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(Created page with "{{f5samples |id=FF:11269-116G9 |name=Fibroblast - Dermal, donor1 |sample_id=11269 |rna_tube_id=116G9 |rna_box=116 |rna_position=G9 |sample_cell_lot=N/A |sample_cell_ca...")
 
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{{f5samples
{{f5samples
|id=FF:11269-116G9
|DRA_sample_Accession=CAGE@SAMD00004983
|name=Fibroblast - Dermal, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004983
|sample_id=11269
|accession_numbers=CAGE;DRX008254;DRR009126;DRZ000551;DRZ001936;DRZ011901;DRZ013286
|rna_tube_id=116G9
|accession_numbers_RNASeq=sRNA-Seq;DRX036992;DRR041358;DRZ007000
|rna_box=116
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
|rna_position=G9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1378.00000
|rna_catalog_number=CA106-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=71 years old adult
|sample_tissue=skin
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=71
|sample_ethnicity=U
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6
|profile_hcage=CNhs12499,LSID916,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10002,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002551,CL:0002620
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002067,UBERON:0002097,UBERON:0002199,UBERON:0002329,UBERON:0002384,UBERON:0002416,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003102,UBERON:0003104,UBERON:0004016,UBERON:0004120,UBERON:0004290,UBERON:0004923,UBERON:0005291,UBERON:0005423,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.83!1859.85!HMGA1;;chr1:170632285..170632309,+!p1@PRRX1!1.62!45.89!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.55!107.70!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.50!40.89!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.47!48.07!TWIST2;;chr12:66218836..66218888,+!p1@HMGA2!1.46!247.86!HMGA2;;chr3:12330560..12330579,+!p1@PPARG!1.45!30.90!PPARG;;chr2:19558373..19558392,-!p1@OSR1!1.37!60.87!OSR1;;chr6:134210243..134210257,+!p1@TCF21!1.35!21.23!TCF21;;chr12:66218255..66218304,+!p3@HMGA2!1.32!52.44!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.22!TCF12;;chr12:66218923..66218934,+!p14@HMGA2!1.30!18.73!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.30!18.73!HIF3A;;chr12:66218598..66218645,+!p2@HMGA2!1.29!84.60!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.27!17.48!EBF2;;chr12:66218904..66218913,+!p11@HMGA2!1.24!16.23!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.23!18.42!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.20!26.53!ZFP106;;chr11:47279504..47279563,+!p1@NR1H3!1.19!33.09!NR1H3;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.12!DRAP1;;chr3:12329397..12329433,+!p2@PPARG!1.15!29.66!PPARG;;chr17:59477233..59477263,+!p1@TBX2!1.14!39.64!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!1.14!12.80!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.86!IRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.10!15.30!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!1.08!10.93!RFX8;;chr8:128748308..128748324,+!p2@MYC!1.07!301.23!MYC;;chr11:65686802..65686818,+!p6@DRAP1!1.07!18.73!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.95!DRAP1;;chr3:141105705..141105770,+!p4@ZBTB38!1.05!12.49!ZBTB38;;chr1:170632723..170632739,+!p8@PRRX1!1.03!9.68!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.05!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.99!56.50!SNAI2;;chr2:223163706..223163730,-!p1@PAX3!0.99!8.74!PAX3;;chr3:138665937..138665968,-!p1@FOXL2!0.96!8.12!FOXL2;;chr6:85474299..85474324,-!p1@TBX18!0.95!14.36!TBX18;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.99!HMGA2;;chr12:85673977..85674015,+!p1@ALX1!0.94!7.80!ALX1;;chr11:65667884..65667895,-!p2@FOSL1!0.93!29.97!FOSL1;;chr7:19157248..19157268,-!p1@TWIST1!0.93!21.54!TWIST1;;chr4:26322267..26322334,+!p3@RBPJ!0.92!18.11!RBPJ;;chr5:133450365..133450444,+!p1@TCF7!0.88!31.53!TCF7;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.56!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.88!6.56!HMGA2;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.87!SHOX2;;chr15:57511589..57511608,+!p4@TCF12!0.86!6.24!TCF12;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.61!PPARG;;chr20:55204351..55204377,+!p1@TFAP2C!0.85!7.80!TFAP2C;;chr6:34204973..34204990,+!p4@HMGA1!0.84!83.66!HMGA1;;chr12:66357214..66357233,+!p13@HMGA2!0.84!5.93!HMGA2;;chr12:53614115..53614154,-!p1@RARG!0.83!33.09!RARG;;chr11:46299199..46299233,+!p1@CREB3L1!0.82!30.90!CREB3L1;;chr2:200323414..200323455,-!p1@SATB2!0.81!12.17!SATB2;;chr12:66218212..66218244,+!p5@HMGA2!0.81!8.12!HMGA2;;chr11:65687222..65687240,+!p7@DRAP1!0.81!7.18!DRAP1;;chr1:170632137..170632172,+!p10@PRRX1!0.80!5.31!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.80!5.31!EN1;;chr16:86600426..86600441,+!p1@FOXC2!0.79!13.42!FOXC2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.42!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.78!10.30!NR2F2;;chr2:102091144..102091183,-!p2@RFX8!0.78!4.99!RFX8;;chr2:175199675..175199688,+!p1@SP9!0.78!4.99!SP9;;chr12:115122318..115122331,-!p2@TBX3!0.78!4.99!TBX3;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.72!ETV1;;chr6:34205372..34205412,+!p5@HMGA1!0.77!26.85!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!0.77!23.72!TOX2;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.68!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!0.76!7.49!IFI16;;chr17:59477275..59477286,+!p3@TBX2!0.76!6.56!TBX2;;chr6:34204672..34204692,+!p1@HMGA1!0.75!578.43!HMGA1;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.18!NFIX;;chr12:66218573..66218596,+!p7@HMGA2!0.75!7.18!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.75!5.31!NR1H3;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.68!HOXD8;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.68!TBX2;;chr17:59477197..59477212,+!p2@TBX2!0.74!8.12!TBX2;;chr2:200322654..200322707,-!p2@SATB2!0.74!6.87!SATB2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.52!SNAI2;;chr17:7492684..7492778,-!p2@SOX15!0.73!9.99!SOX15;;chr12:66218469..66218477,+!p16@HMGA2!0.73!4.37!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.37!KDM5D;;chr5:174151553..174151610,+!p1@MSX2!0.70!7.18!MSX2;;chr12:66218378..66218401,+!p6@HMGA2!0.70!6.56!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!0.70!5.62!EBF1;;chr12:85674018..85674039,+!p3@ALX1!0.70!4.06!ALX1;;chr1:170632683..170632696,+!p12@PRRX1!0.70!4.06!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.70!4.06!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.69!10.61!EBF1;;chr17:1959369..1959388,+!p2@HIC1!0.68!10.93!HIC1;;chr14:24837368..24837401,+!p1@NFATC4!0.68!9.68!NFATC4;;chr11:65687243..65687276,+!p8@DRAP1!0.68!5.31!DRAP1;;chr10:131762504..131762555,-!p1@EBF3!0.68!3.75!EBF3;;chr11:65688877..65688891,+!p13@DRAP1!0.68!3.75!DRAP1;;chr1:170632439..170632465,+!p11@PRRX1!0.68!3.75!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.68!3.75!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.68!3.75!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.68!3.75!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.68!3.75!PRRX2;;chr11:65667846..65667868,-!p1@FOSL1!0.67!112.38!FOSL1;;chr12:115121962..115121987,-!p1@TBX3!0.67!35.59!TBX3;;chr5:321810..321877,+!p1@AHRR!0.67!13.11!AHRR;;chr17:41622765..41622821,-!p2@ETV4!0.67!5.93!ETV4;;chr8:128750654..128750793,+!p3@MYC!0.66!16.54!MYC;;chr11:46299539..46299620,+!p2@CREB3L1!0.66!6.56!CREB3L1;;chr8:128747661..128747703,+!p6@MYC!0.65!4.99!MYC;;chr16:86612320..86612394,+!p1@FOXL1!0.65!3.43!FOXL1;;chr3:138665969..138665993,-!p2@FOXL2!0.65!3.43!FOXL2;;chr20:42543506..42543549,+!p2@TOX2!0.63!8.74!TOX2;;chr5:43067636..43067674,+!p6@ZNF131!0.63!4.68!ZNF131;;chr8:128747757..128747800,+!p7@MYC!0.63!4.68!MYC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.62!3.12!RUNX1T1;;chr1:170632115..170632136,+!p9@PRRX1!0.62!3.12!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.12!CREB3L1;;chr12:66218420..66218439,+!p12@HMGA2!0.62!3.12!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.62!3.12!ZFY;;chr2:177016272..177016286,+!p2@HOXD4!0.62!3.12!HOXD4;;chr2:191906489..191906517,-!p6@STAT4!0.62!3.12!STAT4;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.12!OSR1;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.12!FOXC2;;chr4:26322373..26322393,+!p4@RBPJ!0.60!4.68!RBPJ;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.37!FOXF2;;chr17:41622925..41622976,-!p3@ETV4!0.59!4.68!ETV4;;chr14:21566731..21566836,-!p1@ZNF219!0.58!36.83!ZNF219;;chr21:30671690..30671762,+!p2@BACH1!0.58!11.24!BACH1;;chr2:242576431..242576458,-!p3@THAP4!0.58!7.80!THAP4;;chr15:96869255..96869291,+!p6@NR2F2!0.58!5.62!