FF:10702-109G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004671 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007832;DRR008704;DRZ000129;DRZ001514;DRZ011479;DRZ012864 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000014,UBERON:0002097,UBERON:0002199,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:3451,DOID:4159,DOID:0060122,DOID:2513 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/basal%2520cell%2520carcinoma%2520cell%2520line%253aTE%2520354%252eT.CNhs11932.10702-109G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/basal%2520cell%2520carcinoma%2520cell%2520line%253aTE%2520354%252eT.CNhs11932.10702-109G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/basal%2520cell%2520carcinoma%2520cell%2520line%253aTE%2520354%252eT.CNhs11932.10702-109G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/basal%2520cell%2520carcinoma%2520cell%2520line%253aTE%2520354%252eT.CNhs11932.10702-109G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/basal%2520cell%2520carcinoma%2520cell%2520line%253aTE%2520354%252eT.CNhs11932.10702-109G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10702-109G9 | |id=FF:10702-109G9 | ||
|is_a=DOID:2513;;EFO:0002091 | |is_a=DOID:2513;;EFO:0002091;;FF:0000210;;FF:0100297;;UBERON:0000014 | ||
|is_obsolete= | |||
|library_id=CNhs11932 | |||
|library_id_phase_based=2:CNhs11932 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10702 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10702 | |||
|name=basal cell carcinoma cell line:TE 354.T | |name=basal cell carcinoma cell line:TE 354.T | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11932,LSID835,release010,COMPLETED | |profile_hcage=CNhs11932,LSID835,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.125940506055367,0,0.256044485549641,-0.177367536204434,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132935525793325,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.117615805682075,0,0.270390337932619,0,0,0,0,0,0,0,0,0.080821003259673,0,0,0,0,0,0,0,0.0206234444394695,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.117615805682075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.310669506036871,0.0786576082657835,0,0.210072048745015,0,0.117615805682075,0.0195804544443683,-0.079669297959858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267988066658935,0,0,0,0.133066907139198,0.362449344252474,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0195804544443683,0,0.117615805682075,0.117615805682075,0,0,0,0,0,0.210072048745015,0,0,0.366704775970368,0,-0.474086218752008,-0.143515142523472,0,0,0.0996143049940916,0,0,0,0.0124069305066688,0,0,0.117615805682075,0,0,0.45159015497074,0,0.235845984552438,0,0,0,0,0.0976328238601635,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.30800910993147,0,-0.00326367811166596,0.0348956373586574,0,0.172075093971408,-0.04680465889238,0,0,0,0.22528609598312,-0.315645627617978,0,0,0.38529527277585,0.42807534979284,0,0,0.254518708839508,0,0.195831925168574,0.0704213843748575,0,-0.135305056688752,0,0,0,0,0,0,0,0.117615805682075,0.351053498032414,0,0,0.39981871084632,0.215627310596688,0,0,0,0,0.0398153017606665,0,0,-0.255670350274492,0.0166265596568922,0,-0.310311529390867,0,-0.302389727009913,0.0214018173415958,-0.578755650621444,-0.124827873437408,0.309910328296619,0.217442828829184,0,-0.144559218559415,-0.172388977858079,0.0350372844933277,-0.0276705532005139,-0.0258247424080542,0.154697346780423,0.0377926618633999,0,0,0,0.382954654025293,0,-0.141396782122193,0.184973618706844,-0.0565855897597715,0.187058046125995,0.088666974375528,0.00270739940240072,-0.16654579236257,-0.0395325284566706,-0.106382954864181,0,0.0600864171184537,0,0.457312177667757,0,-0.00785415395284925,0.0726727130674633,-0.158513995510922,0,0.058638445464676,0.0492715446047065,0,0.0742571776679108,-0.152915807913713,0,0,0.260685239794577,0,0,0,0,0,-0.0997713810102954,-0.082179965362409,-0.232855561555545,0,-0.123977811341922,-0.00946858231509505,-0.238478177511549,0,-0.090699238098834,0.140248638684359,0.0786842662702202,-0.24905829706146,0,-0.114773131848503,0.230962533582844,-0.0473748906569281,0.157315216531567,-0.0584468268118252,-0.116588282519799,-0.20632555726529,-0.310669506036871,0.297328297143749,-0.00589520216056283,-0.0881268324752877,0,0.366781007805701,-0.469426082876509,-0.037093845927362,0.215074272563826,0,0.1215033865863,0,0.0579052162066362,0,-0.204877797483253,0.0734498997826925,-0.321673568898612,-0.164275306683584,0,-0.141856392317146,-0.330818760106217,0,-0.0650349007129374,0.0117435173437902,0,-0.150367083334639,0.329336560605718,0.075813563810327,-0.033953432306687,-0.0485095297335079,0.317791075029603,0,0.117615805682075,0.347362251342591,-0.117860232082314,0,0.346259413252831,0.363835708894427,-0.0245060192719903,0.00164473224714062,0.117615805682075,0,-0.0659903160694204,0,0.210072048745015,-0.488312258135956,0.054010960544273,-0.00589967270270086,0.0329321946549973,0.006350850109046,-0.0498149066132183,0,0,0.108730770176577,0,0.0041146911791265,0,0,0.101172201433591,0.221796952194139,0,0,0,0.00844658363175165,0,0,0,0,0,0,0,0.00385550485976038,-0.068574794074695,0.286258536141753,-0.00797756505057001,0,0.117615805682075,0,0,0.407424548379032,0,0,1.0270325271183,0.513496391806288,0,-0.12301741567642,0,0,0,0,-0.0981075968714,-0.203236562094724,0.117615805682075,-0.014246900815557,0,0,0,0,0.0314748158928633,0,0,0,0,0.152341591691351,0.03807917214253,0,0,0,-0.159338595919716,0,0,0,0.0187254042202057,0.0231983941148644,0,0,0.244970412979829,0,-0.170485212889494,-0.0815818795468414,0,0.00288171407822499,0.174366781254414,-0.082685012058007,0,0,-0.143731326107813,0,0.12946021190959,0.0925061128295834,0,0,0,0,0,0,0,0,0,0.328301394875901,0.0631620883429475,0,0,0,0,0,0,0,0,0,0,0.132622692680872,0.0253917490235643,0.117615805682075,0,0,0,0,0,0,0.0935097826031717,-0.0790630785585794,0,0,0,0,0,0.117615805682075,0,0,-0.120372441630828,0,0,0,0,0,0.0206234444394695,0,0,0,0,-0.354735072408869,0,0,-0.159746326511439,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.256044485549641,0,0.117615805682075,0,0,0,0,0,0.267782609069566,0,0,0,0,-0.113884373708977,0,0,0,0.105275663955859,0,0.125940506055367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203712274189516,0.105036024372508,0,0,0.766700080079329,0.0388905972374258,0.016438824740689,0.0689416155905638,0,0,0.336564417783166,0,0,0,0,0,0,0.0274674788125103,0.117615805682075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105036024372508,-0.0348580438050884,0,0,0,0,0.117615805682075,0,0,-0.0979578962680575,0.117615805682075,0,-0.0332249069594888,0,0,0,0,0,0,-0.124132913443164,0.429169168785626,-0.0138961125044786,0,0,0,0.196641974760063,0,0,0,0,0.284276110613513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132935525793325,0,0,0,0,0,0,0,0,0,0,0,0,0.143129268070877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0836044424066583,0.117615805682075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0375973374134363,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0518833107173627,0,0,0,0,0,0,0,0,0.117615805682075,0,0.0134141205876112,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.432888236833638,0,0,0,0,0.0699786950211558,0,0,0,0,0,0,0,-0.087428497801853,0,0,0.210072048745015,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.493570715764385,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=5.6295 | |rna_weight_ug=5.6295 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-7762 | |sample_cell_catalog=CRL-7762 | ||
|sample_cell_line=TE 354.T | |sample_cell_line=TE 354.T | ||
