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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005140
|DRA_sample_Accession=CAGE@SAMD00005140
|accession_numbers=CAGE;DRX007909;DRR008781;DRZ000206;DRZ001591
|accession_numbers=CAGE;DRX007909;DRR008781;DRZ000206;DRZ001591;DRZ011556;DRZ012941
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|ancestors_in_anatomy_facet=
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
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|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hereditary%2520spherocytic%2520anemia%2520cell%2520line%253aWIL2-NS.CNhs11891.10808-111A7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hereditary%2520spherocytic%2520anemia%2520cell%2520line%253aWIL2-NS.CNhs11891.10808-111A7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hereditary%2520spherocytic%2520anemia%2520cell%2520line%253aWIL2-NS.CNhs11891.10808-111A7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hereditary%2520spherocytic%2520anemia%2520cell%2520line%253aWIL2-NS.CNhs11891.10808-111A7.hg38.nobarcode.ctss.bed.gz
|id=FF:10808-111A7
|id=FF:10808-111A7
|is_a=DOID:2355;;EFO:0002091;;FF:0000210;;FF:0101524
|is_a=DOID:2355;;EFO:0002091;;FF:0000210;;FF:0101524
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|library_id=CNhs11891
|library_id=CNhs11891
|library_id_phase_based=2:CNhs11891
|library_id_phase_based=2:CNhs11891
|microRNAs=
|microRNAs_nn=
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10808
|name=hereditary spherocytic anemia cell line:WIL2-NS
|name=hereditary spherocytic anemia cell line:WIL2-NS
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_hcage="CNhs11891,LSID830,release010,COMPLETED"
|profile_hcage=CNhs11891,LSID830,release010,COMPLETED
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
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|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.48907557667;MYB:1.96120311355;NFY{A,B,C}:1.83068116767;ELK1,4_GABP{A,B1}:1.81959343233;HOX{A6,A7,B6,B7}:1.78302997368;E2F1..5:1.7618279803;POU2F1..3:1.72819147132;YY1:1.63290865751;PBX1:1.53073640814;PAX3,7:1.48707198443;ELF1,2,4:1.44957260983;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.38944075488;NRF1:1.29786280793;BREu{core}:1.29107722994;OCT4_SOX2{dimer}:1.25221011963;POU5F1:1.24931553069;AIRE:1.23001830093;ZNF143:1.147800517;GFI1:1.10961197665;PAX6:1.09236638746;PAX8:1.09143419056;CDX1,2,4:0.98681111789;NR5A1,2:0.855121089094;NKX6-1,2:0.841924439708;POU1F1:0.785680574602;RUNX1..3:0.770059433166;DMAP1_NCOR{1,2}_SMARC:0.748113675051;NANOG{mouse}:0.712411287724;FOXA2:0.706678864316;NFKB1_REL_RELA:0.694806650935;ZEB1:0.691423007887;IRF1,2:0.644388289267;SPI1:0.633173683457;PDX1:0.595005699586;SOX{8,9,10}:0.544998978687;FOXP3:0.497883937155;TFDP1:0.469208320849;PITX1..3:0.463365314893;ZBTB16:0.457544219344;RORA:0.455266426521;AHR_ARNT_ARNT2:0.420956763769;VSX1,2:0.414318100978;ADNP_IRX_SIX_ZHX:0.413281806042;ONECUT1,2:0.408358366967;ALX1:0.403870151357;CRX:0.388688799128;GATA6:0.379923552532;TOPORS:0.376222458864;bHLH_family:0.375768558193;PRRX1,2:0.347102324605;FOXN1:0.342670957615;CUX2:0.333311603564;GATA4:0.312326154061;POU6F1:0.299183149045;HOXA9_MEIS1:0.219374529573;POU3F1..4:0.215531760044;TGIF1:0.20097163