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.58!4.06!NR2F2;;chr2:102091478..102091490,-!p3@RFX8!0.58!2.81!RFX8;;chr2:177016336..177016350,+!p1@HOXD4!0.58!2.81!HOXD4;;chr12:115122303..115122314,-!p6@TBX3!0.58!2.81!TBX3;;chr19:9609272..9609297,-!p1@ZNF560!0.58!2.81!ZNF560;;chr1:119530493..119530572,-!p1@TBX15!0.58!2.81!TBX15;;chr1:170632028..170632043,+!p20@PRRX1!0.58!2.81!PRRX1;;chr5:2751785..2751808,-!p2@IRX2!0.58!2.81!IRX2;;chr11:65687158..65687216,+!p4@DRAP1!0.57!18.73!DRAP1;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.68!TSC22D4;;chr20:39946361..39946379,-!p2@ZHX3!0.55!9.05!ZHX3;;chr15:96874244..96874259,+!p5@NR2F2!0.55!7.18!NR2F2;;chr8:128750555..128750609,+!p5@MYC!0.55!5.93!MYC;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.55!2.81!GLIS1;;chr12:96588143..96588185,+!p1@ELK3!0.54!38.08!ELK3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.54!2.50!POU3F3;;chr2:175199697..175199706,+!p2@SP9!0.54!2.50!SP9;;chr3:21792631..21792665,-!p3@ZNF385D!0.54!2.50!ZNF385D;;chr4:26322673..26322684,+!p11@RBPJ!0.54!2.50!RBPJ;;chr7:44143925..44143970,+!p1@AEBP1!0.53!68.68!AEBP1;;chr1:158979792..158979814,+!p2@IFI16!0.53!29.34!IFI16;;chr5:72744594..72744609,-!p1@FOXD1!0.53!13.42!FOXD1;;chr20:48807456..48807475,+!p3@CEBPB!0.53!5.31!CEBPB;;chr12:10875351..10875422,-!p4@CSDA!0.53!5.31!CSDA;;chr7:113726357..113726443,+!p1@FOXP2!0.53!4.68!FOXP2;;chr3:141121847..141121868,+!p5@ZBTB38!0.53!4.06!ZBTB38;;chr15:96874216..96874236,+!p13@NR2F2!0.52!4.06!NR2F2;;chr20:48807648..48807671,+!p9@CEBPB!0.52!3.75!CEBPB;;chr10:31607702..31607755,+!p3@ZEB1!0.52!2.81!ZEB1;;chr12:96588219..96588263,+!p2@ELK3!0.51!20.91!ELK3;;chr17:61919985..61920012,-!p3@SMARCD2!0.51!6.56!SMARCD2;;chr2:113993052..113993097,-!p2@PAX8!0.51!5.93!PAX8;;chr7:4721870..4721878,+!p2@FOXK1!0.51!3.75!FOXK1;;chr3:178789522..178789564,-!p2@ZMAT3!0.50!20.60!ZMAT3;;chr6:85473156..85473210,-!p2@TBX18!0.50!2.81!TBX18;;chr8:93074848..93074871,-!p3@RUNX1T1!0.50!2.19!RUNX1T1;;chr3:12329464..12329472,+!p6@PPARG!0.50!2.19!PPARG;;chr12:53613935..53613947,-!p8@RARG!0.50!2.19!RARG;;chr1:170632310..170632321,+!p15@PRRX1!0.50!2.19!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.50!2.19!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.50!2.19!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.50!2.19!PRRX1;;chr20:48807351..48807384,+!p1@CEBPB!0.49!289.37!CEBPB;;chr3:37217736..37217753,-!p2@LRRFIP2!0.49!11.24!LRRFIP2;;chr19:42636586..42636607,-!p1@POU2F2!0.49!7.18!POU2F2;;chr10:77161133..77161176,-!p3@ZNF503!0.48!5.31!ZNF503;;chr7:44143978..44143989,+!p2@AEBP1!0.48!4.37!AEBP1;;chr9:16870710..16870763,-!p1@BNC2!0.48!4.06!BNC2;;chr17:41623009..41623053,-!p4@ETV4!0.48!3.75!ETV4;;chr10:31288398..31288455,-!p2@ZNF438!0.48!2.50!ZNF438;;chr5:72743793..72743855,-!p4@FOXD1!0.48!2.50!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.47!3.75!FOXD1;;chr15:96876966..96877017,+!p12@NR2F2!0.47!3.12!NR2F2;;chr1:158985469..158985489,+!p7@IFI16!0.47!2.50!IFI16;;chr11:120107344..120107351,+!p1@POU2F3!0.47!2.50!POU2F3;;chr14:61116183..61116208,-!p1@SIX1!0.46!9.36!SIX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.46!8.74!BHLHE41;;chr20:6748325..6748352,+!p1@BMP2!0.46!3.12!BMP2;;chr9:16870659..16870675,-!p2@BNC2!0.46!2.50!BNC2;;chr15:67418119..67418162,+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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg38.nobarcode.ctss.bed.gz
|id=FF:11269-116G9
|is_a=EFO:0002091;;FF:0000062
|is_obsolete=
|library_id=CNhs12499
|library_id_phase_based=2:CNhs12499
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11269
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.ACAGTG.11269
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11269
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.ACAGTG.11269
|name=Fibroblast - Dermal, donor1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12499,LSID916,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
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|rna_box=116
|rna_catalog_number=CA106-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1378
|rna_od260/230=
|rna_od260/280=
|rna_position=G9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116G9
|rna_weight_ug=10
|rnaseq_library_id=SRhi10002.ACAGTG
|sample_age=71
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=71 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=U
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.51210654244355e-230!GO:0005737;cytoplasm;7.91628602118987e-201!GO:0043231;intracellular membrane-bound organelle;1.28964641388468e-179!GO:0043227;membrane-bound organelle;2.61511379684982e-179!GO:0043226;organelle;2.26760410963576e-178!GO:0043229;intracellular organelle;4.80353758015612e-178!GO:0044444;cytoplasmic part;1.4085725805567e-153!GO:0044422;organelle part;1.55368690707926e-140!GO:0044446;intracellular organelle part;3.78898464134944e-139!GO:0032991;macromolecular complex;1.44067219556448e-98!GO:0030529;ribonucleoprotein complex;5.31534437999463e-94!GO:0044237;cellular metabolic process;1.99989072666103e-88!GO:0044238;primary metabolic process;2.42606212720256e-87!GO:0005739;mitochondrion;1.9041961150896e-86!GO:0043233;organelle lumen;1.05340893137719e-77!GO:0031974;membrane-enclosed lumen;1.05340893137719e-77!GO:0043170;macromolecule metabolic process;5.9402009192627e-75!GO:0003723;RNA binding;1.42359920380465e-69!GO:0044428;nuclear part;1.6049279187451e-67!GO:0005515;protein binding;1.47167614378911e-63!GO:0005840;ribosome;6.8356936777271e-60!GO:0031090;organelle membrane;7.93010397250056e-58!GO:0044429;mitochondrial part;7.44760399098914e-57!GO:0005634;nucleus;2.236317777261e-56!GO:0006412;translation;3.18254414616623e-56!GO:0009058;biosynthetic process;3.92432469317587e-54!GO:0019538;protein metabolic process;2.60396323872782e-53!GO:0003735;structural constituent of ribosome;1.99989275760367e-52!GO:0006396;RNA processing;3.33620884199872e-50!GO:0044249;cellular biosynthetic process;8.20918186776044e-50!GO:0044260;cellular macromolecule metabolic process;4.53220070028284e-48!GO:0043234;protein complex;1.78368493128773e-47!GO:0044267;cellular protein metabolic process;3.17469238106034e-47!GO:0031967;organelle envelope;5.52449039078577e-47!GO:0031975;envelope;1.43185844843662e-46!GO:0033279;ribosomal subunit;6.69728648896973e-46!GO:0009059;macromolecule biosynthetic process;9.85385564180326e-46!GO:0005829;cytosol;2.22665544361624e-44!GO:0031981;nuclear lumen;2.72642656669516e-42!GO:0015031;protein transport;1.0758465101433e-41!GO:0016043;cellular component organization and biogenesis;1.91153660003422e-41!GO:0033036;macromolecule localization;8.90261701416893e-41!GO:0045184;establishment of protein localization;2.35627590336527e-38!GO:0008104;protein localization;1.16146231830507e-37!GO:0005740;mitochondrial envelope;7.14479799601308e-36!GO:0016071;mRNA metabolic process;1.14919626920176e-35!GO:0043283;biopolymer metabolic process;2.58335966416288e-35!GO:0010467;gene expression;2.85122139865849e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.58526190674667e-34!GO:0008380;RNA splicing;1.33314947411394e-33!GO:0031966;mitochondrial membrane;1.47053212940275e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.54597382568459e-33!GO:0046907;intracellular transport;9.27556545500875e-32!GO:0065003;macromolecular complex assembly;1.36210647906123e-31!GO:0019866;organelle inner membrane;4.30021080963923e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.21060739810544e-30!GO:0006397;mRNA processing;1.9157322057153e-30!GO:0005743;mitochondrial inner membrane;8.57220293164495e-30!GO:0022607;cellular component assembly;2.930521388606e-28!GO:0006996;organelle organization and biogenesis;1.38624975293128e-27!GO:0006886;intracellular protein transport;1.38862886682246e-27!GO:0044445;cytosolic part;1.33727390098045e-26!GO:0043228;non-membrane-bound organelle;4.20102117273223e-26!GO:0043232;intracellular non-membrane-bound organelle;4.20102117273223e-26!GO:0031980;mitochondrial lumen;5.28004979984683e-25!GO:0005759;mitochondrial matrix;5.28004979984683e-25!GO:0005654;nucleoplasm;7.87250355281364e-25!GO:0006119;oxidative phosphorylation;2.21954433263891e-24!GO:0015934;large ribosomal subunit;6.12344186325098e-24!GO:0044455;mitochondrial