| Line 69: | Line 90: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.58767731908031e-217!GO:0005737;cytoplasm;9.28610331155803e-188!GO:0043226;organelle;8.13186936149247e-142!GO:0043229;intracellular organelle;1.79383271826644e-141!GO:0043231;intracellular membrane-bound organelle;1.64420670576469e-136!GO:0043227;membrane-bound organelle;2.57062713173651e-136!GO:0044444;cytoplasmic part;2.60261545506627e-132!GO:0044422;organelle part;1.29927957286182e-110!GO:0044446;intracellular organelle part;3.44309957052126e-109!GO:0032991;macromolecular complex;6.81199558238046e-81!GO:0005515;protein binding;8.28157684001716e-80!GO:0030529;ribonucleoprotein complex;4.70066026782231e-65!GO:0044238;primary metabolic process;2.78041084468734e-63!GO:0044237;cellular metabolic process;1.03513285089818e-60!GO:0005739;mitochondrion;1.61842626713963e-59!GO:0043170;macromolecule metabolic process;1.36470562238782e-58!GO:0043233;organelle lumen;3.65824034017412e-55!GO:0031974;membrane-enclosed lumen;3.65824034017412e-55!GO:0019538;protein metabolic process;3.32338597540802e-51!GO:0031090;organelle membrane;1.81287639377243e-50!GO:0044428;nuclear part;1.26899881073023e-48!GO:0015031;protein transport;1.66417441304733e-46!GO:0003723;RNA binding;1.28777822062216e-45!GO:0016043;cellular component organization and biogenesis;2.63563035910793e-45!GO:0033036;macromolecule localization;4.04918089471929e-45!GO:0044260;cellular macromolecule metabolic process;4.04918089471929e-45!GO:0044267;cellular protein metabolic process;3.83684123525143e-44!GO:0045184;establishment of protein localization;1.72469334129915e-43!GO:0043234;protein complex;7.48598069379037e-43!GO:0008104;protein localization;1.52864232708051e-42!GO:0044429;mitochondrial part;4.47048412007614e-42!GO:0006412;translation;1.61222793763161e-40!GO:0005840;ribosome;9.11235045876269e-40!GO:0005634;nucleus;3.47627677276394e-37!GO:0005829;cytosol;5.71504639034886e-37!GO:0046907;intracellular transport;1.3147629117212e-36!GO:0031967;organelle envelope;1.95501101812919e-36!GO:0031975;envelope;4.36236948084431e-36!GO:0009058;biosynthetic process;1.22138297919227e-35!GO:0003735;structural constituent of ribosome;3.8636588823657e-35!GO:0006396;RNA processing;3.54280907550284e-33!GO:0009059;macromolecule biosynthetic process;4.14832962476536e-33!GO:0044249;cellular biosynthetic process;1.92753786017314e-32!GO:0033279;ribosomal subunit;7.32243452196069e-31!GO:0006886;intracellular protein transport;2.56670224040819e-30!GO:0031981;nuclear lumen;5.41824045955761e-30!GO:0005740;mitochondrial envelope;1.08488454230992e-28!GO:0016071;mRNA metabolic process;3.87350301649634e-28!GO:0008380;RNA splicing;4.14466848699346e-27!GO:0031966;mitochondrial membrane;4.30881272683218e-27!GO:0043283;biopolymer metabolic process;3.8239678536066e-26!GO:0019866;organelle inner membrane;2.32422945582876e-25!GO:0006397;mRNA processing;1.58910970094048e-24!GO:0005743;mitochondrial inner membrane;2.06053436627203e-24!GO:0051641;cellular localization;4.80445681745854e-24!GO:0051649;establishment of cellular localization;5.21598505759615e-24!GO:0006996;organelle organization and biogenesis;7.99297853733319e-24!GO:0065003;macromolecular complex assembly;8.86180291977395e-24!GO:0010467;gene expression;1.30941517684029e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.433482401541e-22!GO:0043228;non-membrane-bound organelle;4.14082648718945e-22!GO:0043232;intracellular non-membrane-bound organelle;4.14082648718945e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.98014606317406e-22!GO:0022607;cellular component assembly;1.17784065734563e-21!GO:0006119;oxidative phosphorylation;2.96187549385169e-21!GO:0006457;protein folding;1.3930479635654e-20!GO:0005794;Golgi apparatus;2.66425817543416e-20!GO:0012505;endomembrane system;4.44489879869447e-20!GO:0005783;endoplasmic reticulum;1.08756798575443e-19!GO:0044455;mitochondrial membrane part;1.34867029759868e-19!GO:0005681;spliceosome;3.94997606522383e-19!GO:0048770;pigment granule;4.34808292668065e-19!GO:0042470;melanosome;4.34808292668065e-19!GO:0005654;nucleoplasm;7.38869720542068e-19!GO:0044445;cytosolic part;1.46944064001771e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.72301614496585e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.87861488565691e-17!GO:0016874;ligase activity;9.97761925792216e-17!GO:0016462;pyrophosphatase activity;1.00058330163985e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.39337683855593e-16!GO:0017111;nucleoside-triphosphatase activity;1.5929488693342e-16!GO:0005746;mitochondrial respiratory chain;2.09845705267915e-16!GO:0006512;ubiquitin cycle;2.50257670275737e-16!GO:0016192;vesicle-mediated transport;3.53113740740642e-16!GO:0000166;nucleotide binding;3.69887772904069e-16!GO:0015935;small ribosomal subunit;5.20575701111301e-16!GO:0031980;mitochondrial lumen;5.45899135469826e-16!GO:0005759;mitochondrial matrix;5.45899135469826e-16!GO:0044451;nucleoplasm part;7.34362522950736e-16!GO:0048193;Golgi vesicle transport;7.50571543404751e-16!GO:0015934;large ribosomal subunit;8.24464217443002e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.36547250960103e-15!GO:0044432;endoplasmic reticulum part;1.48406456255536e-15!GO:0008134;transcription factor binding;2.10911643706769e-15!GO:0022618;protein-RNA complex assembly;4.58688200550968e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;4.64334787869374e-15!GO:0000502;proteasome complex (sensu Eukaryota);7.56897454909226e-15!GO:0019941;modification-dependent protein catabolic process;9.13013671469188e-15!GO:0043632;modification-dependent macromolecule catabolic process;9.13013671469188e-15!GO:0044257;cellular protein catabolic process;9.82128510858775e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.55167944470781e-14!GO:0051082;unfolded protein binding;2.12566066856755e-14!GO:0044265;cellular macromolecule catabolic process;2.12566066856755e-14!GO:0006605;protein targeting;2.53107833928035e-14!GO:0043412;biopolymer modification;2.61205484294852e-14!GO:0008135;translation factor activity, nucleic acid binding;3.29309022490979e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.67982949321407e-14!GO:0003954;NADH dehydrogenase activity;3.67982949321407e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.67982949321407e-14!GO:0051186;cofactor metabolic process;4.17864385488632e-14!GO:0043285;biopolymer catabolic process;5.43044158079606e-14!GO:0030163;protein catabolic process;1.13595586023438e-13!GO:0009057;macromolecule catabolic process;2.86047418555201e-13!GO:0006464;protein modification process;3.87039898629775e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.42195300816905e-13!GO:0005761;mitochondrial ribosome;1.42447947272216e-12!GO:0000313;organellar ribosome;1.42447947272216e-12!GO:0032553;ribonucleotide binding;1.46753356131372e-12!GO:0032555;purine ribonucleotide binding;1.46753356131372e-12!GO:0017076;purine nucleotide binding;1.61257152092353e-12!GO:0005793;ER-Golgi intermediate compartment;1.63467954038349e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.8292660374791e-12!GO:0045271;respiratory chain complex I;1.8292660374791e-12!GO:0005747;mitochondrial respiratory chain complex I;1.8292660374791e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.07405737680587e-12!GO:0042773;ATP synthesis coupled electron transport;2.07405737680587e-12!GO:0044248;cellular catabolic process;3.89616931725843e-12!GO:0005730;nucleolus;4.66200822144702e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.58651953644364e-12!GO:0009055;electron carrier activity;1.04848454152958e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.90852354829917e-11!GO:0019787;small