FF:11328-117E5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005471 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005471 | ||
|accession_numbers=CAGE;DRX008408;DRR009280;DRZ000705;DRZ002090;DRZ012055;DRZ013440 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037107;DRR041473;DRZ007115 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000139 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11328-117E5 | |id=FF:11328-117E5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000139 | ||
|is_obsolete= | |||
|library_id=CNhs11971 | |||
|library_id_phase_based=2:CNhs11971 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11328 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.CGTACG.11328 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11328 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.CGTACG.11328 | |||
|name=Preadipocyte - breast, donor2 | |name=Preadipocyte - breast, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11971,LSID836,release011,COMPLETED | |profile_hcage=CNhs11971,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.104966947077279,0,0.336599077228628,0.299468899389781,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586293750973796,0,0,0,0,0,0.482579454736234,0,0,0.0605353856719143,0,0,0,0,0,0,0,0,0,0,0,0,0.573964827120544,0.166325462995555,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0360592389252301,0,0.16829261592106,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0885640393401996,0,0,0,0,0,0,0.0289581494058579,0,0,0,-0.00350898641636932,-0.0477591920462255,0,0.739616761322224,0,0.107433877051114,-0.0980353512377064,0.261629777992409,0,0,0,0,0,0,0,0,0,0,0.053716938525557,0,0,0,0,0,0,0.0940304419675435,0,0,0,0.338062105293605,0.602067583641992,0,0,0.0282952258540618,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.107433877051114,-0.0980353512377064,0,0.107433877051114,0,0,0,0,0,0,0.739616761322224,0,0,-0.139744998234451,0.050797353933618,-0.0453100879683576,-0.0360812654723583,0,0,0.0533936244825799,0,0.326876421299287,0,0,0,0,0,0,0,0.539200557113672,0,0.769999229513772,0,0,0,0,0.136873952119792,-0.0401872537347424,0,0.0993794500671785,0.0390896159737454,0,0,0,0,0.496793072006674,0,0.0726124916570359,0.110771807127359,-0.210961900579505,0.248487641205799,0.0517213802699316,0,0,0,0.186891315623445,0.0787764543374843,0,0,0.462650672904964,0.0922878926560295,0,0,0.276275842514602,0,0.419332124429299,0.368708106838764,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552912602772798,0.28444377875575,0,0,0.107433877051114,0.0445326200253631,0.0617371360637357,0,0,-0.373286155956567,-0.0804229013313482,-0.0794899491085705,-0.184578419324576,0,-0.302389727009913,0.0153222850949883,0.0887570933612385,-0.0222803323906745,0.046090126079638,0.190826352230162,0.0209019006859668,0.193024104642497,-0.405464557334003,0.0326596964135922,0.0289581494058579,0,0.312161318452525,-0.0307384842939227,0,0,0.107433877051114,0.301744067926245,0,0,0.121317660957945,-0.0080149766334674,0.165191997970567,-0.0509755853140363,0.12047122531462,0.0906244349856471,-0.0395325284566706,0.0145326780717055,0,0.357676602094714,0,0,0,0.0453612808474727,-0.0931320265718282,-0.143857042210379,0,0.0632975606223961,-0.0683442610773682,0,0.058119485712242,-0.0550464043822023,0,0.370901044547024,0.088543193194825,0,0,0,0,0,-0.306750341731423,-0.110716012246516,0.0324294156081202,0,-0.065142760894241,0.0936591374925756,-0.200540092627198,0,-0.0620542434105342,0.0631142155528595,0,-0.0239028047876311,0,0.068757758977548,0.123749912154973,0.242687453230456,-0.095518384092451,0.0489870502392884,0.0091448275464927,0.0084488537609414,-0.00350898641636932,0.171965595563515,-0.101364614532639,0.238749588823999,0,0.596298939239246,-0.207529000653224,0,0.0364976472548637,0.107433877051114,-0.081793568069505,0,-0.086699170998134,0,-0.187186050131376,0.199183009848984,-0.331855497529573,0.0338433003470078,0,0.0112032982539693,-0.359354806990323,0,-0.02594137820663,0,0,-0.150367083334639,-0.186443692102031,0.16617584817688,-0.0852725181536378,0,-0.00818972840206489,0,0,0.491491054716885,-0.0419840623136122,0,-0.0115088474616833,0.211208866889691,0.0885640393401996,-0.00853719638382044,0.107433877051114,0,0.093916423329499,0,0.107433877051114,0.0343467243661462,0,0.200628457144453,-0.145892464435642,0.065148895662417,1.05511993344504,0,0,0.203280305814833,0,0.149887044700771,0,0,-0.0994183703478788,-0.00919423593901918,0,0,0.265284977163665,0,0,0,0,0,0,0,0,-0.201152978271778,0.192441692216929,0,-0.0925915221090837,0,0,0,0,0,-0.0436943606839829,0,0,0.517248865415697,0,0.203859005622866,0,0,0,0,0.0495615746101903,-0.203236562094724,0,-0.0244288294465181,0,0,0,0,0.107350985661565,0,0,0,0,0.0497034199974496,0.141498933753534,0,0,0,0.415825678933704,0,0,0,0,-0.0999638020526183,0,0.0974414995939149,0.391011096880516,0,0.0709215553999973,-0.0815818795468414,0,-0.05139670760101,0.539971