membrane part;1.86104328806136e-23!GO:0005681;spliceosome;2.1334433509174e-23!GO:0015935;small ribosomal subunit;5.16147223331777e-23!GO:0012505;endomembrane system;5.79088014887146e-23!GO:0006457;protein folding;5.21835683372159e-21!GO:0051186;cofactor metabolic process;1.72250971074187e-20!GO:0005783;endoplasmic reticulum;2.60764051246695e-20!GO:0006259;DNA metabolic process;3.08284555831452e-20!GO:0044451;nucleoplasm part;3.2822645032458e-20!GO:0000166;nucleotide binding;4.99409327240613e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.82572690202256e-20!GO:0016462;pyrophosphatase activity;1.06399601816706e-19!GO:0005730;nucleolus;1.33838562156441e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.53803708191426e-19!GO:0051649;establishment of cellular localization;1.90231550076374e-19!GO:0051641;cellular localization;1.97994980306769e-19!GO:0005746;mitochondrial respiratory chain;2.06904961662337e-19!GO:0022618;protein-RNA complex assembly;3.09663878882824e-19!GO:0048770;pigment granule;7.01079272789404e-19!GO:0042470;melanosome;7.01079272789404e-19!GO:0017111;nucleoside-triphosphatase activity;9.33148756620957e-19!GO:0044432;endoplasmic reticulum part;6.42648900114573e-18!GO:0016874;ligase activity;1.05485008701351e-17!GO:0043285;biopolymer catabolic process;1.5940730241179e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.01161129750636e-17!GO:0044248;cellular catabolic process;5.7810586249821e-17!GO:0044265;cellular macromolecule catabolic process;5.7810586249821e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.34462171116678e-17!GO:0008135;translation factor activity, nucleic acid binding;8.020617775365e-17!GO:0005761;mitochondrial ribosome;8.87405050346734e-17!GO:0000313;organellar ribosome;8.87405050346734e-17!GO:0009057;macromolecule catabolic process;1.32312194712611e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.80342884556709e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.0925915456005e-16!GO:0003954;NADH dehydrogenase activity;2.0925915456005e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.0925915456005e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.37917115946678e-16!GO:0003676;nucleic acid binding;3.48380907721547e-16!GO:0042254;ribosome biogenesis and assembly;4.93683051310791e-16!GO:0005794;Golgi apparatus;7.43328983616391e-16!GO:0006732;coenzyme metabolic process;1.03566354213942e-15!GO:0006512;ubiquitin cycle;1.36535484658483e-15!GO:0006605;protein targeting;5.85270694055121e-15!GO:0042775;organelle ATP synthesis coupled electron transport;7.75901112610028e-15!GO:0042773;ATP synthesis coupled electron transport;7.75901112610028e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.23471502462069e-14!GO:0045271;respiratory chain complex I;1.23471502462069e-14!GO:0005747;mitochondrial respiratory chain complex I;1.23471502462069e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.23471502462069e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.58332420265501e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.98780867223415e-14!GO:0019941;modification-dependent protein catabolic process;2.36418208327279e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.36418208327279e-14!GO:0044257;cellular protein catabolic process;2.56425834405267e-14!GO:0008134;transcription factor binding;3.15809897396212e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.66464569673872e-14!GO:0017076;purine nucleotide binding;4.71546405580658e-14!GO:0030163;protein catabolic process;5.62661472056049e-14!GO:0051082;unfolded protein binding;6.74693071855753e-14!GO:0003743;translation initiation factor activity;1.37517326652669e-13!GO:0032553;ribonucleotide binding;2.80026599863453e-13!GO:0032555;purine ribonucleotide binding;2.80026599863453e-13!GO:0007049;cell cycle;3.06999087806077e-13!GO:0006399;tRNA metabolic process;3.96457902934653e-13!GO:0006413;translational initiation;4.96267491503436e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.53913738232713e-13!GO:0048193;Golgi vesicle transport;5.67593245531405e-13!GO:0016070;RNA metabolic process;1.30887945031844e-12!GO:0005793;ER-Golgi intermediate compartment;1.39283533749493e-12!GO:0005789;endoplasmic reticulum membrane;1.54831600861978e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.58145408365832e-12!GO:0000375;RNA splicing, via transesterification reactions;1.58145408365832e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.58145408365832e-12!GO:0005635;nuclear envelope;2.04315219993702e-12!GO:0009259;ribonucleotide metabolic process;3.11808392502924e-12!GO:0009055;electron carrier activity;3.91123946747638e-12!GO:0006163;purine nucleotide metabolic process;5.50515523055984e-12!GO:0043412;biopolymer modification;5.64540460483899e-12!GO:0016192;vesicle-mediated transport;1.03521849789425e-11!GO:0031965;nuclear membrane;1.51495367856104e-11!GO:0030554;adenyl nucleotide binding;1.7899286354067e-11!GO:0009150;purine ribonucleotide metabolic process;1.91248855030187e-11!GO:0016491;oxidoreductase activity;3.47408678787157e-11!GO:0006974;response to DNA damage stimulus;3.65200572124214e-11!GO:0006446;regulation of translational initiation;4.92929536037644e-11!GO:0005524;ATP binding;4.98328039786255e-11!GO:0006164;purine nucleotide biosynthetic process;5.0370682986084e-11!GO:0009056;catabolic process;5.17118306024895e-11!GO:0009260;ribonucleotide biosynthetic process;7.47128785914895e-11!GO:0032559;adenyl ribonucleotide binding;7.4853955988536e-11!GO:0044453;nuclear membrane part;1.26032344679706e-10!GO:0006364;rRNA processing;1.32064973550408e-10!GO:0016604;nuclear body;1.41421560174805e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.70324953773254e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.98075107151611e-10!GO:0051188;cofactor biosynthetic process;2.03481104169386e-10!GO:0016072;rRNA metabolic process;2.34932424421784e-10!GO:0006464;protein modification process;3.15822688941575e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.45309220560163e-10!GO:0016887;ATPase activity;4.00633371624088e-10!GO:0009199;ribonucleoside triphosphate metabolic process;4.26010406869328e-10!GO:0022402;cell cycle process;4.4290166642873e-10!GO:0009141;nucleoside triphosphate metabolic process;4.92017625528075e-10!GO:0042623;ATPase activity, coupled;5.11690733677797e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.42842624362145e-10!GO:0009144;purine nucleoside triphosphate metabolic process;7.42842624362145e-10!GO:0006461;protein complex assembly;1.38179456656269e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.43156167926631e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.79034336624877e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.79034336624877e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.79034336624877e-09!GO:0000278;mitotic cell cycle;2.66641579892998e-09!GO:0009060;aerobic respiration;2.7104702922896e-09!GO:0006913;nucleocytoplasmic transport;2.81698174311664e-09!GO:0043038;amino acid activation;3.09962149928576e-09!GO:0006418;tRNA aminoacylation for protein translation;3.09962149928576e-09!GO:0043039;tRNA aminoacylation;3.09962149928576e-09!GO:0045333;cellular respiration;3.25711826268498e-09!GO:0008565;protein transporter activity;3.95391511499506e-09!GO:0015078;hydrogen ion transmembrane transporter activity;4.64537230362385e-09!GO:0012501;programmed cell death;5.00552342746577e-09!GO:0009117;nucleotide metabolic process;5.02395062243862e-09!GO:0065002;intracellular protein transport across a membrane;5.15135122008398e-09!GO:0006281;DNA repair;5.80505372598264e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.83234499867376e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.83234499867376e-09!GO:0051169;nuclear transport;5.89254879843388e-09!GO:0003712;transcription cofactor activity;6.43754394332343e-09!GO:0005643;nuclear pore;6.87730008665435e-09!GO:0008639;small protein conjugating enzyme activity;7.30791913255289e-09!GO:0046034;ATP metabolic process;7.39338764560485e-09!GO:0015986;ATP synthesis coupled proton transport;7.79533691939911e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.79533691939911e-09!GO:0006915;apoptosis;7.8275424448153e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.00836977125767e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.00836977125767e-08!GO:0006091;generation of precursor metabolites and energy;1.32197670880077e-08!GO:0004842;ubiquitin-protein