conjugating protein ligase activity;2.22725197528212e-11!GO:0012501;programmed cell death;2.3635778115105e-11!GO:0008639;small protein conjugating enzyme activity;2.70527519954795e-11!GO:0006915;apoptosis;2.85236944875353e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.17341241294577e-11!GO:0004842;ubiquitin-protein ligase activity;4.76757271236983e-11!GO:0043687;post-translational protein modification;5.90475165051485e-11!GO:0006732;coenzyme metabolic process;7.84423019652058e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.39234348314803e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.24900064786468e-10!GO:0016881;acid-amino acid ligase activity;1.88204985585919e-10!GO:0008219;cell death;1.94126740470347e-10!GO:0016265;death;1.94126740470347e-10!GO:0006259;DNA metabolic process;2.52819736614428e-10!GO:0009259;ribonucleotide metabolic process;2.83166563877351e-10!GO:0006413;translational initiation;3.33660533223211e-10!GO:0003712;transcription cofactor activity;3.33976249424214e-10!GO:0005789;endoplasmic reticulum membrane;3.6423991990315e-10!GO:0003743;translation initiation factor activity;3.75038733946314e-10!GO:0048523;negative regulation of cellular process;7.65719591133735e-10!GO:0005768;endosome;7.93589868610577e-10!GO:0044431;Golgi apparatus part;1.18102664449551e-09!GO:0006163;purine nucleotide metabolic process;1.20494559190173e-09!GO:0009150;purine ribonucleotide metabolic process;1.20875678313198e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.45437793493186e-09!GO:0000375;RNA splicing, via transesterification reactions;1.45437793493186e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.45437793493186e-09!GO:0005524;ATP binding;1.4691801476556e-09!GO:0006446;regulation of translational initiation;1.48201997099972e-09!GO:0008565;protein transporter activity;1.74762593626617e-09!GO:0032559;adenyl ribonucleotide binding;2.03024774031187e-09!GO:0030120;vesicle coat;2.33561484292492e-09!GO:0030662;coated vesicle membrane;2.33561484292492e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.38650774594578e-09!GO:0030554;adenyl nucleotide binding;2.58376072064986e-09!GO:0009260;ribonucleotide biosynthetic process;2.97982590394002e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.51708222887022e-09!GO:0009141;nucleoside triphosphate metabolic process;4.41029531124719e-09!GO:0006888;ER to Golgi vesicle-mediated transport;4.51519332150715e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.05720668614958e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.05720668614958e-09!GO:0006913;nucleocytoplasmic transport;5.18795675355615e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.39425691884612e-09!GO:0007049;cell cycle;5.4438109575955e-09!GO:0006164;purine nucleotide biosynthetic process;5.55892783392901e-09!GO:0006461;protein complex assembly;6.12147695437068e-09!GO:0005635;nuclear envelope;8.4112107808439e-09!GO:0051169;nuclear transport;1.00562012833411e-08!GO:0048475;coated membrane;1.09888569438588e-08!GO:0030117;membrane coat;1.09888569438588e-08!GO:0031965;nuclear membrane;1.15986187995622e-08!GO:0048519;negative regulation of biological process;1.52807293011523e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.54121427051895e-08!GO:0003924;GTPase activity;1.76925874169254e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.51649514090493e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.51649514090493e-08!GO:0015986;ATP synthesis coupled proton transport;3.63289738655621e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.63289738655621e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.50838552849581e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.50838552849581e-08!GO:0046034;ATP metabolic process;5.98659801581891e-08!GO:0016604;nuclear body;6.09428144475324e-08!GO:0051246;regulation of protein metabolic process;6.2735119755916e-08!GO:0005798;Golgi-associated vesicle;7.88286792076353e-08!GO:0005788;endoplasmic reticulum lumen;8.39684854839274e-08!GO:0045333;cellular respiration;8.51085814570642e-08!GO:0044453;nuclear membrane part;9.77634747625224e-08!GO:0042254;ribosome biogenesis and assembly;9.84428664583576e-08!GO:0009060;aerobic respiration;9.85795430331156e-08!GO:0042623;ATPase activity, coupled;1.05960389669706e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.08061461971152e-07!GO:0016887;ATPase activity;1.23518380249095e-07!GO:0031988;membrane-bound vesicle;1.32350221459725e-07!GO:0017038;protein import;1.37276553414259e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.38517130892356e-07!GO:0009056;catabolic process;1.42607817471364e-07!GO:0019829;cation-transporting ATPase activity;2.905716367802e-07!GO:0031252;leading edge;3.46789131558256e-07!GO:0016070;RNA metabolic process;3.94096754521592e-07!GO:0016491;oxidoreductase activity;4.06712212760635e-07!GO:0007005;mitochondrion organization and biogenesis;4.38578759661698e-07!GO:0000139;Golgi membrane;4.7236869650659e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.77895937909498e-07!GO:0044440;endosomal part;4.87447500132798e-07!GO:0010008;endosome membrane;4.87447500132798e-07!GO:0030036;actin cytoskeleton organization and biogenesis;5.62907666223425e-07!GO:0006754;ATP biosynthetic process;5.718245886377e-07!GO:0006753;nucleoside phosphate metabolic process;5.718245886377e-07!GO:0003676;nucleic acid binding;6.15675545204671e-07!GO:0065002;intracellular protein transport across a membrane;6.49856467161755e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.59002391850674e-07!GO:0003714;transcription corepressor activity;6.77745163354767e-07!GO:0006399;tRNA metabolic process;7.04302641860422e-07!GO:0016607;nuclear speck;8.10475588836589e-07!GO:0005773;vacuole;1.02526484853637e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.06240238446053e-06!GO:0006916;anti-apoptosis;1.06861726587399e-06!GO:0042981;regulation of apoptosis;1.07043066950445e-06!GO:0043067;regulation of programmed cell death;1.10898414806433e-06!GO:0043069;negative regulation of programmed cell death;1.17994294460396e-06!GO:0008361;regulation of cell size;1.32935006086944e-06!GO:0051187;cofactor catabolic process;1.39836822182506e-06!GO:0006974;response to DNA damage stimulus;1.4314207309989e-06!GO:0043066;negative regulation of apoptosis;1.56147377337024e-06!GO:0022402;cell cycle process;1.58752471965762e-06!GO:0051789;response to protein stimulus;1.595815012994e-06!GO:0006986;response to unfolded protein;1.595815012994e-06!GO:0032446;protein modification by small protein conjugation;1.85012019399939e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.96737243604834e-06!GO:0006099;tricarboxylic acid cycle;1.98814117558431e-06!GO:0046356;acetyl-CoA catabolic process;1.98814117558431e-06!GO:0031982;vesicle;2.00239145323012e-06!GO:0007010;cytoskeleton organization and biogenesis;2.21699673353364e-06!GO:0016049;cell growth;2.36619535151312e-06!GO:0031410;cytoplasmic vesicle;2.47896736396812e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.47896736396812e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.47896736396812e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.47896736396812e-06!GO:0016567;protein ubiquitination;2.50181182314177e-06!GO:0051188;cofactor biosynthetic process;2.58335454146334e-06!GO:0005643;nuclear pore;2.67209034163054e-06!GO:0043038;amino acid activation;2.87315791778668e-06!GO:0006418;tRNA aminoacylation for protein translation;2.87315791778668e-06!GO:0043039;tRNA aminoacylation;2.87315791778668e-06!GO:0051726;regulation of cell cycle;2.88637800918943e-06!GO:0000074;regulation