447267435,-0.376243282947584,0,0.107433877051114,-0.261347131789888,0,0.32989375367802,0.124574765167453,0,0.107433877051114,0,0,0,0,0,0,0,-0.106880635348642,0,0,0,0,0,0,0,0.107433877051114,0,0,0,0.182486401743564,0.0152098203926032,0.156021753173007,0,0,0,0,0,0,-0.0241060230789031,0.0593174910825925,0,0,0.025640337567572,0,0,0,0,0,-0.363992062612128,0.053716938525557,0,0,0,0,0.16829261592106,0,0,0,0,0.491503921728448,0,0,0.269912890239863,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701728894153288,0.443004880183933,0,0.107433877051114,0,0,0,0,0,0.336599077228628,0,0.107433877051114,0,0,-0.00645049665786358,0,0,0,-0.104796384789156,0,0.104966947077279,0,0,0,0,0,0.0114744696775267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502818599349294,0.117599244851814,0.169498515311804,0.029824357683896,0,0,-0.0182402872412163,0,0,0,0,0,0,0.101302064553305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.007650988959358,0,0,0,0,0,0,0,0.482579454736234,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0643952842739549,0.380863305378458,0.00205888605706689,0,0,0,0.0782569160993775,0,0,0.0475938550982764,0,0.44447488699165,0,0,0,0,0,0,0,0,0.107433877051114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586293750973796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967459877253885,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107433877051114,0.113473507182138,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.107433877051114,0,0.193491975450777,0,0,0,0,0,0,0,0,0,0,0,0.107433877051114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193491975450777,0,0,0,0.376461563037197,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278654346060232,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.107433877051114,0,0,0,0,0.166325462995555,0,0,0,0,0.217647866502746,0,0,0,0,0,0,0,0.00754774269431805,0,0,0.611432375434719,0,0,0,0,0,0,0,0,0,0,0.528279821699087,0,0,0.814143785349934,0,0,0.053716938525557,0,0,0,0,0,0,0,0,0,0.203964798013539,0,0,0,0,0,0,0,0,0,0,-0.048430042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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 54: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.17E+07 | ||
|rna_weight_ug=16.8 | |rna_weight_ug=16.8 | ||
|rnaseq_library_id=SRhi10007.CGTACG | |||
|sample_age=40 | |sample_age=40 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=F-BR-F | |sample_cell_catalog=F-BR-F | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.16239334963332e-215!GO:0005737;cytoplasm;3.04735645925981e-177!GO:0043226;organelle;3.03088981021559e-154!GO:0043231;intracellular membrane-bound organelle;3.03088981021559e-154!GO:0043227;membrane-bound organelle;4.49049223489131e-154!GO:0043229;intracellular organelle;6.4056542099553e-154!GO:0044444;cytoplasmic part;6.10198861959894e-139!GO:0044422;organelle part;7.78136480802028e-111!GO:0044446;intracellular organelle part;1.97208003429109e-109!GO:0032991;macromolecular complex;1.41160434426598e-75!GO:0005515;protein binding;2.81115241916045e-73!GO:0044237;cellular metabolic process;6.43299872833836e-72!GO:0044238;primary metabolic process;6.46323161404153e-72!GO:0030529;ribonucleoprotein complex;9.22315930529457e-70!GO:0043170;macromolecule metabolic process;1.86476282547399e-64!GO:0005739;mitochondrion;3.55876543005857e-61!GO:0043233;organelle lumen;3.92633138256687e-57!GO:0031974;membrane-enclosed lumen;3.92633138256687e-57!GO:0031090;organelle membrane;4.36331266196742e-52!GO:0003723;RNA binding;1.3912781591154e-49!GO:0044428;nuclear part;4.85496700985652e-49!GO:0019538;protein metabolic process;1.16902903614968e-46!GO:0005840;ribosome;3.88649561273051e-45!GO:0005634;nucleus;3.18772871355428e-44!GO:0006412;translation;2.7770039467962e-42!GO:0044260;cellular macromolecule metabolic process;8.48089694737266e-42!GO:0015031;protein transport;3.63469430394786e-41!GO:0044429;mitochondrial part;6.53170639778433e-41!GO:0044267;cellular protein metabolic process;8.37695969609808e-41!GO:0016043;cellular component organization and biogenesis;1.15085007699484e-40!GO:0003735;structural constituent of ribosome;3.48768407747934e-40!GO:0009058;biosynthetic process;1.04073037507224e-39!GO:0033036;macromolecule localization;1.11142106915826e-39!GO:0045184;establishment of protein localization;4.52017160035473e-38!GO:0008104;protein localization;1.73419314417027e-37!GO:0043234;protein complex;3.76862751098193e-37!GO:0009059;macromolecule biosynthetic process;1.02034733955704e-35!GO:0005829;cytosol;1.64251852939379e-35!GO:0031967;organelle envelope;2.81893924242068e-35!GO:0031975;envelope;4.46819514877834e-35!GO:0044249;cellular biosynthetic process;4.67948147090236e-35!GO:0006396;RNA processing;1.60619213092697e-34!GO:0033279;ribosomal subunit;3.32072845764352e-34!GO:0046907;intracellular transport;2.29847884329273e-32!GO:0031981;nuclear lumen;1.84009664919889e-31!GO:0043283;biopolymer metabolic