ligase activity;1.7435082292452e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.82441203851041e-08!GO:0007005;mitochondrion organization and biogenesis;1.99931857362459e-08!GO:0017038;protein import;2.2707269745121e-08!GO:0019829;cation-transporting ATPase activity;2.33746562164516e-08!GO:0005768;endosome;4.16667600924051e-08!GO:0043687;post-translational protein modification;4.2839327818955e-08!GO:0019787;small conjugating protein ligase activity;4.34439245740374e-08!GO:0009108;coenzyme biosynthetic process;4.51216526375983e-08!GO:0009719;response to endogenous stimulus;4.72344714580725e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.33571433956347e-08!GO:0008219;cell death;5.45415517104108e-08!GO:0016265;death;5.45415517104108e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.87251568926642e-08!GO:0030120;vesicle coat;5.94301724106341e-08!GO:0030662;coated vesicle membrane;5.94301724106341e-08!GO:0016607;nuclear speck;6.97175094084873e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;7.77803621530842e-08!GO:0008026;ATP-dependent helicase activity;8.20639938030825e-08!GO:0006754;ATP biosynthetic process;9.21845348934513e-08!GO:0006753;nucleoside phosphate metabolic process;9.21845348934513e-08!GO:0046930;pore complex;9.21845348934513e-08!GO:0004386;helicase activity;9.95727996193678e-08!GO:0005788;endoplasmic reticulum lumen;9.99577399757585e-08!GO:0044431;Golgi apparatus part;1.16449026288009e-07!GO:0051276;chromosome organization and biogenesis;1.18933182643462e-07!GO:0006099;tricarboxylic acid cycle;1.39689623782309e-07!GO:0046356;acetyl-CoA catabolic process;1.39689623782309e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.94352124244012e-07!GO:0016787;hydrolase activity;2.10400777441607e-07!GO:0006323;DNA packaging;2.37824819991613e-07!GO:0006260;DNA replication;2.44453462915424e-07!GO:0006084;acetyl-CoA metabolic process;2.54760504445167e-07!GO:0051187;cofactor catabolic process;3.29913032381702e-07!GO:0016881;acid-amino acid ligase activity;3.54321357965694e-07!GO:0050657;nucleic acid transport;3.84337866094804e-07!GO:0051236;establishment of RNA localization;3.84337866094804e-07!GO:0050658;RNA transport;3.84337866094804e-07!GO:0006403;RNA localization;3.88952941523493e-07!GO:0016740;transferase activity;4.09098539782616e-07!GO:0065004;protein-DNA complex assembly;4.26041802504797e-07!GO:0005694;chromosome;4.31655252521861e-07!GO:0003924;GTPase activity;4.79422230615946e-07!GO:0051246;regulation of protein metabolic process;4.89482815792302e-07!GO:0009109;coenzyme catabolic process;5.23568891248629e-07!GO:0000074;regulation of progression through cell cycle;5.37589915481664e-07!GO:0051726;regulation of cell cycle;5.55693253247716e-07!GO:0048475;coated membrane;5.58862569844821e-07!GO:0030117;membrane coat;5.58862569844821e-07!GO:0043566;structure-specific DNA binding;5.72860805623293e-07!GO:0016853;isomerase activity;5.91586554361721e-07!GO:0045259;proton-transporting ATP synthase complex;6.07309189518748e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.95351816104859e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.40439670864669e-07!GO:0044440;endosomal part;8.4726630676986e-07!GO:0010008;endosome membrane;8.4726630676986e-07!GO:0006752;group transfer coenzyme metabolic process;9.17559525241234e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.32380252089226e-07!GO:0005762;mitochondrial large ribosomal subunit;1.13506800647258e-06!GO:0000315;organellar large ribosomal subunit;1.13506800647258e-06!GO:0048523;negative regulation of cellular process;1.30335649467148e-06!GO:0003697;single-stranded DNA binding;1.57414439369681e-06!GO:0005770;late endosome;1.7985566766359e-06!GO:0000087;M phase of mitotic cell cycle;2.06113858239781e-06!GO:0008654;phospholipid biosynthetic process;2.53130380973221e-06!GO:0007067;mitosis;2.81833504283172e-06!GO:0005773;vacuole;3.03918768638145e-06!GO:0006366;transcription from RNA polymerase II promoter;3.28715280265803e-06!GO:0000139;Golgi membrane;3.28837348311569e-06!GO:0044427;chromosomal part;3.58968079111197e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.9822248359048e-06!GO:0016779;nucleotidyltransferase activity;3.9822248359048e-06!GO:0005667;transcription factor complex;4.72183322863979e-06!GO:0019867;outer membrane;5.31868824778458e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.41718754326112e-06!GO:0031968;organelle outer membrane;5.5359489802219e-06!GO:0022403;cell cycle phase;5.5977510287932e-06!GO:0006916;anti-apoptosis;5.5977510287932e-06!GO:0004298;threonine endopeptidase activity;7.60945605690897e-06!GO:0032446;protein modification by small protein conjugation;8.92683121588666e-06!GO:0051028;mRNA transport;1.00327640389501e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.01381437659519e-05!GO:0031988;membrane-bound vesicle;1.04028047194988e-05!GO:0000245;spliceosome assembly;1.04936108383045e-05!GO:0016567;protein ubiquitination;1.05093566773209e-05!GO:0006333;chromatin assembly or disassembly;1.1471768762202e-05!GO:0042981;regulation of apoptosis;1.48741290835074e-05!GO:0009165;nucleotide biosynthetic process;1.64945489841336e-05!GO:0000151;ubiquitin ligase complex;1.73460800169799e-05!GO:0043623;cellular protein complex assembly;1.75666213578626e-05!GO:0043067;regulation of programmed cell death;1.79673171301162e-05!GO:0051170;nuclear import;1.93138194917463e-05!GO:0008610;lipid biosynthetic process;1.93138194917463e-05!GO:0019843;rRNA binding;1.97391039139051e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.25167184516133e-05!GO:0005798;Golgi-associated vesicle;2.29902695453409e-05!GO:0006613;cotranslational protein targeting to membrane;2.34435824411842e-05!GO:0045454;cell redox homeostasis;2.34435824411842e-05!GO:0031982;vesicle;2.39150566960808e-05!GO:0048519;negative regulation of biological process;2.48873840801765e-05!GO:0003713;transcription coactivator activity;2.51702104243508e-05!GO:0005741;mitochondrial outer membrane;2.56029035033367e-05!GO:0016859;cis-trans isomerase activity;2.5752700008136e-05!GO:0000785;chromatin;2.59997158592112e-05!GO:0019752;carboxylic acid metabolic process;2.62345827640527e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.7184217378821e-05!GO:0031410;cytoplasmic vesicle;2.75766852705301e-05!GO:0031252;leading edge;2.76732104644942e-05!GO:0006082;organic acid metabolic process;2.93718724450569e-05!GO:0000323;lytic vacuole;3.13319920477078e-05!GO:0005764;lysosome;3.13319920477078e-05!GO:0005525;GTP binding;3.13366367110499e-05!GO:0008033;tRNA processing;3.38372815651422e-05!GO:0006606;protein import into nucleus;3.45606754880143e-05!GO:0000314;organellar small ribosomal subunit;3.5034705588253e-05!GO:0005763;mitochondrial small ribosomal subunit;3.5034705588253e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.96311923929318e-05!GO:0016126;sterol biosynthetic process;4.11815824227842e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.49862375997062e-05!GO:0003724;RNA helicase activity;4.52238474165419e-05!GO:0003899;DNA-directed RNA polymerase activity;4.67817688793828e-05!GO:0005048;signal sequence binding;4.80800875155821e-05!GO:0043069;negative regulation of programmed cell death;5.15680049411791e-05!GO:0043021;ribonucleoprotein binding;5.23533668047311e-05!GO:0043066;negative regulation of apoptosis;6.05908196069669e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.22290973521078e-05!GO:0051301;cell division;6.47837516580793e-05!GO:0051427;hormone receptor binding;7.34349439808954e-05!GO:0016568;chromatin modification;7.48756019379476e-05!GO:0030867;rough endoplasmic reticulum membrane;7.93980329849671e-05!GO:0005769;early endosome;9.31481312615144e-05!GO:0031324;negative regulation of cellular metabolic process;9.48518431137188e-05!GO:0016564;transcription repressor activity;9.63592265605366e-05!GO:0006793;phosphorus metabolic process;0.000106838662223944!GO:0006796;phosphate metabolic process;0.000106838662223944!GO:0019899;enzyme binding;0.000109012476753645!GO:0006626;protein targeting to mitochondrion;0.00011297445680188!GO:0033116;ER-Golgi intermediate compartment membrane;0.000122866130008096!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000129119064896974!GO:0046474;glycerophospholipid biosynthetic process;0.000129119064896974!GO:0050662;coenzyme binding;0.000145297699028653!