of progression through cell cycle;2.99552971613571e-06!GO:0009109;coenzyme catabolic process;2.99552971613571e-06!GO:0030133;transport vesicle;3.02362645439698e-06!GO:0006793;phosphorus metabolic process;3.2697440983584e-06!GO:0006796;phosphate metabolic process;3.2697440983584e-06!GO:0006366;transcription from RNA polymerase II promoter;3.85223058284092e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.90281143624931e-06!GO:0000151;ubiquitin ligase complex;4.26111810611323e-06!GO:0006084;acetyl-CoA metabolic process;4.49685294240488e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.49685294240488e-06!GO:0001558;regulation of cell growth;5.15752592811533e-06!GO:0030029;actin filament-based process;5.34978810939325e-06!GO:0009117;nucleotide metabolic process;6.20728264284529e-06!GO:0008654;phospholipid biosynthetic process;6.2103253141299e-06!GO:0008092;cytoskeletal protein binding;6.23914923312022e-06!GO:0006091;generation of precursor metabolites and energy;6.80805836865799e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.74171539139178e-06!GO:0045454;cell redox homeostasis;9.16193390273233e-06!GO:0005525;GTP binding;9.44340880624252e-06!GO:0005770;late endosome;9.46665473544761e-06!GO:0008026;ATP-dependent helicase activity;9.61000375534138e-06!GO:0006613;cotranslational protein targeting to membrane;1.22258887648553e-05!GO:0005905;coated pit;1.26144634138332e-05!GO:0000323;lytic vacuole;1.30659880875516e-05!GO:0005764;lysosome;1.30659880875516e-05!GO:0004386;helicase activity;1.61240957088002e-05!GO:0016787;hydrolase activity;1.7264989675033e-05!GO:0016740;transferase activity;1.88544183429454e-05!GO:0016564;transcription repressor activity;1.94892245708862e-05!GO:0046930;pore complex;1.97869481646499e-05!GO:0045259;proton-transporting ATP synthase complex;1.99985620856119e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.03453238966144e-05!GO:0005769;early endosome;2.07603458574409e-05!GO:0050794;regulation of cellular process;2.09533611755131e-05!GO:0000278;mitotic cell cycle;2.12281767918009e-05!GO:0016310;phosphorylation;2.18766686150937e-05!GO:0006403;RNA localization;2.73735813886629e-05!GO:0005667;transcription factor complex;2.93725418456708e-05!GO:0051170;nuclear import;3.13206910372653e-05!GO:0050657;nucleic acid transport;3.20641367283495e-05!GO:0051236;establishment of RNA localization;3.20641367283495e-05!GO:0050658;RNA transport;3.20641367283495e-05!GO:0006752;group transfer coenzyme metabolic process;3.48864391006542e-05!GO:0004298;threonine endopeptidase activity;3.85475323227638e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.01274453274101e-05!GO:0007243;protein kinase cascade;4.01789805392536e-05!GO:0009108;coenzyme biosynthetic process;4.10493569393841e-05!GO:0006606;protein import into nucleus;4.16778012996356e-05!GO:0030867;rough endoplasmic reticulum membrane;4.48702615751254e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.29728267304068e-05!GO:0015630;microtubule cytoskeleton;6.81408143884887e-05!GO:0032561;guanyl ribonucleotide binding;7.19700854270253e-05!GO:0019001;guanyl nucleotide binding;7.19700854270253e-05!GO:0016853;isomerase activity;7.19700854270253e-05!GO:0031324;negative regulation of cellular metabolic process;7.944686912577e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.55757466788922e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.66256918738731e-05!GO:0006281;DNA repair;8.67108791193686e-05!GO:0016044;membrane organization and biogenesis;9.61006074214449e-05!GO:0045786;negative regulation of progression through cell cycle;0.000104820718748923!GO:0031968;organelle outer membrane;0.000109068473622547!GO:0009719;response to endogenous stimulus;0.000109645059721521!GO:0016859;cis-trans isomerase activity;0.000120403408565261!GO:0044262;cellular carbohydrate metabolic process;0.000121064835125168!GO:0003713;transcription coactivator activity;0.000122147894976399!GO:0019867;outer membrane;0.000126603717103783!GO:0000245;spliceosome assembly;0.000132046660806576!GO:0006364;rRNA processing;0.000137989449163481!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000139902897435218!GO:0043566;structure-specific DNA binding;0.000144683204005537!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000160518875596851!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000166116683275766!GO:0019899;enzyme binding;0.000194393572165684!GO:0005048;signal sequence binding;0.000202002710897529!GO:0016072;rRNA metabolic process;0.000203724565371293!GO:0005762;mitochondrial large ribosomal subunit;0.00022006827782479!GO:0000315;organellar large ribosomal subunit;0.00022006827782479!GO:0005885;Arp2/3 protein complex;0.000222062915886713!GO:0030658;transport vesicle membrane;0.000225858338594591!GO:0040008;regulation of growth;0.000235509763484727!GO:0030663;COPI coated vesicle membrane;0.00026856355476926!GO:0030126;COPI vesicle coat;0.00026856355476926!GO:0043623;cellular protein complex assembly;0.000270923724938718!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000277780395102035!GO:0009892;negative regulation of metabolic process;0.000295624265041842!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000308653496916199!GO:0008250;oligosaccharyl transferase complex;0.000354687969041603!GO:0005741;mitochondrial outer membrane;0.000356022305105542!GO:0043021;ribonucleoprotein binding;0.000369619051818875!GO:0000314;organellar small ribosomal subunit;0.000376069445196238!GO:0005763;mitochondrial small ribosomal subunit;0.000376069445196238!GO:0046474;glycerophospholipid biosynthetic process;0.000376954490843486!GO:0006612;protein targeting to membrane;0.000400140463890235!GO:0003697;single-stranded DNA binding;0.000410604203263196!GO:0007264;small GTPase mediated signal transduction;0.000502482888201594!GO:0043284;biopolymer biosynthetic process;0.000504397827375228!GO:0051028;mRNA transport;0.000515329533757183!GO:0003724;RNA helicase activity;0.000521920160377511!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000522970091940315!GO:0045045;secretory pathway;0.000552668563309014!GO:0048522;positive regulation of cellular process;0.000570678325334057!GO:0016568;chromatin modification;0.000574852836496218!GO:0006323;DNA packaging;0.000597239992027298!GO:0008047;enzyme activator activity;0.000618628013706627!GO:0030137;COPI-coated vesicle;0.000637083911511326!GO:0004576;oligosaccharyl transferase activity;0.000648312918043386!GO:0050789;regulation of biological process;0.000668203853337645!GO:0016563;transcription activator activity;0.000677955843635513!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000724200661072924!GO:0030118;clathrin coat;0.0008048637582192!GO:0030660;Golgi-associated vesicle membrane;0.000808180338319729!GO:0051920;peroxiredoxin activity;0.000848427976566846!GO:0018196;peptidyl-asparagine modification;0.000856832036278777!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000856832036278777!GO:0006839;mitochondrial transport;0.000864742490397861!GO:0009967;positive regulation of signal transduction;0.000876420448094408!GO:0009165;nucleotide biosynthetic process;0.000903778726582558!GO:0005813;centrosome;0.0009170168165185!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000922337691592704!GO:0015399;primary active transmembrane transporter activity;0.000922337691592704!GO:0003746;translation elongation factor activity;0.000965917176176703!GO:0006414;translational elongation;0.000980660863749594!GO:0065009;regulation of a molecular function;0.00104475143030889!