process;6.13696378901856e-31!GO:0010467;gene expression;2.24817118271882e-29!GO:0005740;mitochondrial envelope;1.74953870472172e-28!GO:0016071;mRNA metabolic process;2.33779500553544e-28!GO:0006886;intracellular protein transport;3.0558519194763e-27!GO:0008380;RNA splicing;3.07799006880126e-27!GO:0031966;mitochondrial membrane;6.26732684362984e-27!GO:0019866;organelle inner membrane;9.4970731736084e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.56672748458534e-25!GO:0005783;endoplasmic reticulum;7.13309875249884e-25!GO:0005743;mitochondrial inner membrane;8.00420057696176e-25!GO:0006397;mRNA processing;3.27052842773679e-24!GO:0065003;macromolecular complex assembly;1.80042425684018e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.90707212015333e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.7012314248881e-23!GO:0022607;cellular component assembly;8.95378005345645e-22!GO:0006119;oxidative phosphorylation;1.8776352402042e-21!GO:0012505;endomembrane system;7.17689375281885e-21!GO:0006996;organelle organization and biogenesis;2.24070015603728e-20!GO:0006457;protein folding;4.10649415266049e-20!GO:0044455;mitochondrial membrane part;7.20084827581872e-20!GO:0005654;nucleoplasm;1.49790575933836e-19!GO:0044432;endoplasmic reticulum part;1.9248031511643e-19!GO:0005681;spliceosome;3.74199141507658e-19!GO:0044445;cytosolic part;6.42099931037246e-19!GO:0051649;establishment of cellular localization;6.54670255863273e-19!GO:0051641;cellular localization;7.23809380503933e-19!GO:0005794;Golgi apparatus;7.52534961802617e-19!GO:0015934;large ribosomal subunit;1.31024241373496e-18!GO:0048770;pigment granule;2.97143156820945e-18!GO:0042470;melanosome;2.97143156820945e-18!GO:0043228;non-membrane-bound organelle;1.61334542091587e-17!GO:0043232;intracellular non-membrane-bound organelle;1.61334542091587e-17!GO:0015935;small ribosomal subunit;1.61579086910478e-16!GO:0005746;mitochondrial respiratory chain;2.06981657619965e-16!GO:0048193;Golgi vesicle transport;2.32657773042195e-16!GO:0051186;cofactor metabolic process;3.00744099903431e-16!GO:0008134;transcription factor binding;3.56482478563356e-16!GO:0044451;nucleoplasm part;5.91824408679523e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.53758438046837e-15!GO:0016462;pyrophosphatase activity;2.68110529203815e-15!GO:0031980;mitochondrial lumen;3.39048509917708e-15!GO:0005759;mitochondrial matrix;3.39048509917708e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;3.60458196502208e-15!GO:0022618;protein-RNA complex assembly;3.86825916476036e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.96822813913068e-15!GO:0051082;unfolded protein binding;1.0638417896676e-14!GO:0017111;nucleoside-triphosphatase activity;1.14387391273486e-14!GO:0016874;ligase activity;1.53677499593502e-14!GO:0000166;nucleotide binding;2.36477571364032e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.36814787078756e-14!GO:0003954;NADH dehydrogenase activity;2.36814787078756e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.36814787078756e-14!GO:0006512;ubiquitin cycle;3.73430155699217e-14!GO:0006605;protein targeting;8.25049490653669e-14!GO:0016192;vesicle-mediated transport;9.25667478363585e-14!GO:0043285;biopolymer catabolic process;1.51308152474584e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.53181349788104e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.86790767511183e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.16628433438023e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.28087147647585e-13!GO:0044265;cellular macromolecule catabolic process;2.31677134304658e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;3.29727307327515e-13!GO:0008135;translation factor activity, nucleic acid binding;3.87644189019162e-13!GO:0005789;endoplasmic reticulum membrane;5.4414848439256e-13!GO:0006732;coenzyme metabolic process;5.90273223750355e-13!GO:0019941;modification-dependent protein catabolic process;6.17998186080539e-13!GO:0043632;modification-dependent macromolecule catabolic process;6.17998186080539e-13!GO:0044257;cellular protein catabolic process;6.38061445357812e-13!GO:0006511;ubiquitin-dependent protein catabolic process;8.46507532807907e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.27161448117364e-12!GO:0045271;respiratory chain complex I;1.27161448117364e-12!GO:0005747;mitochondrial respiratory chain complex I;1.27161448117364e-12!GO:0005730;nucleolus;1.41717353398934e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.69112044712011e-12!GO:0005761;mitochondrial ribosome;1.86023517204857e-12!GO:0000313;organellar ribosome;1.86023517204857e-12!GO:0009057;macromolecule catabolic process;1.99468682966739e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.01502309935257e-12!GO:0042773;ATP synthesis coupled electron transport;2.01502309935257e-12!GO:0009055;electron carrier