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000146323691395082!GO:0035257;nuclear hormone receptor binding;0.0001489813731243!GO:0016563;transcription activator activity;0.000150740719908965!GO:0044452;nucleolar part;0.000151715540147595!GO:0006334;nucleosome assembly;0.000152045402370909!GO:0032561;guanyl ribonucleotide binding;0.000198976353903135!GO:0019001;guanyl nucleotide binding;0.000198976353903135!GO:0044262;cellular carbohydrate metabolic process;0.000208158702974376!GO:0000279;M phase;0.000238917528252851!GO:0031497;chromatin assembly;0.000242124685828986!GO:0016310;phosphorylation;0.000244195191717606!GO:0045786;negative regulation of progression through cell cycle;0.000249109402503064!GO:0005791;rough endoplasmic reticulum;0.000251036285440755!GO:0030133;transport vesicle;0.000251878424798003!GO:0005905;coated pit;0.000269574546942891!GO:0043681;protein import into mitochondrion;0.000278703799646716!GO:0005885;Arp2/3 protein complex;0.00028549137748173!GO:0005813;centrosome;0.000286485774619848!GO:0050794;regulation of cellular process;0.000308035527203594!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000315054686577052!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000322059769831522!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000372524676944985!GO:0015630;microtubule cytoskeleton;0.000390019476825797!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000395726190590213!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000397553817966342!GO:0006695;cholesterol biosynthetic process;0.000436492725747002!GO:0008250;oligosaccharyl transferase complex;0.000471532016029149!GO:0006383;transcription from RNA polymerase III promoter;0.00050068750630378!GO:0003714;transcription corepressor activity;0.00050510665858434!GO:0007006;mitochondrial membrane organization and biogenesis;0.000512581895348089!GO:0005815;microtubule organizing center;0.000512581895348089!GO:0043284;biopolymer biosynthetic process;0.000534902735154879!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000553305219868753!GO:0015399;primary active transmembrane transporter activity;0.000553305219868753!GO:0004576;oligosaccharyl transferase activity;0.000561048249052453!GO:0046467;membrane lipid biosynthetic process;0.000562474976561741!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000603454065866261!GO:0030880;RNA polymerase complex;0.000609465510295462!GO:0051252;regulation of RNA metabolic process;0.000612635738274778!GO:0030663;COPI coated vesicle membrane;0.000629177298358535!GO:0030126;COPI vesicle coat;0.000629177298358535!GO:0006118;electron transport;0.000650313034688492!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000663962952011547!GO:0004177;aminopeptidase activity;0.000664265850525558!GO:0006612;protein targeting to membrane;0.000691469235979983!GO:0000059;protein import into nucleus, docking;0.000760957329943046!GO:0006839;mitochondrial transport;0.000760957329943046!GO:0009892;negative regulation of metabolic process;0.000787098479265138!GO:0051920;peroxiredoxin activity;0.000792755301799043!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000834409927399247!GO:0043488;regulation of mRNA stability;0.000860504556136932!GO:0043487;regulation of RNA stability;0.000860504556136932!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000860504556136932!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000860504556136932!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000860504556136932!GO:0003729;mRNA binding;0.000874748963261332!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000900751585640229!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00090998844280663!GO:0008168;methyltransferase activity;0.000917477939531367!GO:0006414;translational elongation;0.000917571855256155!GO:0006401;RNA catabolic process;0.00095136517915425!GO:0008186;RNA-dependent ATPase activity;0.00096283523310011!GO:0046483;heterocycle metabolic process;0.000963146796421947!GO:0030036;actin cytoskeleton organization and biogenesis;0.000978329439160586!GO:0016741;transferase activity, transferring one-carbon groups;0.000995395860703177!GO:0042802;identical protein binding;0.00101826762834546!GO:0022890;inorganic cation transmembrane transporter activity;0.0010453606778922!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00109543675016907!GO:0015002;heme-copper terminal oxidase activity;0.00109543675016907!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00109543675016907!GO:0004129;cytochrome-c oxidase activity;0.00109543675016907!GO:0006520;amino acid metabolic process;0.00111710396756059!GO:0051789;response to protein stimulus;0.00116763205914166!GO:0006986;response to unfolded protein;0.00116763205914166!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00129168887610705!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00146803344968511!GO:0000428;DNA-directed RNA polymerase complex;0.00146803344968511!GO:0018196;peptidyl-asparagine modification;0.0014874192746382!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0014874192746382!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0014874192746382!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0014874192746382!GO:0051287;NAD binding;0.00151493147929921!GO:0016481;negative regulation of transcription;0.00151493147929921!GO:0051329;interphase of mitotic cell cycle;0.00153910685882156!GO:0048037;cofactor binding;0.00156710516506585!GO:0008361;regulation of cell size;0.0016555792741995!GO:0008632;apoptotic program;0.00167994579760241!GO:0030137;COPI-coated vesicle;0.00176224791472915!GO:0016044;membrane organization and biogenesis;0.00179988738087372!GO:0006402;mRNA catabolic process;0.0018818999613187!GO:0000049;tRNA binding;0.00192708933788289!GO:0006261;DNA-dependent DNA replication;0.00193669182615118!GO:0046489;phosphoinositide biosynthetic process;0.00202791765224334!GO:0003690;double-stranded DNA binding;0.00221578410063575!GO:0051540;metal cluster binding;0.002259194685251!GO:0051536;iron-sulfur cluster binding;0.002259194685251!GO:0004004;ATP-dependent RNA helicase activity;0.00240917415729056!GO:0016049;cell growth;0.00241046269891675!GO:0031072;heat shock protein binding;0.00254899987017124!GO:0006891;intra-Golgi vesicle-mediated transport;0.00257803536141566!GO:0051087;chaperone binding;0.0027393025493298!GO:0008180;signalosome;0.00275759598375607!GO:0001558;regulation of cell growth;0.0027769216047667!GO:0051168;nuclear export;0.0027769216047667!GO:0048500;signal recognition particle;0.00282800996266334!GO:0015992;proton transport;0.00303752828092956!GO:0006352;transcription initiation;0.00328293795905406!GO:0030658;transport vesicle membrane;0.00328293795905406!GO:0006818;hydrogen transport;0.00334492053058646!GO:0006740;NADPH regeneration;0.0035831161650069!GO:0006098;pentose-phosphate shunt;0.0035831161650069!GO:0030132;clathrin coat of coated pit;0.00362671409121005!GO:0006778;porphyrin metabolic process;0.00373189278520018!GO:0033013;tetrapyrrole metabolic process;0.00373189278520018!GO:0006595;polyamine metabolic process;0.00374119905100623!GO:0051539;4 iron, 4 sulfur cluster binding;0.00387211011970072!GO:0043492;ATPase activity, coupled to movement of substances;0.00393219938279976!GO:0003684;damaged DNA binding;0.00417703392349711!GO:0016407;acetyltransferase activity;0.00426517649896555!GO:0030029;actin filament-based process;0.00457428771197658!GO:0031902;late endosome membrane;0.00468098155247709!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00472304483793473!GO:0035258;steroid hormone receptor binding;0.00474950462131348!GO:0051325;interphase;0.00476861958779317!GO:0008312;7S RNA binding;0.00506928559688259!GO:0005684;U2-dependent spliceosome;0.00521533509954216!GO:0030134;ER to Golgi transport vesicle;0.0052884301763566!GO:0048522;positive regulation of cellular process;0.0052884301763566!GO:0007010;cytoskeleton organization and biogenesis;0.00532108942673638!GO:0030127;COPII vesicle coat;0.00552942962734301!GO:0012507;ER to Golgi transport vesicle membrane;0.00552942962734301!GO:0006289;nucleotide-excision repair;0.00559013801367078!GO:0007243;protein kinase cascade;0.00560152818811192!GO:0008139;nuclear localization sequence binding;0.00581446947477052!GO:0007033;vacuole organization and biogenesis;0.00598557566623502!GO:0022408;negative regulation of cell-cell adhesion;0.00622577769065837!GO:0065009;regulation of a molecular function;0.00641799085439722!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00643478294017266!GO:0045047;protein targeting to ER;0.00643478294017266!