408843802;TEAD1:0.169136681154;ZNF148:0.164324941587;MED-1{core}:0.149014901487;GLI1..3:0.146747862905;CUX2:0.145949377821;ZNF423:0.121538070823;LEF1_TCF7_TCF7L1,2:0.121435337544;REST:0.104629935307;HIC1:0.102242731349;MYOD1:0.100615619855;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.100121620564;TBX4,5:0.0996106859253;ELF1,2,4:0.0974856821223;VSX1,2:0.0892453600675;PBX1:0.0845758728612;HLF:0.0808428006338;PAX5:0.0791808917118;IKZF2:0.0330577495273;T:0.0201455187206;SOX5:0.0196634457928;MTF1:0.0193254583637;NFKB1_REL_RELA:0.000658049538987;HNF1A:-0.00251795475052;YY1:-0.0108693921558;GATA6:-0.0241782457504;TP53:-0.0277010825239;PAX2:-0.0352742825597;FOX{D1,D2}:-0.0450487951287;EN1,2:-0.0493899345271;FOX{I1,J2}:-0.0528484097238;HOX{A5,B5}:-0.0602640948032;HNF4A_NR2F1,2:-0.0768481905555;SOX17:-0.0799016165932;NR6A1:-0.0842422766731;ZBTB6:-0.0925503361836;LHX3,4:-0.0984367643889;ZBTB16:-0.109551957873;NKX2-2,8:-0.110871410388;NKX3-1:-0.117329359828;NFY{A,B,C}:-0.118992342692;ALX1:-0.126086751593;OCT4_SOX2{dimer}:-0.144294880974;CDC5L:-0.147043577385;PRDM1:-0.151047401771;LMO2:-0.156006992616;SNAI1..3:-0.157192515981;NR3C1:-0.160935082621;ATF5_CREB3:-0.162652183376;ETS1,2:-0.185773526011;ZEB1:-0.214851692528;CRX:-0.223195155586;ESR1:-0.224733075929;RXRA_VDR{dimer}:-0.235856308156;GTF2I:-0.237042493589;MEF2{A,B,C,D}:-0.245442569786;SOX2:-0.251398518261;SOX{8,9,10}:-0.254435699277;MTE{core}:-0.259364498485;CDX1,2,4:-0.261467550364;SRF:-0.278698973512;MAZ:-0.286634615238;HIF1A:-0.291664531505;ZIC1..3:-0.311236686522;NFIL3:-0.31195286501;PAX3,7:-0.326593771395;IKZF1:-0.328710513278;FOXP1:-0.329259115818;EBF1:-0.342674258342;HSF1,2:-0.344610387179;CREB1:-0.349379374852;SPI1:-0.362307214767;RFX2..5_RFXANK_RFXAP:-0.364137853896;POU2F1..3:-0.370359987858;IRF7:-0.373576777124;ZNF384:-0.381257444655;ARID5B:-0.381531655948;HOX{A4,D4}:-0.382734030133;NHLH1,2:-0.388249193227;HBP1_HMGB_SSRP1_UBTF:-0.395095168037;JUN:-0.401157769985;NR5A1,2:-0.403438113538;SPIB:-0.416114898992;TAL1_TCF{3,4,12}:-0.421628898375;FOXN1:-0.423635042728;GZF1:-0.429027628464;ATF2:-0.430571204453;TFCP2:-0.433456111511;MYBL2:-0.442185843439;FOXM1:-0.445331584854;PAX4:-0.451626959667;ESRRA:-0.463595241374;RUNX1..3:-0.481436239859;GFI1:-0.489495972411;NFE2L1:-0.490434713707;NKX2-3_NKX2-5:-0.501611120664;DMAP1_NCOR{1,2}_SMARC:-0.502119863606;TEF:-0.505274864719;NFATC1..3:-0.517393218563;STAT1,3:-0.536887817174;TFAP4:-0.54776554558;NR1H4:-0.556568581656;ALX4:-0.557020353456;STAT2,4,6:-0.561011156025;XBP1:-0.566148290317;POU3F1..4:-0.571308200946;UFEwm:-0.600235152211;GFI1B:-0.619105236523;FOXL1:-0.634703452852;IRF1,2:-0.651925758467;AR:-0.659187050276;EVI1:-0.684880979945;RREB1:-0.767108494138;MYFfamily:-0.767680034841;NKX3-2:-0.771799281365;MZF1:-0.776103019633;KLF4:-0.806258438081;DBP:-0.832417731524;FOXO1,3,4:-0.847432071954;TOPORS:-0.870881465449;FOXP3:-0.884658343367;SMAD1..7,9:-0.889919299406;SREBF1,2:-0.895342950618;PAX6:-0.941553540913;HAND1,2:-0.962016691938;ZNF238:-1.00795122703;HMGA1,2:-1.0214881531;TBP:-1.02252652363;GATA4:-1.0284695173;GCM1,2:-1.0581108625;MAFB:-1.07166088879;NKX6-1,2:-1.07424639527;TGIF1:-1.11956264221;ATF6:-1.14170126152;HMX1:-1.14809716213;EP300:-1.20122520966;SPZ1:-1.33133839438;NANOG{mouse}:-1.44400822697;TLX2:-1.64817664105
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10606-108F3;search_select_hide=table117:FF:10606-108F3
}}
}}