676;NKX3-2:0.182248592242;IKZF2:0.181379079423;NKX3-1:0.175585253128;HNF4A_NR2F1,2:0.173727936513;SPIB:0.17255861979;ATF5_CREB3:0.134134045065;NFIL3:0.102314605421;ETS1,2:0.0956139534175;AR:0.0845067052481;IRF7:0.0626561108763;NANOG:0.0618234194948;TEF:0.0467180557665;HOX{A5,B5}:0.042297157966;FOXQ1:0.0221091812262;MYOD1:0.0173885734571;ZNF384:0.00320022677326;SOX17:0.00153502699948;ATF4:-0.00624437216424;TLX2:-0.0167028641959;CEBPA,B_DDIT3:-0.0263497904165;CDC5L:-0.0402933053903;ARID5B:-0.0517472794991;RFX1:-0.0535029614893;FOXP1:-0.0538288175994;RBPJ:-0.0572545687567;HSF1,2:-0.0848916547943;CREB1:-0.110045935929;PAX4:-0.119683126749;NFIX:-0.133748954424;HNF1A:-0.134720619772;ALX4:-0.139121746288;SNAI1..3:-0.145171013453;HAND1,2:-0.156789417525;LMO2:-0.159354619105;HIF1A:-0.173013936363;GFI1B:-0.176003625055;FOX{F1,F2,J1}:-0.188179373071;KLF4:-0.196151699742;MEF2{A,B,C,D}:-0.215800485887;IKZF1:-0.218436187525;PAX2:-0.219280045489;MYBL2:-0.247635942547;TAL1_TCF{3,4,12}:-0.247883761174;EVI1:-0.256322643279;NFE2:-0.256384936879;FOXM1:-0.25862323735;HOX{A4,D4}:-0.266642808319;FOSL2:-0.267934297706;T:-0.288560453688;STAT5{A,B}:-0.293313122873;HLF:-0.317579423381;NKX2-1,4:-0.354207135342;PRDM1:-0.393669539892;ESRRA:-0.397589237349;EN1,2:-0.403176109219;ZNF148:-0.407679221935;NKX2-3_NKX2-5:-0.41452016152;SRF:-0.457390746773;NKX2-2,8:-0.461968399819;EBF1:-0.467941831676;HES1:-0.469104703989;PPARG:-0.48832013126;UFEwm:-0.508877926114;ESR1:-0.525464439572;FOX{I1,J2}:-0.542991698542;NR6A1:-0.544490829442;FOS_FOS{B,L1}_JUN{B,D}:-0.545862274144;STAT2,4,6:-0.554268184795;RXR{A,B,G}:-0.559607908957;SPZ1:-0.563713871568;BPTF:-0.601053034652;BACH2:-0.62391805429;ZIC1..3:-0.634279842919;ZFP161:-0.642412514703;DBP:-0.643535300853;NFE2L2:-0.656166389013;GCM1,2:-0.658859373535;NR1H4:-0.665691457327;RFX2..5_RFXANK_RFXAP:-0.675044209686;FOXO1,3,4:-0.701222956763;HMGA1,2:-0.72313365772;LEF1_TCF7_TCF7L1,2:-0.730319814046;LHX3,4:-0.762433467858;SOX2:-0.763369287451;ATF2:-0.779336003964;NR3C1:-0.785077894618;SOX5:-0.810241333943;RXRA_VDR{dimer}:-0.813481428237;FOXD3:-0.819038023989;HBP1_HMGB_SSRP1_UBTF:-0.843756761958;TP53:-0.846295612245;NFE2L1:-0.940947450125;XBP1:-0.959769343325;NFATC1..3:-0.967740037191;MYFfamily:-0.988539790999;TBX4,5:-0.996886195493;SREBF1,2:-1.00207600722;MAFB:-1.00943433391;ZNF238:-1.01105111571;ZBTB6:-1.03563162447;RREB1:-1.0479343236;TBP:-1.05814511974;ZNF423:-1.05880323889;MZF1:-1.06429680497;TFAP4:-1.09921378439;GTF2I:-1.11434314307;NHLH1,2:-1.12258441105;REST:-1.12551765927;PAX1,9:-1.14074918678;JUN:-1.15339740077;TLX1..3_NFIC{dimer}:-1.16797407588;SMAD1..7,9:-1.17220985307;GTF2A1,2:-1.18834306295;EP300:-1.21428561113;TFCP2:-1.23718180538;TFAP2{A,C}:-1.24198702242;MED-1{core}:-1.25604629858;STAT1,3:-1.26838361933;FOXL1:-1.27714939525;HIC1:-1.31206782003;PAX5:-1.36758967756;MTE{core}:-1.37709645239;TEAD1:-1.40904648098;ATF6:-1.42014569171;GZF1:-1.42151027983;MTF1:-1.45100333828;XCPE1{core}:-1.48657529642;FOX{D1,D2}:-1.48989528923;PATZ1:-1.61320514425;GLI1..3:-1.71215641433;EGR1..3:-1.76496846441;MAZ:-1.76953690815;TFAP2B:-1.88512258443;HMX1:-2.00746546704;SP1:-2.31147318104
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10808-111A7;search_select_hide=table117:FF:10808-111A7
}}
}}