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00652483083871694!GO:0006807;nitrogen compound metabolic process;0.00663375758227867!GO:0048487;beta-tubulin binding;0.00666505061594788!GO:0009451;RNA modification;0.00666505061594788!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00666505061594788!GO:0004527;exonuclease activity;0.00680785211623319!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00688160538416714!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0070485270200931!GO:0006733;oxidoreduction coenzyme metabolic process;0.00707768567965187!GO:0016197;endosome transport;0.00722590472678819!GO:0017166;vinculin binding;0.00723440553891516!GO:0030041;actin filament polymerization;0.00733207837056223!GO:0006979;response to oxidative stress;0.007399255026289!GO:0007040;lysosome organization and biogenesis;0.00763984859484911!GO:0006650;glycerophospholipid metabolic process;0.00763984859484911!GO:0043022;ribosome binding;0.00776466963713675!GO:0006779;porphyrin biosynthetic process;0.00776466963713675!GO:0033014;tetrapyrrole biosynthetic process;0.00776466963713675!GO:0016272;prefoldin complex;0.0079263874049119!GO:0016408;C-acyltransferase activity;0.00800297268546548!GO:0009308;amine metabolic process;0.00808530751328404!GO:0004518;nuclease activity;0.00815850296684918!GO:0030145;manganese ion binding;0.00815850296684918!GO:0030660;Golgi-associated vesicle membrane;0.00835662998745171!GO:0030176;integral to endoplasmic reticulum membrane;0.0084637476155087!GO:0030118;clathrin coat;0.00862829141424585!GO:0009112;nucleobase metabolic process;0.00866265279220796!GO:0008047;enzyme activator activity;0.0087174521246907!GO:0030027;lamellipodium;0.00890483574343367!GO:0003711;transcription elongation regulator activity;0.0092992814373667!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0093825468183213!GO:0000082;G1/S transition of mitotic cell cycle;0.00941353182408067!GO:0001953;negative regulation of cell-matrix adhesion;0.00942300607325269!GO:0003746;translation elongation factor activity;0.00943322788969116!GO:0016363;nuclear matrix;0.00946239400245751!GO:0000339;RNA cap binding;0.00965716557263816!GO:0005869;dynactin complex;0.0099530453899184!GO:0030521;androgen receptor signaling pathway;0.0100261945943209!GO:0008652;amino acid biosynthetic process;0.0103885278121398!GO:0030032;lamellipodium biogenesis;0.0106717569557372!GO:0033673;negative regulation of kinase activity;0.0109023916272702!GO:0006469;negative regulation of protein kinase activity;0.0109023916272702!GO:0005096;GTPase activator activity;0.0109148022619967!GO:0005758;mitochondrial intermembrane space;0.0109299442504609!GO:0031901;early endosome membrane;0.0109380778773434!GO:0007034;vacuolar transport;0.0110999275736178!GO:0016251;general RNA polymerase II transcription factor activity;0.0111005628157845!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0113465108040564!GO:0005832;chaperonin-containing T-complex;0.0114092209003804!GO:0006144;purine base metabolic process;0.0114168150528263!GO:0005819;spindle;0.0117880407613429!GO:0009116;nucleoside metabolic process;0.0117916282072785!GO:0000096;sulfur amino acid metabolic process;0.0118141400248511!GO:0007050;cell cycle arrest;0.0118345976318768!GO:0006497;protein amino acid lipidation;0.0119829295237519!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0119829295237519!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0119829295237519!GO:0005774;vacuolar membrane;0.0120876711737838!GO:0051348;negative regulation of transferase activity;0.0121038336796156!GO:0042168;heme metabolic process;0.0121415563545512!GO:0031625;ubiquitin protein ligase binding;0.0121850747484327!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0125939826945172!GO:0042158;lipoprotein biosynthetic process;0.0126884117315034!GO:0006007;glucose catabolic process;0.012760105144184!GO:0016125;sterol metabolic process;0.0130083893163756!GO:0003678;DNA helicase activity;0.0135344628402175!GO:0031529;ruffle organization and biogenesis;0.0137468455493957!GO:0031970;organelle envelope lumen;0.0138072583208623!GO:0007264;small GTPase mediated signal transduction;0.0138432242008443!GO:0001726;ruffle;0.0139164578606171!GO:0048471;perinuclear region of cytoplasm;0.014434368490294!GO:0050789;regulation of biological process;0.0146596782345052!GO:0016860;intramolecular oxidoreductase activity;0.0146596782345052!GO:0009303;rRNA transcription;0.0149473233192341!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.015188269813107!GO:0030984;kininogen binding;0.0152672902857644!GO:0004213;cathepsin B activity;0.0152672902857644!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.015368387591095!GO:0007021;tubulin folding;0.0156798418705198!GO:0006302;double-strand break repair;0.0157885970305906!GO:0000075;cell cycle checkpoint;0.0158279032365611!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0176814691538934!GO:0051537;2 iron, 2 sulfur cluster binding;0.0178162449904842!GO:0006739;NADP metabolic process;0.0180499572736265!GO:0006506;GPI anchor biosynthetic process;0.018125075435379!GO:0006519;amino acid and derivative metabolic process;0.018125075435379!GO:0008243;plasminogen activator activity;0.0182921333473254!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0183337902649806!GO:0048144;fibroblast proliferation;0.0183364672946987!GO:0048145;regulation of fibroblast proliferation;0.0183364672946987!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0184198292538029!GO:0031124;mRNA 3'-end processing;0.0185359135030822!GO:0030125;clathrin vesicle coat;0.0187240776001942!GO:0030665;clathrin coated vesicle membrane;0.0187240776001942!GO:0030833;regulation of actin filament polymerization;0.0190934000605352!GO:0006611;protein export from nucleus;0.0192214037852992!GO:0006769;nicotinamide metabolic process;0.0196661499570332!GO:0030031;cell projection biogenesis;0.0196661499570332!GO:0030518;steroid hormone receptor signaling pathway;0.0199594395070904!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0203147867626057!GO:0006767;water-soluble vitamin metabolic process;0.0205686885969386!GO:0050681;androgen receptor binding;0.0205686885969386!GO:0032984;macromolecular complex disassembly;0.0206543197287975!GO:0045941;positive regulation of transcription;0.0213961830666774!GO:0009081;branched chain family amino acid metabolic process;0.0214281051537104!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0215153838959675!GO:0035035;histone acetyltransferase binding;0.0216432494637107!GO:0008154;actin polymerization and/or depolymerization;0.0217366530304477!GO:0015036;disulfide oxidoreductase activity;0.0219463826275507!GO:0006505;GPI anchor metabolic process;0.0224624377786744!GO:0032508;DNA duplex unwinding;0.0224827618593639!GO:0032392;DNA geometric change;0.0224827618593639!GO:0005100;Rho GTPase activator activity;0.0233289660315764!GO:0006509;membrane protein ectodomain proteolysis;0.0234242621946971!GO:0033619;membrane protein proteolysis;0.0234242621946971!GO:0009967;positive regulation of signal transduction;0.0234242621946971!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0235140465730353!GO:0001952;regulation of cell-matrix adhesion;0.0236088086962402!GO:0006220;pyrimidine nucleotide metabolic process;0.0238498825318021!GO:0030659;cytoplasmic vesicle membrane;0.0239123097567597!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0240517170970486!GO:0006066;alcohol metabolic process;0.0242127714236732!GO:0033559;unsaturated fatty acid metabolic process;0.0242169551206739!GO:0006636;unsaturated fatty acid biosynthetic process;0.0242169551206739!GO:0048146;positive regulation of fibroblast proliferation;0.0245342084854685!GO:0044437;vacuolar part;0.0250958383185554!GO:0000209;protein polyubiquitination;0.02545285129614!GO:0044255;cellular lipid metabolic process;0.0254734371226113!GO:0006783;heme biosynthetic process;0.0255410098324349!GO:0005777;peroxisome;0.0256228610364462!GO:0042579;microbody;0.0256228610364462!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0256650020611513!GO:0043189;H4/H2A histone acetyltransferase complex;0.0258828313041034!