activity;3.74212459225516e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.05820992751689e-12!GO:0030163;protein catabolic process;4.55908529133081e-12!GO:0005793;ER-Golgi intermediate compartment;1.21386056079089e-11!GO:0044248;cellular catabolic process;1.49534732156249e-11!GO:0006259;DNA metabolic process;1.73138575576103e-11!GO:0003676;nucleic acid binding;2.14660323591803e-11!GO:0043412;biopolymer modification;2.86430107503993e-11!GO:0016070;RNA metabolic process;3.78346708749845e-11!GO:0003712;transcription cofactor activity;1.11840864698402e-10!GO:0006464;protein modification process;1.79179272582211e-10!GO:0017076;purine nucleotide binding;2.9581886550336e-10!GO:0032553;ribonucleotide binding;3.962930307095e-10!GO:0032555;purine ribonucleotide binding;3.962930307095e-10!GO:0012501;programmed cell death;4.56282834949814e-10!GO:0003743;translation initiation factor activity;5.09033156146738e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;6.17114653635827e-10!GO:0000375;RNA splicing, via transesterification reactions;6.17114653635827e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.17114653635827e-10!GO:0009259;ribonucleotide metabolic process;6.99078574980922e-10!GO:0006413;translational initiation;1.04097429143357e-09!GO:0006915;apoptosis;1.17600173527307e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.53774161517096e-09!GO:0008565;protein transporter activity;2.39831458696406e-09!GO:0009150;purine ribonucleotide metabolic process;2.71801731384822e-09!GO:0006446;regulation of translational initiation;4.07747753318562e-09!GO:0008219;cell death;4.57254560561686e-09!GO:0016265;death;4.57254560561686e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.62891542934795e-09!GO:0005788;endoplasmic reticulum lumen;4.84490871896018e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.09712181553087e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.33498110606725e-09!GO:0006163;purine nucleotide metabolic process;6.07458710686854e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.89849724415912e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.89849724415912e-09!GO:0009141;nucleoside triphosphate metabolic process;8.4365960974909e-09!GO:0009260;ribonucleotide biosynthetic process;9.16109808169481e-09!GO:0048523;negative regulation of cellular process;9.47847918408877e-09!GO:0044431;Golgi apparatus part;1.00772039041134e-08!GO:0008639;small protein conjugating enzyme activity;1.20635336202652e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.22268378572731e-08!GO:0043687;post-translational protein modification;1.27978877690055e-08!GO:0016491;oxidoreductase activity;1.30212199306009e-08!GO:0042254;ribosome biogenesis and assembly;1.41853604501131e-08!GO:0015986;ATP synthesis coupled proton transport;2.16145315302198e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.16145315302198e-08!GO:0004842;ubiquitin-protein ligase activity;2.42928833815709e-08!GO:0005768;endosome;2.62530447095027e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.74801534281534e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.74801534281534e-08!GO:0006164;purine nucleotide biosynthetic process;2.84378017170686e-08!GO:0031965;nuclear membrane;2.8917113440583e-08!GO:0006913;nucleocytoplasmic transport;2.91798980753801e-08!GO:0016604;nuclear body;2.94755051743682e-08!GO:0019787;small conjugating protein ligase activity;3.2827558044728e-08!GO:0030120;vesicle coat;3.52818907049564e-08!GO:0030662;coated vesicle membrane;3.52818907049564e-08!GO:0007049;cell cycle;3.73770220314692e-08!GO:0009060;aerobic respiration;4.22850699204388e-08!GO:0005635;nuclear envelope;4.5458108024874e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.61306768160154e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.61306768160154e-08!GO:0046034;ATP metabolic process;4.80548192474962e-08!GO:0051169;nuclear transport;4.87910230091518e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.28909702856373e-08!GO:0003714;transcription corepressor activity;8.20324713445436e-08!GO:0051188;cofactor biosynthetic process;8.75554010472273e-08!GO:0017038;protein import;9.31326837259713e-08!GO:0005524;ATP binding;9.83115585396785e-08!GO:0045333;cellular respiration;1.04146619688516e-07!GO:0006461;protein complex assembly;1.21188144240829e-07!GO:0005773;vacuole;1.35846159297861e-07!GO:0030554;adenyl nucleotide binding;1.37802455528143e-07!GO:0032559;adenyl ribonucleotide binding;1.42643184758423e-07!GO:0006399;tRNA metabolic process;1.7876387334076e-07!GO:0048475;coated membrane;2.05779780629033e-07!GO:0030117;membrane coat;2.05779780629033e-07!GO:0016887;ATPase activity;2.13004864731314e-07!GO:0042623;ATPase activity, coupled;2.23632751048888e-07!GO:0019829;cation-transporting ATPase activity;2.23632751048888e-07!GO:0006366;transcription from RNA polymerase II promoter;2.25504831648325e-07!GO:0008361;regulation of cell size;2.37344138719051e-07!GO:0006754;ATP biosynthetic