Latest revision as of 15:06, 3 June 2020

Name:hereditary spherocytic anemia cell line:WIL2-NS
Species:Human (Homo sapiens)
Library ID:CNhs11891
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
ageunknown
cell typeb cell
cell lineWIL2-NS
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005140
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11891 CAGE DRX007909 DRR008781
Accession ID Hg19

Library idBAMCTSS
CNhs11891 DRZ000206 DRZ001591
Accession ID Hg38

Library idBAMCTSS
CNhs11891 DRZ011556 DRZ012941
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.131
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.622
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0353
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0353
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0.824
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0914
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0321
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.266
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.227
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.225
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0371
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.826
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0184
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0035
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0814
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.623
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0413
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0353
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.202
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11891

Jaspar motifP-value
MA0002.20.074
MA0003.10.754
MA0004.10.034
MA0006.10.199
MA0007.10.277
MA0009.10.645
MA0014.10.593
MA0017.10.0866
MA0018.20.809
MA0019.10.148
MA0024.18.30168e-10
MA0025.10.567
MA0027.10.334
MA0028.13.862e-7
MA0029.10.416
MA0030.10.00157
MA0031.10.0438
MA0035.20.272
MA0038.10.0327
MA0039.20.373
MA0040.10.00984
MA0041.10.0919
MA0042.10.291
MA0043.10.426
MA0046.10.459
MA0047.20.299
MA0048.10.169
MA0050.11.40548e-7
MA0051.14.25855e-5
MA0052.10.764
MA0055.10.0123
MA0057.10.927
MA0058.10.0198
MA0059.11.59415e-4
MA0060.11.59835e-14
MA0061.10.0022
MA0062.22.33702e-11
MA0065.20.0186
MA0066.10.779
MA0067.10.697
MA0068.10.151
MA0069.10.282
MA0070.10.673
MA0071.10.611
MA0072.10.0602
MA0073.10.685
MA0074.10.557
MA0076.14.34502e-10
MA0077.10.377
MA0078.10.273
MA0079.20.119
MA0080.20.00179
MA0081.10.0349
MA0083.10.0323
MA0084.10.093
MA0087.10.0404
MA0088.15.37063e-4
MA0090.18.64946e-6
MA0091.10.567
MA0092.10.88
MA0093.10.0228
MA0099.20.00748
MA0100.10.0166
MA0101.10.0049
MA0102.20.154
MA0103.10.151
MA0104.26.7735e-5
MA0105.17.21916e-5
MA0106.10.344
MA0107.10.00649
MA0108.26.5201e-8
MA0111.10.498
MA0112.20.359
MA0113.10.756
MA0114.10.0123
MA0115.10.124
MA0116.12.69588e-4
MA0117.10.808
MA0119.10.799
MA0122.10.473
MA0124.10.603
MA0125.10.234
MA0131.10.0863
MA0135.10.602
MA0136.12.8387e-8
MA0137.20.238
MA0138.20.42
MA0139.10.0898
MA0140.10.0422
MA0141.10.0891
MA0142.10.0282
MA0143.10.188
MA0144.10.367
MA0145.10.452
MA0146.10.712
MA0147.12.48917e-5
MA0148.10.283
MA0149.10.154
MA0150.10.817
MA0152.10.286
MA0153.10.0528
MA0154.10.032
MA0155.10.659
MA0156.12.64166e-10
MA0157.10.818
MA0159.10.196
MA0160.10.496
MA0162.10.78
MA0163.12.00722e-10
MA0164.10.793
MA0258.10.409
MA0259.10.038



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11891

Novel motifP-value
10.00495
100.0165
1000.348
1010.0627
1020.661
1030.139
1040.359
1050.668
1060.341
1070.128
1080.883
1090.027
110.0724
1100.0967
1110.117
1120.923
1130.625
1140.505
1150.825
1160.648
1170.00884
1180.149
1190.185
120.993
1200.296
1210.674
1220.504
1230.0085
1240.107
1250.391
1260.315
1270.104
1280.275
1290.502
130.0439
1300.283
1310.378
1320.104
1330.531
1340.513
1350.559
1360.182
1370.819
1380.513
1390.516
140.953
1400.698
1410.0284
1420.989
1430.0978
1440.559
1450.258
1460.894
1470.967
1480.0981
1490.306
150.0352
1500.998
1510.616
1520.0388
1530.998
1540.641
1550.322
1560.796
1570.146
1580.968
1590.248
160.961
1600.224
1610.0553
1620.772
1630.439
1640.266
1650.868
1660.482
1670.0728
1680.537
1690.937
170.981
180.185
190.783
20.596
200.378
210.128
220.894
230.0328
240.308
250.213
260.0276
270.688
280.302
290.00882
30.111
300.156
310.969
320.395
330.304
340.352
350.061
360.0392
370.307
380.559
390.327
40.137
400.264
410.754
420.0485
430.592
440.0901
450.431
460.179
470.0173
480.112
490.272
50.976
500.744
510.742
520.083
530.611
540.774
550.745
560.696
570.226
580.314
590.777
60.774
600.671
610.057
620.303
630.813
640.176
650.764
660.00604
670.275
680.0269
690.704
70.0972
700.54
710.0178
720.564
730.901
740.792
750.00307
760.474
770.749
780.272
790.0537
80.068
800.458
810.227
820.658
830.149
840.917
850.29
860.251
870.182
880.705
890.636
90.578
900.124
910.0314
920.683
930.332
940.243
950.0137
960.554
970.142
980.311
990.817



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11891


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1287 (cardiovascular system disease)
7 (disease of anatomical entity)
74 (hematopoietic system disease)
2355 (anemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0101518 (B-lymphoma cell line sample)
0101524 (WIL2-NS cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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