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0258828313041034!GO:0010257;NADH dehydrogenase complex assembly;0.0258828313041034!GO:0033108;mitochondrial respiratory chain complex assembly;0.0258828313041034!GO:0015631;tubulin binding;0.0261684361774155!GO:0051128;regulation of cellular component organization and biogenesis;0.0262032849660675!GO:0051052;regulation of DNA metabolic process;0.0265033782391983!GO:0000178;exosome (RNase complex);0.0265033782391983!GO:0005669;transcription factor TFIID complex;0.0265461930077644!GO:0030508;thiol-disulfide exchange intermediate activity;0.0265501901551779!GO:0008538;proteasome activator activity;0.0265501901551779!GO:0008637;apoptotic mitochondrial changes;0.0266933390139412!GO:0006950;response to stress;0.026748005747995!GO:0005862;muscle thin filament tropomyosin;0.0268035772192908!GO:0050178;phenylpyruvate tautomerase activity;0.0269500685206922!GO:0004532;exoribonuclease activity;0.0269500685206922!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0269500685206922!GO:0000786;nucleosome;0.027185546981031!GO:0045045;secretory pathway;0.0280071134461228!GO:0000287;magnesium ion binding;0.0282825571640986!GO:0040008;regulation of growth;0.0290158343309744!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0290158343309744!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0290158343309744!GO:0030119;AP-type membrane coat adaptor complex;0.0290993988334077!GO:0045893;positive regulation of transcription, DNA-dependent;0.029656852467343!GO:0035267;NuA4 histone acetyltransferase complex;0.029903092188321!GO:0008408;3'-5' exonuclease activity;0.029903092188321!GO:0005637;nuclear inner membrane;0.0303017095688863!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0304798568210111!GO:0003756;protein disulfide isomerase activity;0.030520495528196!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.030520495528196!GO:0008092;cytoskeletal protein binding;0.0305464288955791!GO:0007041;lysosomal transport;0.0309628004659467!GO:0043241;protein complex disassembly;0.0312259764933497!GO:0008415;acyltransferase activity;0.0316787808781372!GO:0044438;microbody part;0.0316787808781372!GO:0044439;peroxisomal part;0.0316787808781372!GO:0031272;regulation of pseudopodium formation;0.0316787808781372!GO:0031269;pseudopodium formation;0.0316787808781372!GO:0031344;regulation of cell projection organization and biogenesis;0.0316787808781372!GO:0031268;pseudopodium organization and biogenesis;0.0316787808781372!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0316787808781372!GO:0031274;positive regulation of pseudopodium formation;0.0316787808781372!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0322098964405522!GO:0004722;protein serine/threonine phosphatase activity;0.032493421604177!GO:0046128;purine ribonucleoside metabolic process;0.032493421604177!GO:0042278;purine nucleoside metabolic process;0.032493421604177!GO:0043624;cellular protein complex disassembly;0.032680071564456!GO:0008299;isoprenoid biosynthetic process;0.0331878520417169!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0333252475541184!GO:0033043;regulation of organelle organization and biogenesis;0.0333252475541184!GO:0009124;nucleoside monophosphate biosynthetic process;0.034321494771231!GO:0009123;nucleoside monophosphate metabolic process;0.034321494771231!GO:0006308;DNA catabolic process;0.034321494771231!GO:0005765;lysosomal membrane;0.0343767402726885!GO:0016746;transferase activity, transferring acyl groups;0.0343801106476969!GO:0031371;ubiquitin conjugating enzyme complex;0.0344392023134273!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0344566950858316!GO:0044433;cytoplasmic vesicle part;0.0345536703470387!GO:0006405;RNA export from nucleus;0.0348378164431956!GO:0008022;protein C-terminus binding;0.0350273723730042!GO:0045892;negative regulation of transcription, DNA-dependent;0.0353982177543332!GO:0030911;TPR domain binding;0.0361390407871069!GO:0022411;cellular component disassembly;0.0362347593199242!GO:0046519;sphingoid metabolic process;0.0363508544081774!GO:0000030;mannosyltransferase activity;0.0366186918885864!GO:0006268;DNA unwinding during replication;0.0367111496534927!GO:0050790;regulation of catalytic activity;0.0367612677278985!GO:0006596;polyamine biosynthetic process;0.0368219838358985!GO:0006354;RNA elongation;0.0369064160145916!GO:0006635;fatty acid beta-oxidation;0.0369064160145916!GO:0006378;mRNA polyadenylation;0.0370670884552296!GO:0007051;spindle organization and biogenesis;0.0373315802466728!GO:0019206;nucleoside kinase activity;0.0378644401310892!GO:0050811;GABA receptor binding;0.0378723074554095!GO:0006417;regulation of translation;0.0381704930032233!GO:0007162;negative regulation of cell adhesion;0.0383245909614453!GO:0043414;biopolymer methylation;0.0385231109460165!GO:0019362;pyridine nucleotide metabolic process;0.0394782679692501!GO:0000118;histone deacetylase complex;0.0396170718965502!GO:0006892;post-Golgi vesicle-mediated transport;0.0407865049208618!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0411952326415215!GO:0022407;regulation of cell-cell adhesion;0.0411952326415215!GO:0009161;ribonucleoside monophosphate metabolic process;0.0411952326415215!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0411952326415215!GO:0045792;negative regulation of cell size;0.0417075769408599!GO:0031418;L-ascorbic acid binding;0.0417458772660825!GO:0008094;DNA-dependent ATPase activity;0.0419330579506819!GO:0006643;membrane lipid metabolic process;0.0423093127119248!GO:0030384;phosphoinositide metabolic process;0.042456842044444!GO:0006376;mRNA splice site selection;0.0426610651064004!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0426610651064004!GO:0004680;casein kinase activity;0.0444011474498906!GO:0006284;base-excision repair;0.0469549705063393!GO:0004674;protein serine/threonine kinase activity;0.0469549705063393!GO:0047485;protein N-terminus binding;0.0469549705063393!GO:0031903;microbody membrane;0.0471046429334287!GO:0005778;peroxisomal membrane;0.0471046429334287!GO:0003682;chromatin binding;0.0474153496023361!GO:0006897;endocytosis;0.0478031928210159!GO:0010324;membrane invagination;0.0478031928210159!GO:0006338;chromatin remodeling;0.0479065599191003!GO:0031123;RNA 3'-end processing;0.0479110040703032!GO:0009119;ribonucleoside metabolic process;0.0479110040703032!GO:0006400;tRNA modification;0.0479845018791457!GO:0030308;negative regulation of cell growth;0.0484826377907738!GO:0005657;replication fork;0.0487508263166154!GO:0006518;peptide metabolic process;0.0488016607430355!GO:0008097;5S rRNA binding;0.0488016607430355!GO:0004563;beta-N-acetylhexosaminidase activity;0.0490819429935765!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0490819429935765!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0495408452951307!GO:0046813;virion attachment, binding of host cell surface receptor;0.0495408452951307!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0495408452951307!GO:0030503;regulation of cell redox homeostasis;0.049602713435437
|sample_id=11269
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|top_motifs=HES1:2.11083212596;RXR{A,B,G}:1.61269873736;ZNF238:1.32416122089;ALX4:1.13753819276;GZF1:1.04961176281;NKX2-2,8:1.04883911393;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.972370136283;bHLH_family:0.957561190054;UFEwm:0.892978799115;TFAP4:0.864813873253;NKX2-1,4:0.793520812912;ESR1:0.779080871877;EN1,2:0.725746678829;HOX{A4,D4}:0.723022038402;ONECUT1,2:0.701213457475;ESRRA:0.681624116801;FOXQ1:0.658839901472;ZNF423:0.644470867989;PAX1,9:0.580391818702;TAL1_TCF{3,4,12}:0.57501667806;STAT5{A,B}:0.568562035384;LHX3,4:0.566489617145;HOX{A5,B5}:0.562834272913;TFCP2:0.527818462418;NR3C1:0.493829865003;KLF4:0.460815773327;GATA4:0.437548696546;TP53:0.425881000942;XBP1:0.390314879212;HOX{A6,A7,B6,B7}:0.381263946001;POU3F1..4:0.366549509143;SPZ1:0.356386685738;PAX8:0.352241557415;MTF1:0.348455348816;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.326511133271;YY1:0.318738579977;AR:0.312280468253;GFI1B:0.3063684942;ZIC1..3:0.28038629613;FOXL1:0.275826106238;TEAD1:0.275089702161;BACH2:0.270561989167;AHR_ARNT_ARNT2:0.263668658643;IKZF1:0.261005700479;HIF1A:0.255060320541;ZBTB6:0.215774009374;GTF2I:0.214704357946;TLX1..3_NFIC{dimer}:0.205821329944;FOS_FOS{B,L1}_JUN{B,D}:0.205338988495;NFE2L1:0.204301769221;NFIX:0.163120732213;HNF4A_NR2F1,2:0.156815086914;EBF1:0.142768630756;NFATC1..3:0.142492829578;ARID5B:0.126800461924;TFAP2{A,C}:0.12227261655;TBX4,5:0.120987302786;TOPORS:0.099106916076;TEF:0.0958922090387;NFE2L2:0.0807937904123;NHLH1,2:0.0796802605863;SRF:0.0641129726121;GTF2A1,2:0.0583649260243;HLF:0.0501