process;2.56506352141385e-07!GO:0006753;nucleoside phosphate metabolic process;2.56506352141385e-07!GO:0016049;cell growth;2.90824154848932e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.96389064090371e-07!GO:0048519;negative regulation of biological process;3.28663005277258e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.52334075946594e-07!GO:0016607;nuclear speck;3.80982338367764e-07!GO:0016881;acid-amino acid ligase activity;4.02903490849292e-07!GO:0009056;catabolic process;4.31558941524524e-07!GO:0044453;nuclear membrane part;4.40350188148093e-07!GO:0007005;mitochondrion organization and biogenesis;4.53526680877182e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.4698432557268e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.4698432557268e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.4698432557268e-07!GO:0016564;transcription repressor activity;6.54711094701594e-07!GO:0051187;cofactor catabolic process;8.68093069323353e-07!GO:0006974;response to DNA damage stimulus;9.38095959714787e-07!GO:0043038;amino acid activation;9.65139143065281e-07!GO:0006418;tRNA aminoacylation for protein translation;9.65139143065281e-07!GO:0043039;tRNA aminoacylation;9.65139143065281e-07!GO:0003924;GTPase activity;1.04550730154574e-06!GO:0006099;tricarboxylic acid cycle;1.25376405072553e-06!GO:0046356;acetyl-CoA catabolic process;1.25376405072553e-06!GO:0051789;response to protein stimulus;1.30630644258189e-06!GO:0006986;response to unfolded protein;1.30630644258189e-06!GO:0005798;Golgi-associated vesicle;1.41061589053368e-06!GO:0000323;lytic vacuole;1.44299413660585e-06!GO:0005764;lysosome;1.44299413660585e-06!GO:0000139;Golgi membrane;1.72423224968476e-06!GO:0009109;coenzyme catabolic process;1.8565631144424e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.96138734523884e-06!GO:0006752;group transfer coenzyme metabolic process;2.68437813245753e-06!GO:0008654;phospholipid biosynthetic process;2.72348605839115e-06!GO:0006084;acetyl-CoA metabolic process;2.89336061814398e-06!GO:0009108;coenzyme biosynthetic process;2.91662245139457e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.98812271404076e-06!GO:0031988;membrane-bound vesicle;3.02086812434454e-06!GO:0065002;intracellular protein transport across a membrane;3.0978177945277e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.52874756210216e-06!GO:0001558;regulation of cell growth;3.89817860977476e-06!GO:0009117;nucleotide metabolic process;3.96936224871858e-06!GO:0051246;regulation of protein metabolic process;4.05348573345487e-06!GO:0006091;generation of precursor metabolites and energy;4.90827038679377e-06!GO:0016853;isomerase activity;4.96461623330867e-06!GO:0031252;leading edge;5.57456599208259e-06!GO:0045259;proton-transporting ATP synthase complex;5.58096796495865e-06!GO:0030036;actin cytoskeleton organization and biogenesis;5.71083109049061e-06!GO:0050794;regulation of cellular process;5.92792455974073e-06!GO:0032446;protein modification by small protein conjugation;6.16287888732442e-06!GO:0022402;cell cycle process;8.36750276126511e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.3842429936259e-06!GO:0016567;protein ubiquitination;8.46037199738387e-06!GO:0051726;regulation of cell cycle;9.15613820369369e-06!GO:0043067;regulation of programmed cell death;1.16983070616369e-05!GO:0031324;negative regulation of cellular metabolic process;1.16983070616369e-05!GO:0000074;regulation of progression through cell cycle;1.16983070616369e-05!GO:0000151;ubiquitin ligase complex;1.2494203035777e-05!GO:0009719;response to endogenous stimulus;1.45415779367621e-05!GO:0005643;nuclear pore;1.50015965075988e-05!GO:0042981;regulation of apoptosis;1.60978882875177e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.63401577595442e-05!GO:0030133;transport vesicle;1.7155877719117e-05!GO:0008026;ATP-dependent helicase activity;1.73126557909884e-05!GO:0045454;cell redox homeostasis;1.7570801543395e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.76021107874944e-05!GO:0043069;negative regulation of programmed cell death;1.84394103598826e-05!GO:0044440;endosomal part;2.33766352820942e-05!GO:0010008;endosome membrane;2.33766352820942e-05!GO:0004386;helicase activity;2.36734839729318e-05!GO:0006613;cotranslational protein targeting to membrane;2.38881908730312e-05!GO:0045786;negative regulation of progression through cell cycle;2.42462394117664e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.44318327190324e-05!GO:0031982;vesicle;2.55484734635154e-05!GO:0016787;hydrolase activity;3.04130710441225e-05!GO:0005667;transcription factor complex;3.19472238043815e-05!GO:0031410;cytoplasmic vesicle;3.1956943939377e-05!GO:0006364;rRNA processing;3.1956943939377e-05!GO:0006281;DNA repair;3.1956943939377e-05!GO:0043066;negative regulation of apoptosis;3.40863221652428e-05!GO:0051170;nuclear import;3.53555798984608e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.53555798984608e-05!GO:0005770;late