Latest revision as of 14:30, 3 June 2020

Name:embryonic pancreas cell line:1C3IKEI
Species:Human (Homo sapiens)
Library ID:CNhs11733
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepancreas
dev stageNA
sexunknown
age19 week embryo
cell typeunclassifiable
cell line1C3IKEI
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005854
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11733 CAGE DRX007874 DRR008746
Accession ID Hg19

Library idBAMCTSS
CNhs11733 DRZ000171 DRZ001556
Accession ID Hg38

Library idBAMCTSS
CNhs11733 DRZ011521 DRZ012906
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.068
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.183
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00771
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0616
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0224
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0186
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.00462
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.144
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.193
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11733

Jaspar motifP-value
MA0002.20.784
MA0003.10.736
MA0004.10.0203
MA0006.10.857
MA0007.10.67
MA0009.10.958
MA0014.10.295
MA0017.10.996
MA0018.20.539
MA0019.10.972
MA0024.10.0132
MA0025.10.955
MA0027.10.411
MA0028.10.00157
MA0029.10.0149
MA0030.10.0202
MA0031.10.3
MA0035.20.135
MA0038.10.514
MA0039.20.0301
MA0040.10.889
MA0041.10.291
MA0042.10.462
MA0043.10.4
MA0046.10.409
MA0047.20.0306
MA0048.10.127
MA0050.10.0061
MA0051.10.977
MA0052.10.47
MA0055.10.00183
MA0057.10.558
MA0058.10.0666
MA0059.10.6
MA0060.10.171
MA0061.10.348
MA0062.24.9463e-4
MA0065.20.721
MA0066.10.221
MA0067.10.515
MA0068.10.244
MA0069.10.565
MA0070.10.259
MA0071.10.851
MA0072.10.186
MA0073.10.998
MA0074.10.702
MA0076.10.00115
MA0077.10.272
MA0078.10.876
MA0079.20.23
MA0080.20.164
MA0081.10.504
MA0083.10.418
MA0084.10.706
MA0087.10.24
MA0088.10.847
MA0090.10.201
MA0091.10.00543
MA0092.10.12
MA0093.10.0154
MA0099.22.39227e-18
MA0100.10.873
MA0101.10.237
MA0102.20.814
MA0103.10.75
MA0104.20.202
MA0105.13.34915e-4
MA0106.10.462
MA0107.10.564
MA0108.20.137
MA0111.10.779
MA0112.20.00845
MA0113.10.137
MA0114.10.521
MA0115.10.0837
MA0116.10.00352
MA0117.10.181
MA0119.10.651
MA0122.10.385
MA0124.11
MA0125.10.785
MA0131.10.967
MA0135.10.824
MA0136.10.979
MA0137.20.973
MA0138.20.328
MA0139.10.888
MA0140.10.158
MA0141.10.979
MA0142.10.381
MA0143.10.23
MA0144.10.639
MA0145.10.284
MA0146.10.821
MA0147.10.16
MA0148.10.06
MA0149.10.0456
MA0150.10.171
MA0152.10.679
MA0153.10.66
MA0154.10.0157
MA0155.10.286
MA0156.10.012
MA0157.10.854
MA0159.10.969
MA0160.10.657
MA0162.10.113
MA0163.18.19239e-4
MA0164.10.387
MA0258.10.0492
MA0259.10.416



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11733

Novel motifP-value
10.189
100.222
1000.786
1010.552
1020.207
1030.727
1040.872
1050.954
1060.00171
1070.277
1080.284
1090.61
110.037
1100.229
1110.86
1120.0873
1130.0334
1140.325
1150.725
1160.115
1170.772
1180.322
1190.762
120.718
1200.397
1210.982
1220.143
1230.52
1240.273
1250.0853
1260.453
1270.908
1280.00229
1290.623
130.937
1300.0231
1310.103
1320.354
1330.208
1340.155
1350.0049
1360.304
1370.441
1380.683
1390.831
140.89
1400.296
1410.794
1420.537
1430.248
1440.318
1450.234
1460.89
1470.239
1480.481
1490.0696
150.406
1500.52
1510.478
1520.974
1530.329
1540.697
1550.157
1560.819
1570.603
1580.473
1590.688
160.24
1600.0957
1610.728
1620.418
1630.624
1640.138
1650.689
1660.115
1670.812
1680.798
1690.139
170.475
180.611
190.0571
20.223
200.0405
210.972
220.5
230.184
240.358
250.329
260.0275
270.0414
280.633
290.237
30.184
300.73
310.268
324.76787e-5
330.386
340.868
350.0556
360.584
370.192
380.57
390.441
40.299
400.752
410.474
420.983
430.101
440.0192
450.836
460.042
470.255
480.368
490.169
50.187
500.501
510.576
520.211
530.357
540.505
550.743
560.934
570.949
580.148
590.0329
60.21
600.0759
610.179
620.0192
630.536
640.143
650.206
660.0484
670.192
680.604
690.265
70.462
700.198
710.0453
720.0761
730.754
740.224
750.67
760.43
770.0972
780.834
790.00713
80.103
800.467
810.00943
820.0851
830.624
840.207
850.0231
860.423
870.252
880.105
890.0151
90.526
900.867
910.00693
920.0838
930.302
940.25
950.908
960.19
970.151
980.911
990.759



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11733


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100669 (embryonic cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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