337375423;ZNF143:0.0228778932563;GCM1,2:0.0190112845782;FOSL2:0.000436455006812;CEBPA,B_DDIT3:0.000226327048326;ATF6:-0.000158015049217;LEF1_TCF7_TCF7L1,2:-0.00359952869003;MYFfamily:-0.0160519802647;MYBL2:-0.0166670699942;HNF1A:-0.0192249000668;HSF1,2:-0.0238782083604;TFDP1:-0.0291393272186;EGR1..3:-0.0328519978732;GLI1..3:-0.0364176783424;NANOG{mouse}:-0.0447359581004;ELK1,4_GABP{A,B1}:-0.0569932980294;ADNP_IRX_SIX_ZHX:-0.0624653864024;NKX3-2:-0.062571957888;FOXD3:-0.0646720605007;PAX5:-0.0735683597203;PRDM1:-0.0748478428191;SOX17:-0.0750176645413;PPARG:-0.0790887983725;REST:-0.0852656584808;NRF1:-0.0896913743003;POU2F1..3:-0.149102836974;PDX1:-0.149483587861;HAND1,2:-0.15278443315;RFX1:-0.154948145766;AIRE:-0.162787863865;PRRX1,2:-0.163404836578;NR5A1,2:-0.165482741865;TFAP2B:-0.175878839651;TBP:-0.18177151054;NKX6-1,2:-0.19167805922;NFE2:-0.204799558663;EVI1:-0.211676258509;MTE{core}:-0.217446962373;HIC1:-0.230800975603;HMX1:-0.235996688417;MEF2{A,B,C,D}:-0.236939468028;CRX:-0.238424203154;SREBF1,2:-0.241800542236;CREB1:-0.247573502739;PATZ1:-0.248302714995;PAX3,7:-0.25107818412;ZFP161:-0.267525124756;MZF1:-0.269311832891;MYB:-0.289278547601;NANOG:-0.29382699485;PBX1:-0.296837314307;MED-1{core}:-0.308039031741;NFIL3:-0.308468530617;RREB1:-0.324186198853;NFKB1_REL_RELA:-0.347490580808;NR6A1:-0.3479172227;TGIF1:-0.357422310243;NR1H4:-0.364661759435;SPIB:-0.391985797332;ELF1,2,4:-0.394259984891;MAZ:-0.395286529341;RUNX1..3:-0.401611425114;SPI1:-0.401729657303;STAT2,4,6:-0.404333944848;PAX6:-0.407847198601;NKX3-1:-0.408503874899;ZBTB16:-0.40896695589;ZNF148:-0.413919536974;MAFB:-0.417652244006;PAX4:-0.425620145626;DMAP1_NCOR{1,2}_SMARC:-0.434257642542;CDX1,2,4:-0.445625683115;ALX1:-0.461466393771;GFI1:-0.463642134141;FOXM1:-0.468182466787;ETS1,2:-0.475636447003;HOXA9_MEIS1:-0.480073992062;XCPE1{core}:-0.492219339433;FOX{I1,J2}:-0.498267446251;RFX2..5_RFXANK_RFXAP:-0.499099162677;HBP1_HMGB_SSRP1_UBTF:-0.518984656641;GATA6:-0.526691739463;MYOD1:-0.526949058336;FOXO1,3,4:-0.535294490009;T:-0.539793980987;NKX2-3_NKX2-5:-0.541453033525;E2F1..5:-0.568431464949;FOX{D1,D2}:-0.571754169537;SP1:-0.575243714465;ATF2:-0.580215809019;OCT4_SOX2{dimer}:-0.580286291519;ATF5_CREB3:-0.599390144914;DBP:-0.606910518487;JUN:-0.6179569364;IRF1,2:-0.627828885429;RBPJ:-0.634887369872;TLX2:-0.639016092382;CDC5L:-0.657996410046;SMAD1..7,9:-0.667262452871;LMO2:-0.675407737826;ZEB1:-0.694478991673;PAX2:-0.718309035855;POU1F1:-0.752607709459;CUX2:-0.755133816312;FOXP3:-0.773686403357;VSX1,2:-0.775679776725;NFY{A,B,C}:-0.787341923238;STAT1,3:-0.799991411775;RORA:-0.813635584899;BREu{core}:-0.816962051167;FOXA2:-0.835992730523;SNAI1..3:-0.85019574476;IRF7:-0.885219717791;SOX5:-0.896149243481;ZNF384:-0.926158110831;POU6F1:-0.936108859276;BPTF:-0.942893330069;ATF4:-0.953710736175;SOX2:-1.07690831016;FOXP1:-1.08375560946;SOX{8,9,10}:-1.12125742714;RXRA_VDR{dimer}:-1.15944077142;HMGA1,2:-1.23889920443;IKZF2:-1.26084919126;FOX{F1,F2,J1}:-1.26442920234;POU5F1:-1.28687389507;FOXN1:-1.3403045937;PITX1..3:-1.41995085405;EP300:-1.47196617723
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11269-116G9;search_select_hide=table117:FF:11269-116G9
}}
}}

Latest revision as of 16:29, 3 June 2020

Name:Fibroblast - Dermal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12499
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage71 years old adult
sexmale
age71
cell typefibroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1378
catalog numberCA106-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004983
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12499 CAGE DRX008254 DRR009126
Accession ID Hg19

Library idBAMCTSS
CNhs12499 DRZ000551 DRZ001936
Accession ID Hg38

Library idBAMCTSS
CNhs12499 DRZ011901 DRZ013286
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004983
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.ACAGTG sRNA-Seq DRX036992 DRR041358
Accession ID Hg19

Library idBAMCTSS
SRhi10002.ACAGTG DRZ007000


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0654
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0954
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.011
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.226
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0964
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.608
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0965
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.065
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.194
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.114
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0309
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.127
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0799
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.0333
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.37
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.581
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.118
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.836
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12499

Jaspar motifP-value
MA0002.20.794
MA0003.10.199
MA0004.10.117
MA0006.10.965
MA0007.10.028
MA0009.10.289
MA0014.10.998
MA0017.10.407
MA0018.25.54934e-7
MA0019.10.748
MA0024.11.16689e-4
MA0025.10.00332
MA0027.10.864
MA0028.10.59
MA0029.10.308
MA0030.10.0679
MA0031.10.22
MA0035.20.188
MA0038.13.71776e-4
MA0039.20.23
MA0040.10.854
MA0041.10.559
MA0042.10.722
MA0043.11.16004e-7
MA0046.10.602
MA0047.20.219
MA0048.10.352
MA0050.19.94855e-6
MA0051.10.0088
MA0052.10.931
MA0055.10.4
MA0057.10.179
MA0058.10.131
MA0059.10.0108
MA0060.16.40247e-7
MA0061.10.535
MA0062.20.00315
MA0065.20.0861
MA0066.10.0286
MA0067.10.0177
MA0068.10.16
MA0069.10.374
MA0070.10.937
MA0071.10.282
MA0072.10.949
MA0073.10.768
MA0074.10.202
MA0076.10.138
MA0077.10.525
MA0078.10.613
MA0079.20.971
MA0080.23.64887e-5
MA0081.10.132
MA0083.10.434
MA0084.10.704
MA0087.10.636
MA0088.10.00295
MA0090.10.0765
MA0091.10.112
MA0092.10.597
MA0093.10.177
MA0099.22.04336e-4
MA0100.10.949
MA0101.10.0178
MA0102.20.0827
MA0103.10.0956
MA0104.20.0225
MA0105.10.138
MA0106.10.0133
MA0107.10.00517
MA0108.20.625
MA0111.10.926
MA0112.20.00318
MA0113.10.0918
MA0114.10.206
MA0115.10.878
MA0116.10.121
MA0117.10.164
MA0119.10.0759
MA0122.10.675
MA0124.10.351
MA0125.10.169
MA0131.10.0652
MA0135.10.384
MA0136.19.36107e-5
MA0137.20.124
MA0138.20.612
MA0139.10.618
MA0140.10.295
MA0141.10.00915
MA0142.10.336
MA0143.10.36
MA0144.10.984
MA0145.10.529
MA0146.10.215
MA0147.10.0109
MA0148.10.288
MA0149.10.178
MA0150.10.974
MA0152.10.312
MA0153.10.86
MA0154.10.376
MA0155.10.629
MA0156.12.2634e-4
MA0157.10.703
MA0159.10.223
MA0160.10.389
MA0162.10.115
MA0163.16.66194e-4
MA0164.10.598
MA0258.10.202
MA0259.10.178



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12499

Novel motifP-value
10.224
100.162
1000.607
1010.782
1020.732
1030.0788
1040.573
1050.394
1060.458
1070.61
1080.0945
1090.0362
110.0664
1100.0627
1110.0696
1120.392
1130.0248
1140.083
1150.428
1160.0394
1170.245
1180.218
1190.946
120.663
1200.0172
1210.808
1220.301
1230.0142
1240.559
1250.515
1260.544
1270.413
1280.286
1290.748
130.616
1300.696
1310.911
1320.436
1330.387
1340.154
1350.762
1360.651
1370.183
1380.81
1390.827
140.235
1400.771
1410.704
1420.937
1430.063
1440.386
1450.297
1460.495
1470.0594
1480.48
1490.0539
150.444
1500.347
1510.587
1520.102
1530.386
1540.52
1550.0632
1560.327
1570.986
1580.0683
1590.286
160.0629
1600.0666
1610.614
1620.579
1630.883
1640.112
1650.821
1660.641
1670.853
1680.13
1690.0149
170.215
180.0566
190.0258
20.488
200.855
210.0709
220.074
230.586
240.373
250.693
260.059
270.116
280.146
290.0604
30.342
300.677
310.514
320.00862
330.426
340.872
350.459
360.324
370.0357
380.818
390.244
40.108
400.623
410.709
420.907
430.153
440.118
450.853
460.0749
470.365
480.234
490.308
50.847
500.313
510.172
520.883
530.252
540.251
550.079
560.804
570.297
580.768
590.156
60.888
600.969
610.76
620.685
630.0898
640.649
650.251
660.711
670.705
680.473
690.222
70.547
700.0461
710.115
720.826
730.0247
740.323
750.135
760.63
770.0711
780.78
790.114
80.00768
800.265
810.589
820.467
830.884
840.134
850.0785
860.72
870.0234
880.732
890.0635
90.252
900.993
910.985
920.0799
930.87
940.209
950.0672
960.874
970.85
980.398
990.011



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12499


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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