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00106192483614275!GO:0001726;ruffle;0.00111602865788919!GO:0051427;hormone receptor binding;0.00123736703692733!GO:0005791;rough endoplasmic reticulum;0.00125435561101953!GO:0048468;cell development;0.00135260348062932!GO:0006891;intra-Golgi vesicle-mediated transport;0.00135729994888959!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00140514876550393!GO:0030132;clathrin coat of coated pit;0.00142903038772097!GO:0016779;nucleotidyltransferase activity;0.00146733381280407!GO:0005815;microtubule organizing center;0.00170158008525898!GO:0046489;phosphoinositide biosynthetic process;0.00182726906224705!GO:0003779;actin binding;0.00184986629617698!GO:0030027;lamellipodium;0.00189182354557669!GO:0048471;perinuclear region of cytoplasm;0.00190774222243751!GO:0031072;heat shock protein binding;0.00199836712563597!GO:0051276;chromosome organization and biogenesis;0.00200207541236426!GO:0035257;nuclear hormone receptor binding;0.00201934010256618!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00202031836240623!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00202031836240623!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00202031836240623!GO:0043681;protein import into mitochondrion;0.00214456761330473!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00226751208795054!GO:0005583;fibrillar collagen;0.00230325512330446!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00234440053806315!GO:0048500;signal recognition particle;0.00236755949615933!GO:0046467;membrane lipid biosynthetic process;0.00236755949615933!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0024472451057236!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0024727096500464!GO:0051168;nuclear export;0.0024727096500464!GO:0065004;protein-DNA complex assembly;0.00253754768721407!GO:0019843;rRNA binding;0.00262538733424676!GO:0005096;GTPase activator activity;0.00266411153749846!GO:0030127;COPII vesicle coat;0.00305977780084518!GO:0012507;ER to Golgi transport vesicle membrane;0.00305977780084518!GO:0006650;glycerophospholipid metabolic process;0.00306548476122556!GO:0015631;tubulin binding;0.00310299071467535!GO:0030134;ER to Golgi transport vesicle;0.00324424254813838!GO:0048487;beta-tubulin binding;0.0033499153063224!GO:0007050;cell cycle arrest;0.00339057321361913!GO:0016481;negative regulation of transcription;0.00349199646082731!GO:0022890;inorganic cation transmembrane transporter activity;0.00351855548041288!GO:0007006;mitochondrial membrane organization and biogenesis;0.00352228690222318!GO:0006626;protein targeting to mitochondrion;0.00369365469819998!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00375478240410385!GO:0042802;identical protein binding;0.00378610155749288!GO:0006260;DNA replication;0.00379615613960667!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00382094868019088!GO:0005581;collagen;0.00412901526592693!GO:0051128;regulation of cellular component organization and biogenesis;0.00446058393522106!GO:0032940;secretion by cell;0.00448791852781534!GO:0030119;AP-type membrane coat adaptor complex;0.00450055775191861!GO:0003899;DNA-directed RNA polymerase activity;0.00450475379612868!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00462293952180367!GO:0045047;protein targeting to ER;0.00462293952180367!GO:0030125;clathrin vesicle coat;0.00471380624042734!GO:0030665;clathrin coated vesicle membrane;0.00471380624042734!GO:0000087;M phase of mitotic cell cycle;0.00472884718674627!GO:0051252;regulation of RNA metabolic process;0.00473008618937333!GO:0031543;peptidyl-proline dioxygenase activity;0.00480755103467007!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00496575274179645!GO:0043492;ATPase activity, coupled to movement of substances;0.00504684787787244!GO:0007067;mitosis;0.00507129694130611!GO:0030521;androgen receptor signaling pathway;0.0051268777887073!GO:0016197;endosome transport;0.00513454289238211!GO:0003729;mRNA binding;0.00533127352610931!GO:0015992;proton transport;0.00549981124445767!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00551333087785884!GO:0008022;protein C-terminus binding;0.00571375312611869!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00578272716909219!GO:0015002;heme-copper terminal oxidase activity;0.00578272716909219!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00578272716909219!GO:0004129;cytochrome-c oxidase activity;0.00578272716909219!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00584398436275592!GO:0008180;signalosome;0.00589093459052142!GO:0006818;hydrogen transport;0.0059733007946045!GO:0005869;dynactin complex;0.00617328977126942!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00622761447141494!GO:0051540;metal cluster binding;0.00632605596370847!GO:0051536;iron-sulfur cluster binding;0.00632605596370847!GO:0017166;vinculin binding;0.00654606069926774!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00659532745197367!GO:0051087;chaperone binding;0.00667924222954155!GO:0051301;cell division;0.00668157087414755!GO:0030659;cytoplasmic vesicle membrane;0.00675664834250023!GO:0008186;RNA-dependent ATPase activity;0.0067617528814634!GO:0005694;chromosome;0.00682766303303758!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00692973511864996!GO:0006595;polyamine metabolic process;0.00716430424124373!GO:0030176;integral to endoplasmic reticulum membrane;0.00721824640383074!GO:0006497;protein amino acid lipidation;0.00733859860807469!GO:0006383;transcription from RNA polymerase III promoter;0.00736596665605301!GO:0008312;7S RNA binding;0.00768712854645287!GO:0007160;cell-matrix adhesion;0.00806778120045726!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00826070586983007!GO:0005520;insulin-like growth factor binding;0.00826698285703782!GO:0031901;early endosome membrane;0.00832569788707439!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00841695803706483!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00844302349207882!GO:0003690;double-stranded DNA binding;0.00844391894698352!GO:0008139;nuclear localization sequence binding;0.00857004317542904!GO:0006007;glucose catabolic process;0.00858849533698002!GO:0030131;clathrin adaptor complex;0.00862604727530219!GO:0031589;cell-substrate adhesion;0.00882374813981722!GO:0008154;actin polymerization and/or depolymerization;0.00895052708109346!GO:0006354;RNA elongation;0.00919297432422456!GO:0006892;post-Golgi vesicle-mediated transport;0.00919297432422456!GO:0006509;membrane protein ectodomain proteolysis;0.00919637915128539!GO:0033619;membrane protein proteolysis;0.00919637915128539!GO:0019798;procollagen-proline dioxygenase activity;0.00925127041359134!GO:0031418;L-ascorbic acid binding;0.00925127041359134!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00927440141835363!GO:0050811;GABA receptor binding;0.00928642922500154!GO:0051329;interphase of mitotic cell cycle;0.00930590148015282!GO:0006897;endocytosis;0.0100393964631686!GO:0010324;membrane invagination;0.0100393964631686!GO:0004177;aminopeptidase activity;0.0108244587302514!GO:0000059;protein import into nucleus, docking;0.011078234771523!GO:0051287;NAD binding;0.0113822422953769!GO:0044420;extracellular matrix part;0.011397130354602!GO:0005862;muscle thin filament tropomyosin;0.0116960740013051!GO:0016363;nuclear matrix;0.0118204196158581!GO:0048144;fibroblast proliferation;0.0129235329085789!GO:0048145;regulation of fibroblast proliferation;0.0129235329085789!GO:0005801;cis-Golgi network;0.0131562955329688!GO:0007030;Golgi organization and biogenesis;0.0132193135220758!GO:0006333;chromatin assembly or disassembly;0.0133514248525963!GO:0008243;plasminogen activator activity;0.0133514248525963!GO:0000209;protein polyubiquitination;0.0135334095301954!GO:0030384;phosphoinositide metabolic process;0.013534931607252!GO:0022403;cell cycle phase;0.0135900732064273!GO:0007034;vacuolar transport;0.0137892055004701!GO:0044433;cytoplasmic vesicle part;0.0138794132977236!GO:0030140;trans-Golgi network transport vesicle;0.0139067640566461!GO:0031625;ubiquitin protein ligase binding;0.014155580474615!GO:0048518;positive regulation of biological process;0.0142666802640171!