endosome;3.71319304200691e-05!GO:0000245;spliceosome assembly;3.7395656138743e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.36854272639443e-05!GO:0005762;mitochondrial large ribosomal subunit;4.81015774976879e-05!GO:0000315;organellar large ribosomal subunit;4.81015774976879e-05!GO:0003697;single-stranded DNA binding;4.86042513607019e-05!GO:0016072;rRNA metabolic process;4.9061121917734e-05!GO:0006606;protein import into nucleus;4.91949505221075e-05!GO:0044262;cellular carbohydrate metabolic process;5.30275696719214e-05!GO:0030029;actin filament-based process;5.74407704347229e-05!GO:0006793;phosphorus metabolic process;6.58571556305624e-05!GO:0006796;phosphate metabolic process;6.58571556305624e-05!GO:0005791;rough endoplasmic reticulum;6.87797707106553e-05!GO:0005525;GTP binding;7.19474111467545e-05!GO:0030867;rough endoplasmic reticulum membrane;7.62608628682763e-05!GO:0046930;pore complex;8.4994874531794e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.5235539796653e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.64931433301152e-05!GO:0009892;negative regulation of metabolic process;8.82295516964044e-05!GO:0046474;glycerophospholipid biosynthetic process;9.05739845347793e-05!GO:0005905;coated pit;9.41119456424053e-05!GO:0004298;threonine endopeptidase activity;9.51248733263735e-05!GO:0006916;anti-apoptosis;0.000106507043802079!GO:0016859;cis-trans isomerase activity;0.000106544095743037!GO:0019867;outer membrane;0.000148369508090945!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000148954147589335!GO:0043566;structure-specific DNA binding;0.000153232073673836!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00016044885886304!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000186437375847856!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000187012006451436!GO:0006612;protein targeting to membrane;0.00021485161831478!GO:0065004;protein-DNA complex assembly;0.000229917682274159!GO:0005769;early endosome;0.000253559644372161!GO:0016740;transferase activity;0.000254654023945837!GO:0006839;mitochondrial transport;0.000265913954673769!GO:0008610;lipid biosynthetic process;0.000269092053872821!GO:0003724;RNA helicase activity;0.000271546529201667!GO:0043021;ribonucleoprotein binding;0.000272035642729404!GO:0016310;phosphorylation;0.000272440514611418!GO:0050789;regulation of biological process;0.000272440514611418!GO:0031968;organelle outer membrane;0.000282715639844552!GO:0005048;signal sequence binding;0.000285177767561489!GO:0006403;RNA localization;0.000295509615794517!GO:0000278;mitotic cell cycle;0.000297071969226008!GO:0007050;cell cycle arrest;0.00030088576456473!GO:0006323;DNA packaging;0.000319781186847287!GO:0050657;nucleic acid transport;0.00032614271627367!GO:0051236;establishment of RNA localization;0.00032614271627367!GO:0050658;RNA transport;0.00032614271627367!GO:0005885;Arp2/3 protein complex;0.000338980587562537!GO:0008092;cytoskeletal protein binding;0.000344303375064963!GO:0040008;regulation of growth;0.000344757483695835!GO:0004576;oligosaccharyl transferase activity;0.000346996976950744!GO:0030663;COPI coated vesicle membrane;0.000347820380156109!GO:0030126;COPI vesicle coat;0.000347820380156109!GO:0032561;guanyl ribonucleotide binding;0.000356242651708426!GO:0019001;guanyl nucleotide binding;0.000356242651708426!GO:0016563;transcription activator activity;0.000378614498207427!GO:0008250;oligosaccharyl transferase complex;0.000429379791960142!GO:0003713;transcription coactivator activity;0.000452840112938585!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000506462559398412!GO:0006260;DNA replication;0.000518757912650785!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000536023061214055!GO:0030137;COPI-coated vesicle;0.000548732235040975!GO:0043623;cellular protein complex assembly;0.000581143835823354!GO:0046489;phosphoinositide biosynthetic process;0.000587753836810588!GO:0016044;membrane organization and biogenesis;0.000648038838311655!GO:0016481;negative regulation of transcription;0.000709325586420281!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000771394087673855!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000778296135719463!GO:0015399;primary active transmembrane transporter activity;0.000778296135719463!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000816725728588951!GO:0043284;biopolymer biosynthetic process;0.000888983290222658!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000909396967826194!GO:0006891;intra-Golgi vesicle-mediated transport;0.000977538489777659!GO:0005741;mitochondrial outer membrane;0.00102945567610365!GO:0051920;peroxiredoxin activity;0.00104290446190374!GO:0006979;response to oxidative stress;0.00105934613885345!GO:0018196;peptidyl-asparagine modification;0.0011114325886728!