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0142711467148089!GO:0033043;regulation of organelle organization and biogenesis;0.0142711467148089!GO:0035258;steroid hormone receptor binding;0.0146168964677169!GO:0006118;electron transport;0.0146590036879498!GO:0043022;ribosome binding;0.0153467001916847!GO:0005874;microtubule;0.0154561779489366!GO:0030041;actin filament polymerization;0.0156924098797273!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0157393379421797!GO:0045792;negative regulation of cell size;0.0158789735717483!GO:0004004;ATP-dependent RNA helicase activity;0.0159102146532632!GO:0003711;transcription elongation regulator activity;0.0159356791944424!GO:0050662;coenzyme binding;0.0159968433980346!GO:0050681;androgen receptor binding;0.0161780119264113!GO:0001666;response to hypoxia;0.0164892203762927!GO:0030984;kininogen binding;0.0169539333515597!GO:0004213;cathepsin B activity;0.0169539333515597!GO:0004674;protein serine/threonine kinase activity;0.017377614295814!GO:0031902;late endosome membrane;0.0176883505971007!GO:0006740;NADPH regeneration;0.0177420279076629!GO:0006098;pentose-phosphate shunt;0.0177420279076629!GO:0030308;negative regulation of cell growth;0.0180405113978537!GO:0006082;organic acid metabolic process;0.0180405113978537!GO:0031529;ruffle organization and biogenesis;0.0181833157245092!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0181942910659554!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0181942910659554!GO:0035035;histone acetyltransferase binding;0.0184665573189836!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0188928997249989!GO:0051325;interphase;0.0192473092551558!GO:0019752;carboxylic acid metabolic process;0.0192581969506816!GO:0000339;RNA cap binding;0.0195436427410774!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0195990238113313!GO:0005684;U2-dependent spliceosome;0.0201009435755901!GO:0007040;lysosome organization and biogenesis;0.0209758031587791!GO:0007242;intracellular signaling cascade;0.021204883072231!GO:0048146;positive regulation of fibroblast proliferation;0.0213374044794812!GO:0051539;4 iron, 4 sulfur cluster binding;0.0214957393542261!GO:0012506;vesicle membrane;0.0219405698804933!GO:0005100;Rho GTPase activator activity;0.0222166783092027!GO:0000902;cell morphogenesis;0.0225417310907947!GO:0032989;cellular structure morphogenesis;0.0225417310907947!GO:0000287;magnesium ion binding;0.0225417310907947!GO:0050790;regulation of catalytic activity;0.0228449114528276!GO:0030518;steroid hormone receptor signaling pathway;0.0229237707702441!GO:0046519;sphingoid metabolic process;0.0229266027078849!GO:0007021;tubulin folding;0.0233234210106926!GO:0042158;lipoprotein biosynthetic process;0.0233634019490314!GO:0008632;apoptotic program;0.0234513891353801!GO:0000096;sulfur amino acid metabolic process;0.0235743599946548!GO:0051098;regulation of binding;0.0235743599946548!GO:0019318;hexose metabolic process;0.0238152140773341!GO:0046483;heterocycle metabolic process;0.0238932182716679!GO:0006979;response to oxidative stress;0.0243893081175876!GO:0000049;tRNA binding;0.02439150388845!GO:0005832;chaperonin-containing T-complex;0.02439150388845!GO:0030833;regulation of actin filament polymerization;0.0246135569866664!GO:0006417;regulation of translation;0.0246308127756452!GO:0016272;prefoldin complex;0.0247530273523305!GO:0007033;vacuole organization and biogenesis;0.0254014939004492!GO:0043488;regulation of mRNA stability;0.0255794267870338!GO:0043487;regulation of RNA stability;0.0255794267870338!GO:0007179;transforming growth factor beta receptor signaling pathway;0.025790848978938!GO:0007265;Ras protein signal transduction;0.0259508841639541!GO:0044427;chromosomal part;0.0260208715082227!GO:0033673;negative regulation of kinase activity;0.0265322066999941!GO:0006469;negative regulation of protein kinase activity;0.0265322066999941!GO:0005774;vacuolar membrane;0.0270323379005271!GO:0006611;protein export from nucleus;0.0271557290386532!GO:0008601;protein phosphatase type 2A regulator activity;0.0271557290386532!GO:0006506;GPI anchor biosynthetic process;0.0281797380685008!GO:0008610;lipid biosynthetic process;0.0281797380685008!GO:0030880;RNA polymerase complex;0.0284568593336828!GO:0005819;spindle;0.0285719437409995!GO:0030145;manganese ion binding;0.0291601025859237!GO:0009966;regulation of signal transduction;0.0295117996661128!GO:0019206;nucleoside kinase activity;0.0295117996661128!GO:0005996;monosaccharide metabolic process;0.0299491340912081!GO:0006607;NLS-bearing substrate import into nucleus;0.0302925907435227!GO:0018193;peptidyl-amino acid modification;0.0304064856756908!GO:0006402;mRNA catabolic process;0.0307631227919891!GO:0032984;macromolecular complex disassembly;0.0309907857601695!GO:0006352;transcription initiation;0.0309907857601695!GO:0007041;lysosomal transport;0.0312443379144191!GO:0051348;negative regulation of transferase activity;0.0318240246715303!GO:0043087;regulation of GTPase activity;0.0322632077093336!GO:0030032;lamellipodium biogenesis;0.0324484456724547!GO:0000082;G1/S transition of mitotic cell cycle;0.0326681056152356!GO:0008652;amino acid biosynthetic process;0.0328715249084303!GO:0022406;membrane docking;0.0328715249084303!GO:0048278;vesicle docking;0.0328715249084303!GO:0000785;chromatin;0.0329097842573431!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0334022415066344!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0334022415066344!GO:0030433;ER-associated protein catabolic process;0.0334535971302323!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0334535971302323!GO:0005099;Ras GTPase activator activity;0.0339292653351823!GO:0008538;proteasome activator activity;0.0353761692767529!GO:0006635;fatty acid beta-oxidation;0.0357603139989432!GO:0031124;mRNA 3'-end processing;0.0364945769953426!GO:0031371;ubiquitin conjugating enzyme complex;0.0365478323737684!GO:0008033;tRNA processing;0.0375713594125464!GO:0065007;biological regulation;0.0386750721202687!GO:0005975;carbohydrate metabolic process;0.0394209711401147!GO:0009225;nucleotide-sugar metabolic process;0.0395386401592829!GO:0030031;cell projection biogenesis;0.0396794970993201!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0396794970993201!GO:0006505;GPI anchor metabolic process;0.0399798587152531!GO:0016301;kinase activity;0.0399798587152531!GO:0031301;integral to organelle membrane;0.0405587593011535!GO:0022408;negative regulation of cell-cell adhesion;0.0408361838263277!GO:0016251;general RNA polymerase II transcription factor activity;0.0409816632344022!GO:0004722;protein serine/threonine phosphatase activity;0.0416382466650139!GO:0042168;heme metabolic process;0.0420489287179167!GO:0045893;positive regulation of transcription, DNA-dependent;0.0420823553178608!GO:0005588;collagen type V;0.0430122707013925!GO:0045892;negative regulation of transcription, DNA-dependent;0.0430122707013925!GO:0006984;ER-nuclear signaling pathway;0.0437725707970918!GO:0043624;cellular protein complex disassembly;0.0441012715910914!