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0011114325886728!GO:0043681;protein import into mitochondrion;0.00115986713157294!GO:0000314;organellar small ribosomal subunit;0.00133904053190962!GO:0005763;mitochondrial small ribosomal subunit;0.00133904053190962!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00134389863326057!GO:0051427;hormone receptor binding;0.00134864231817346!GO:0051276;chromosome organization and biogenesis;0.00138946928588262!GO:0030176;integral to endoplasmic reticulum membrane;0.00139682597428151!GO:0006818;hydrogen transport;0.00143479050386618!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0014371961704944!GO:0015992;proton transport;0.00144175538376882!GO:0019843;rRNA binding;0.00145615441229425!GO:0016568;chromatin modification;0.00146172393697468!GO:0030658;transport vesicle membrane;0.00147813223100163!GO:0016126;sterol biosynthetic process;0.00161730731265262!GO:0046467;membrane lipid biosynthetic process;0.00173823038475056!GO:0006333;chromatin assembly or disassembly;0.00174434926686189!GO:0009165;nucleotide biosynthetic process;0.00174956715144467!GO:0007010;cytoskeleton organization and biogenesis;0.0017807643189203!GO:0051329;interphase of mitotic cell cycle;0.00180250041213423!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00184401708662635!GO:0016779;nucleotidyltransferase activity;0.00184401708662635!GO:0005813;centrosome;0.00196605602863009!GO:0006650;glycerophospholipid metabolic process;0.00213799650913125!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00214395766852847!GO:0031072;heat shock protein binding;0.00217935124426505!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00218854908756777!GO:0007006;mitochondrial membrane organization and biogenesis;0.00220226004405475!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00220498945372805!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00221252054375179!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00221252054375179!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00221252054375179!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00224014765545935!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00232165996956307!GO:0051325;interphase;0.00233300632231076!GO:0007243;protein kinase cascade;0.00235103954097127!GO:0035257;nuclear hormone receptor binding;0.00239189608319288!GO:0019899;enzyme binding;0.00262613746283568!GO:0006626;protein targeting to mitochondrion;0.00276484366853922!GO:0006414;translational elongation;0.00277132891232632!GO:0004177;aminopeptidase activity;0.00283820012696945!GO:0048471;perinuclear region of cytoplasm;0.00283880632865255!GO:0015630;microtubule cytoskeleton;0.00285084704854162!GO:0030132;clathrin coat of coated pit;0.00287034756390439!GO:0006892;post-Golgi vesicle-mediated transport;0.0028743750706488!GO:0048487;beta-tubulin binding;0.00287473466499587!GO:0003899;DNA-directed RNA polymerase activity;0.00287925691260283!GO:0007040;lysosome organization and biogenesis;0.00288886770228596!GO:0048500;signal recognition particle;0.00289709169727465!GO:0005815;microtubule organizing center;0.00291089979300134!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00310617878976542!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00312350082856355!GO:0051028;mRNA transport;0.00333262196836431!GO:0006383;transcription from RNA polymerase III promoter;0.00350715240487294!GO:0019752;carboxylic acid metabolic process;0.00357627257826615!GO:0008186;RNA-dependent ATPase activity;0.00370455717661496!GO:0006497;protein amino acid lipidation;0.00371941693434524!GO:0030027;lamellipodium;0.00376331909883188!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0037697622184061!GO:0006082;organic acid metabolic process;0.00387810817469181!GO:0007033;vacuole organization and biogenesis;0.00404034398376319!GO:0030134;ER to Golgi transport vesicle;0.00404153633786071!GO:0030880;RNA polymerase complex;0.00416740698383399!GO:0016197;endosome transport;0.00430883716988722!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00435337442877399!GO:0015002;heme-copper terminal oxidase activity;0.00435337442877399!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00435337442877399!GO:0004129;cytochrome-c oxidase activity;0.00435337442877399!GO:0030660;Golgi-associated vesicle membrane;0.00440121834061506!GO:0043492;ATPase activity, coupled to movement of substances;0.0047353689958223!GO:0030127;COPII vesicle coat;0.00486056364295014!GO:0012507;ER to Golgi transport vesicle membrane;0.00486056364295014!GO:0005583;fibrillar collagen;0.00488184777516859!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00490929448887046!GO:0030118;clathrin coat;0.00491174228192995!GO:0048522;positive regulation of cellular process;0.00499541908607853!GO:0003729;mRNA binding;0.00526851446073652!GO:0019222;regulation of metabolic process;0.00557856266748495!GO:0046483;heterocycle metabolic process;0.00571114468508453!