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0441012715910914!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.044490393272568!GO:0005938;cell cortex;0.0449773517876335!GO:0008287;protein serine/threonine phosphatase complex;0.0449773517876335!GO:0006778;porphyrin metabolic process;0.0449773517876335!GO:0033013;tetrapyrrole metabolic process;0.0449773517876335!GO:0016791;phosphoric monoester hydrolase activity;0.0450951106644574!GO:0000159;protein phosphatase type 2A complex;0.0454214089858771!GO:0051052;regulation of DNA metabolic process;0.0460515169610236!GO:0030508;thiol-disulfide exchange intermediate activity;0.0461190235257415!GO:0030911;TPR domain binding;0.0478299549487828!GO:0006096;glycolysis;0.0478601697231782!GO:0045941;positive regulation of transcription;0.0482168666657961!GO:0043065;positive regulation of apoptosis;0.0482168666657961!GO:0006643;membrane lipid metabolic process;0.0491581365090245!GO:0006672;ceramide metabolic process;0.0493822256737073!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.049442265106749!GO:0000428;DNA-directed RNA polymerase complex;0.049442265106749!GO:0003756;protein disulfide isomerase activity;0.0494815392755664!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0494815392755664!GO:0006518;peptide metabolic process;0.0495076656680898!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0495719180692304!GO:0006904;vesicle docking during exocytosis;0.049653267043964!GO:0043433;negative regulation of transcription factor activity;0.049949594592041 | |||
|sample_id=10702 | |sample_id=10702 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=HMGA1,2:2.50257335401;MYBL2:2.27554316273;EVI1:2.17167518789;HIF1A:1.97791784878;UFEwm:1.97239731939;XBP1:1.96966777481;ESR1:1.82565775745;ALX4:1.77242285506;GCM1,2:1.67093512387;SRF:1.65065320566;AIRE:1.57502839743;FOXL1:1.53078281748;GLI1..3:1.46724466396;NR3C1:1.46074883681;NKX3-2:1.33312069505;TP53:1.33029405149;TAL1_TCF{3,4,12}:1.28095576845;POU3F1..4:1.2421602752;NKX2-2,8:1.2372162244;NFATC1..3:1.19121091261;HMX1:1.17619570732;TEAD1:1.14012192015;PAX8:1.13936744022;NKX3-1:1.10436895524;FOX{I1,J2}:1.07207451219;ATF6:1.0636469366;KLF4:1.06201463201;IKZF1:1.01588021193;ZBTB6:0.945597782282;GATA4:0.943941839866;TFCP2:0.939869449547;GTF2A1,2:0.939807026718;MAFB:0.911890604353;GZF1:0.903149578907;LHX3,4:0.892996857394;PPARG:0.884849419535;NFIX:0.870787896345;ZIC1..3:0.86214049168;PAX4:0.848643369513;HOX{A5,B5}:0.825038785599;HES1:0.822572758249;SOX17:0.796513058202;POU1F1:0.750064585237;EBF1:0.739616053142;NFE2L1:0.736601843741;HOX{A4,D4}:0.731513273512;PRDM1:0.724852146628;EN1,2:0.704182173571;SPZ1:0.686024445654;XCPE1{core}:0.655477685677;ARID5B:0.636198954084;STAT5{A,B}:0.635237905594;TEF:0.606411857668;HBP1_HMGB_SSRP1_UBTF:0.600033251032;HLF:0.593076038339;HAND1,2:0.569493741557;NFE2L2:0.569443073726;NKX2-1,4:0.551802561547;MAZ:0.526256570541;ZBTB16:0.522795438855;MTE{core}:0.521788847091;TFAP4:0.510783961417;RXRA_VDR{dimer}:0.503603583955;ZNF384:0.497201859926;FOXM1:0.480229762358;FOXO1,3,4:0.476757980711;RXR{A,B,G}:0.439648389723;GTF2I:0.38998128158;TBX4,5:0.385636913963;TLX1..3_NFIC{dimer}:0.373535812166;TFAP2B:0.363964355146;EP300:0.350985423591;TBP:0.344067778647;FOXA2:0.343549707312;ZNF148:0.342912535152;AHR_ARNT_ARNT2:0.292495482869;STAT2,4,6:0.262510148887;NANOG{mouse}:0.255910374341;CDC5L:0.253714780622;ZNF238:0.242645963536;MEF2{A,B,C,D}:0.240310550266;HSF1,2:0.235715368705;TFAP2{A,C}:0.230080193404;GFI1B:0.213085509871;ONECUT1,2:0.198314781308;ADNP_IRX_SIX_ZHX:0.19671992867;HIC1:0.132046031467;FOXD3:0.129162273668;LEF1_TCF7_TCF7L1,2:0.117524980165;AR:0.104780450525;PAX1,9:0.0548878926735;NR6A1:0.0322649083158;SP1:0.0213946450874;FOSL2:0.0131194778857;FOS_FOS{B,L1}_JUN{B,D}:-0.0193352438027;BACH2:-0.0234436440162;DBP:-0.0451025238794;IRF1,2:-0.0950721492203;MZF1:-0.0955748788816;MYFfamily:-0.0968601064042;JUN:-0.102330956194;PAX3,7:-0.111596372614;FOXP3:-0.118725003988;RUNX1..3:-0.145305594256;TFDP1:-0.150481638699;REST:-0.16080684605;T:-0.172524287317;ZFP161:-0.174986627816;BPTF:-0.175815533586;PAX6:-0.179596223589;NFE2:-0.232133426451;MYB:-0.241361078538;PATZ1:-0.252530773462;NHLH1,2:-0.255131700932;POU6F1:-0.266554086838;EGR1..3:-0.267828063173;DMAP1_NCOR{1,2}_SMARC:-0.294550789624;PAX5:-0.301239284471;NFKB1_REL_RELA:-0.301359364037;NFIL3:-0.30438644693;ESRRA:-0.318030884553;bHLH_family:-0.318106366156;NKX2-3_NKX2-5:-0.318701508688;HNF1A:-0.328675294935;POU5F1:-0.354301592275;CREB1:-0.355912655232;PAX2:-0.364558851919;RFX1:-0.371600886209;TGIF1:-0.378103826513;FOX{D1,D2}:-0.384715511015;FOXN1:-0.38512619203;SMAD1..7,9:-0.387103840998;RREB1:-0.400372099317;HOXA9_MEIS1:-0.403670102738;ZNF423:-0.407065016815;TOPORS:-0.408933023253;LMO2:-0.41416709081;ATF2:-0.421923994197;NR5A1,2:-0.457218499739;SNAI1..3:-0.464471253876;NRF1:-0.464822772914;CEBPA,B_DDIT3:-0.479536997081;MED-1{core}:-0.485845457079;ZNF143:-0.488294845007;YY1:-0.509667403529;PRRX1,2:-0.513618561995;ELK1,4_GABP{A,B1}:-0.517633419091;OCT4_SOX2{dimer}:-0.523959739436;SPI1:-0.566850910646;ETS1,2:-0.578307420149;FOX{F1,F2,J1}:-0.598118141969;ZEB1:-0.600370980695;VSX1,2:-0.60618286853;RORA:-0.61701558957;FOXP1:-0.625406934713;ATF5_CREB3:-0.636628408689;FOXQ1:-0.641200568241;PITX1..3:-0.680810641736;HOX{A6,A7,B6,B7}:-0.690372017742;GFI1:-0.696932453979;SPIB:-0.701755867525;HNF4A_NR2F1,2:-0.704860895989;ATF4:-0.75865155703;SOX2:-0.759593131511;SOX5:-0.762957026238;GATA6:-0.763524010554;PDX1:-0.777824995073;ELF1,2,4:-0.843651031098;IRF7:-0.854994971999;NANOG:-0.870362737591;CUX2:-0.873960709579;BREu{core}:-0.887254012153;CDX1,2,4:-0.894978813523;E2F1..5:-0.926687492413;IKZF2:-0.930212423375;SREBF1,2:-0.954178804674;NR1H4:-0.978182064974;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.982201971767;MYOD1:-0.982840960482;MTF1:-1.00530990061;TLX2:-1.04577851701;STAT1,3:-1.07225573634;RFX2..5_RFXANK_RFXAP:-1.12296108088;CRX:-1.13227417014;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18860900509;POU2F1..3:-1.23017386085;NKX6-1,2:-1.28297169302;ALX1:-1.35563915596;SOX{8,9,10}:-1.42850125214;NFY{A,B,C}:-1.45116593142;PBX1:-1.48137655607;RBPJ:-1.73623536108 | |top_motifs=HMGA1,2:2.50257335401;MYBL2:2.27554316273;EVI1:2.17167518789;HIF1A:1.97791784878;UFEwm:1.97239731939;XBP1:1.96966777481;ESR1:1.82565775745;ALX4:1.77242285506;GCM1,2:1.67093512387;SRF:1.65065320566;AIRE:1.57502839743;FOXL1:1.53078281748;GLI1..3:1.46724466396;NR3C1:1.46074883681;NKX3-2:1.33312069505;TP53:1.33029405149;TAL1_TCF{3,4,12}:1.28095576845;POU3F1..4:1.2421602752;NKX2-2,8:1.2372162244;NFATC1..3:1.19121091261;HMX1:1.17619570732;TEAD1:1.14012192015;PAX8:1.13936744022;NKX3-1:1.10436895524;FOX{I1,J2}:1.07207451219;ATF6:1.0636469366;KLF4:1.06201463201;IKZF1:1.01588021193;ZBTB6:0.945597782282;GATA4:0.943941839866;TFCP2:0.939869449547;GTF2A1,2:0.939807026718;MAFB:0.911890604353;GZF1:0.903149578907;LHX3,4:0.892996857394;PPARG:0.884849419535;NFIX:0.870787896345;ZIC1..3:0.86214049168;PAX4:0.848643369513;HOX{A5,B5}:0.825038785599;HES1:0.822572758249;SOX17:0.796513058202;POU1F1:0.750064585237;EBF1:0.739616053142;NFE2L1:0.736601843741;HOX{A4,D4}:0.731513273512;PRDM1:0.724852146628;EN1,2:0.704182173571;SPZ1:0.686024445654;XCPE1{core}:0.655477685677;ARID5B:0.636198954084;STAT5{A,B}:0.635237905594;TEF:0.606411857668;HBP1_HMGB_SSRP1_UBTF:0.600033251032;HLF:0.593076038339;HAND1,2:0.569493741557;NFE2L2:0.569443073726;NKX2-1,4:0.551802561547;MAZ:0.526256570541;ZBTB16:0.522795438855;MTE{core}:0.521788847091;TFAP4:0.510783961417;RXRA_VDR{dimer}:0.503603583955;ZNF384:0.497201859926;FOXM1:0.480229762358;FOXO1,3,4:0.476757980711;RXR{A,B,G}:0.439648389723;GTF2I:0.38998128158;TBX4,5:0.385636913963;TLX1..3_NFIC{dimer}:0.373535812166;TFAP2B:0.363964355146;EP300:0.350985423591;TBP:0.344067778647;FOXA2:0.343549707312;ZNF148:0.342912535152;AHR_ARNT_ARNT2:0.292495482869;STAT2,4,6:0.262510148887;NANOG{mouse}:0.255910374341;CDC5L:0.253714780622;ZNF238:0.242645963536;MEF2{A,B,C,D}:0.240310550266;HSF1,2:0.235715368705;TFAP2{A,C}:0.230080193404;GFI1B:0.213085509871;ONECUT1,2:0.198314781308;ADNP_IRX_SIX_ZHX:0.19671992867;HIC1:0.132046031467;FOXD3:0.129162273668;LEF1_TCF7_TCF7L1,2:0.117524980165;AR:0.104780450525;PAX1,9:0.0548878926735;NR6A1:0.0322649083158;SP1:0.0213946450874;FOSL2:0.0131194778857;FOS_FOS{B,L1}_JUN{B,D}:-0.0193352438027;BACH2:-0.0234436440162;DBP:-0.0451025238794;IRF1,2:-0.0950721492203;MZF1:-0.0955748788816;MYFfamily:-0.0968601064042;JUN:-0.102330956194;PAX3,7:-0.111596372614;FOXP3:-0.118725003988;RUNX1..3:-0.145305594256;TFDP1:-0.150481638699;REST:-0.16080684605;T:-0.172524287317;ZFP161:-0.174986627816;BPTF:-0.175815533586;PAX6:-0.179596223589;NFE2:-0.232133426451;MYB:-0.241361078538;PATZ1:-0.252530773462;NHLH1,2:-0.255131700932;POU6F1:-0.266554086838;EGR1..3:-0.267828063173;DMAP1_NCOR{1,2}_SMARC:-0.294550789624;PAX5:-0.301239284471;NFKB1_REL_RELA:-0.301359364037;NFIL3:-0.30438644693;ESRRA:-0.318030884553;bHLH_family:-0.318106366156;NKX2-3_NKX2-5:-0.318701508688;HNF1A:-0.328675294935;POU5F1:-0.354301592275;CREB1:-0.355912655232;PAX2:-0.364558851919;RFX1:-0.371600886209;TGIF1:-0.378103826513;FOX{D1,D2}:-0.384715511015;FOXN1:-0.38512619203;SMAD1..7,9:-0.387103840998;RREB1:-0.400372099317;HOXA9_MEIS1:-0.403670102738;ZNF423:-0.407065016815;TOPORS:-0.408933023253;LMO2:-0.41416709081;ATF2:-0.421923994197;NR5A1,2:-0.457218499739;SNAI1..3:-0.464471253876;NRF1:-0.464822772914;CEBPA,B_DDIT3:-0.479536997081;MED-1{core}:-0.485845457079;ZNF143:-0.488294845007;YY1:-0.509667403529;PRRX1,2:-0.513618561995;ELK1,4_GABP{A,B1}:-0.517633419091;OCT4_SOX2{dimer}:-0.523959739436;SPI1:-0.566850910646;ETS1,2:-0.578307420149;FOX{F1,F2,J1}:-0.598118141969;ZEB1:-0.600370980695;VSX1,2:-0.60618286853;RORA:-0.61701558957;FOXP1:-0.625406934713;ATF5_CREB3:-0.636628408689;FOXQ1:-0.641200568241;PITX1..3:-0.680810641736;HOX{A6,A7,B6,B7}:-0.690372017742;GFI1:-0.696932453979;SPIB:-0.701755867525;HNF4A_NR2F1,2:-0.704860895989;ATF4:-0.75865155703;SOX2:-0.759593131511;SOX5:-0.762957026238;GATA6:-0.763524010554;PDX1:-0.777824995073;ELF1,2,4:-0.843651031098;IRF7:-0.854994971999;NANOG:-0.870362737591;CUX2:-0.873960709579;BREu{core}:-0.887254012153;CDX1,2,4:-0.894978813523;E2F1..5:-0.926687492413;IKZF2:-0.930212423375;SREBF1,2:-0.954178804674;NR1H4:-0.978182064974;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.982201971767;MYOD1:-0.982840960482;MTF1:-1.00530990061;TLX2:-1.04577851701;STAT1,3:-1.07225573634;RFX2..5_RFXANK_RFXAP:-1.12296108088;CRX:-1.13227417014;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18860900509;POU2F1..3:-1.23017386085;NKX6-1,2:-1.28297169302;ALX1:-1.35563915596;SOX{8,9,10}:-1.42850125214;NFY{A,B,C}:-1.45116593142;PBX1:-1.48137655607;RBPJ:-1.73623536108 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10702-109G9;search_select_hide=table117:FF:10702-109G9 | |||
}} | }} | ||
Latest revision as of 14:34, 3 June 2020
| Name: | basal cell carcinoma cell line:TE 354.T |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11932 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11932
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11932
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.521 |
| 10 | 10 | 0.847 |
| 100 | 100 | 0.592 |
| 101 | 101 | 0.776 |
| 102 | 102 | 0.404 |
| 103 | 103 | 0.248 |
| 104 | 104 | 0.621 |
| 105 | 105 | 0.104 |
| 106 | 106 | 0.00751 |
| 107 | 107 | 0.00916 |
| 108 | 108 | 0.145 |
| 109 | 109 | 0.999 |
| 11 | 11 | 0.476 |
| 110 | 110 | 0.917 |
| 111 | 111 | 0.506 |
| 112 | 112 | 0.0488 |
| 113 | 113 | 0.0557 |
| 114 | 114 | 0.0903 |
| 115 | 115 | 0.185 |
| 116 | 116 | 0.138 |
| 117 | 117 | 0.797 |
| 118 | 118 | 0.944 |
| 119 | 119 | 0.129 |
| 12 | 12 | 0.179 |
| 120 | 120 | 0.29 |
| 121 | 121 | 0.774 |
| 122 | 122 | 0.352 |
| 123 | 123 | 0.0508 |
| 124 | 124 | 0.392 |
| 125 | 125 | 0.371 |
| 126 | 126 | 0.516 |
| 127 | 127 | 0.401 |
| 128 | 128 | 0.0868 |
| 129 | 129 | 0.866 |
| 13 | 13 | 0.683 |
| 130 | 130 | 0.414 |
| 131 | 131 | 0.396 |
| 132 | 132 | 0.211 |
| 133 | 133 | 0.306 |
| 134 | 134 | 0.681 |
| 135 | 135 | 0.986 |
| 136 | 136 | 0.49 |
| 137 | 137 | 0.548 |
| 138 | 138 | 0.84 |
| 139 | 139 | 0.222 |
| 14 | 14 | 0.218 |
| 140 | 140 | 0.776 |
| 141 | 141 | 0.247 |
| 142 | 142 | 0.533 |
| 143 | 143 | 0.389 |
| 144 | 144 | 0.72 |
| 145 | 145 | 0.24 |
| 146 | 146 | 0.343 |
| 147 | 147 | 0.0922 |
| 148 | 148 | 0.961 |
| 149 | 149 | 0.00614 |
| 15 | 15 | 0.353 |
| 150 | 150 | 0.178 |
| 151 | 151 | 0.64 |
| 152 | 152 | 0.0172 |
| 153 | 153 | 0.321 |
| 154 | 154 | 0.592 |
| 155 | 155 | 0.128 |
| 156 | 156 | 0.733 |
| 157 | 157 | 0.429 |
| 158 | 158 | 0.053 |
| 159 | 159 | 0.271 |
| 16 | 16 | 0.0265 |
| 160 | 160 | 0.944 |
| 161 | 161 | 0.768 |
| 162 | 162 | 0.597 |
| 163 | 163 | 0.554 |
| 164 | 164 | 0.224 |
| 165 | 165 | 0.297 |
| 166 | 166 | 0.0503 |
| 167 | 167 | 0.411 |
| 168 | 168 | 0.701 |
| 169 | 169 | 0.105 |
| 17 | 17 | 0.367 |
| 18 | 18 | 0.0627 |
| 19 | 19 | 0.00655 |
| 2 | 2 | 0.677 |
| 20 | 20 | 0.773 |
| 21 | 21 | 0.182 |
| 22 | 22 | 0.306 |
| 23 | 23 | 0.0145 |
| 24 | 24 | 0.686 |
| 25 | 25 | 0.534 |
| 26 | 26 | 0.13 |
| 27 | 27 | 0.576 |
| 28 | 28 | 0.223 |
| 29 | 29 | 0.34 |
| 3 | 3 | 0.529 |
| 30 | 30 | 0.706 |
| 31 | 31 | 0.269 |
| 32 | 32 | 2.38343e-12 |
| 33 | 33 | 0.973 |
| 34 | 34 | 0.995 |
| 35 | 35 | 0.766 |
| 36 | 36 | 0.0229 |
| 37 | 37 | 0.0554 |
| 38 | 38 | 0.701 |
| 39 | 39 | 0.143 |
| 4 | 4 | 0.769 |
| 40 | 40 | 0.289 |
| 41 | 41 | 0.735 |
| 42 | 42 | 0.564 |
| 43 | 43 | 0.129 |
| 44 | 44 | 0.283 |
| 45 | 45 | 0.94 |
| 46 | 46 | 0.0685 |
| 47 | 47 | 0.774 |
| 48 | 48 | 0.889 |
| 49 | 49 | 0.492 |
| 5 | 5 | 0.303 |
| 50 | 50 | 0.869 |
| 51 | 51 | 0.931 |
| 52 | 52 | 0.505 |
| 53 | 53 | 0.238 |
| 54 | 54 | 0.551 |
| 55 | 55 | 0.255 |
| 56 | 56 | 0.942 |
| 57 | 57 | 0.348 |
| 58 | 58 | 0.763 |
| 59 | 59 | 0.0204 |
| 6 | 6 | 0.431 |
| 60 | 60 | 0.302 |
| 61 | 61 | 0.534 |
| 62 | 62 | 0.395 |
| 63 | 63 | 0.286 |
| 64 | 64 | 0.479 |
| 65 | 65 | 0.404 |
| 66 | 66 | 0.383 |
| 67 | 67 | 0.242 |
| 68 | 68 | 0.73 |
| 69 | 69 | 0.272 |
| 7 | 7 | 0.41 |
| 70 | 70 | 0.0399 |
| 71 | 71 | 0.357 |
| 72 | 72 | 0.624 |
| 73 | 73 | 0.00842 |
| 74 | 74 | 0.049 |
| 75 | 75 | 0.441 |
| 76 | 76 | 0.678 |
| 77 | 77 | 0.0236 |
| 78 | 78 | 0.895 |
| 79 | 79 | 0.0108 |
| 8 | 8 | 0.131 |
| 80 | 80 | 0.8 |
| 81 | 81 | 0.56 |
| 82 | 82 | 0.28 |
| 83 | 83 | 0.883 |
| 84 | 84 | 0.218 |
| 85 | 85 | 9.08655e-4 |
| 86 | 86 | 0.408 |
| 87 | 87 | 0.37 |
| 88 | 88 | 0.491 |
| 89 | 89 | 0.0294 |
| 9 | 9 | 0.929 |
| 90 | 90 | 0.343 |
| 91 | 91 | 0.531 |
| 92 | 92 | 0.0255 |
| 93 | 93 | 0.629 |
| 94 | 94 | 0.399 |
| 95 | 95 | 0.728 |
| 96 | 96 | 0.343 |
| 97 | 97 | 0.713 |
| 98 | 98 | 0.575 |
| 99 | 99 | 0.0654 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11932
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:2513 basal cell carcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
UBERON:0000014 zone of skin
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
3451 (skin carcinoma)
4159 (skin cancer)
0060122 (integumentary system cancer)
2513 (basal cell carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000014 (zone of skin)
0002097 (skin of body)
0002199 (integument)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