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0057510318659398!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0057510318659398!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0057574131513866!GO:0006509;membrane protein ectodomain proteolysis;0.00576699961484607!GO:0033619;membrane protein proteolysis;0.00576699961484607!GO:0022890;inorganic cation transmembrane transporter activity;0.00580976739563157!GO:0006506;GPI anchor biosynthetic process;0.00603415479993077!GO:0005581;collagen;0.00621813539050013!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0063755644236254!GO:0045047;protein targeting to ER;0.0063755644236254!GO:0005869;dynactin complex;0.00639727036288742!GO:0043433;negative regulation of transcription factor activity;0.00661619580699482!GO:0042158;lipoprotein biosynthetic process;0.00664067905211983!GO:0001726;ruffle;0.00711013647693779!GO:0043488;regulation of mRNA stability;0.00744926486617594!GO:0043487;regulation of RNA stability;0.00744926486617594!GO:0048468;cell development;0.00763492954790802!GO:0017166;vinculin binding;0.00770782104774779!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00781223294702455!GO:0030384;phosphoinositide metabolic process;0.00781223294702455!GO:0030659;cytoplasmic vesicle membrane;0.00829485824595274!GO:0051168;nuclear export;0.00836745932771582!GO:0008180;signalosome;0.00846345007134867!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00846345007134867!GO:0000428;DNA-directed RNA polymerase complex;0.00846345007134867!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00858097202378529!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00875205511462956!GO:0004004;ATP-dependent RNA helicase activity;0.008885311823594!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00937120539573283!GO:0050811;GABA receptor binding;0.00937972612609994!GO:0045045;secretory pathway;0.00970043440753242!GO:0016363;nuclear matrix;0.00979783217272538!GO:0006505;GPI anchor metabolic process;0.00989384569288952!GO:0008312;7S RNA binding;0.0101383291652096!GO:0008139;nuclear localization sequence binding;0.0101796347145389!GO:0065009;regulation of a molecular function;0.0105400815205277!GO:0051252;regulation of RNA metabolic process;0.0106179347742295!GO:0000049;tRNA binding;0.0107665329873884!GO:0003779;actin binding;0.0109213787286947!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0110456514539205!GO:0007264;small GTPase mediated signal transduction;0.0111644482863054!GO:0003746;translation elongation factor activity;0.0111644482863054!GO:0001527;microfibril;0.0113771349788824!GO:0000059;protein import into nucleus, docking;0.0116598512964211!GO:0016860;intramolecular oxidoreductase activity;0.0116665941989929!GO:0007034;vacuolar transport;0.0116665941989929!GO:0006334;nucleosome assembly;0.0116665941989929!GO:0031418;L-ascorbic acid binding;0.0118138135876866!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0119358994850201!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0119358994850201!GO:0051087;chaperone binding;0.0119843637739095!GO:0051287;NAD binding;0.0119843637739095!GO:0045792;negative regulation of cell size;0.0131584560973357!GO:0005774;vacuolar membrane;0.0131699593925394!GO:0006402;mRNA catabolic process;0.0134540972377147!GO:0006790;sulfur metabolic process;0.0134562001926529!GO:0030041;actin filament polymerization;0.0138393069577482!GO:0030308;negative regulation of cell growth;0.0138698430411081!GO:0051128;regulation of cellular component organization and biogenesis;0.0143107600189089!GO:0035258;steroid hormone receptor binding;0.0145504764917788!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0145971361415652!GO:0006643;membrane lipid metabolic process;0.0150316271390858!GO:0015631;tubulin binding;0.0151936463669233!GO:0044420;extracellular matrix part;0.0154074660467432!GO:0006118;electron transport;0.0154079347068399!GO:0006354;RNA elongation;0.0154735626937984!GO:0030521;androgen receptor signaling pathway;0.0155419213384764!GO:0003690;double-stranded DNA binding;0.0155419213384764!GO:0031497;chromatin assembly;0.0157384458754386!GO:0006740;NADPH regeneration;0.0157811180902673!GO:0006098;pentose-phosphate shunt;0.0157811180902673!GO:0006595;polyamine metabolic process;0.0157948327141204!GO:0006984;ER-nuclear signaling pathway;0.0159284127690933!GO:0051540;metal cluster binding;0.0159284127690933!GO:0051536;iron-sulfur cluster binding;0.0159284127690933!GO:0005694;chromosome;0.0160366256066106!GO:0005862;muscle thin filament tropomyosin;0.0160764341956836!GO:0043022;ribosome binding;0.0162918638734501!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0163936832796905!GO:0050662;coenzyme binding;0.0169367968353334!GO:0045892;negative regulation of transcription, DNA-dependent;0.0173975668650685!GO:0016272;prefoldin complex;0.0177030386630147!GO:0005595;collagen type XII;0.0180748943251447!GO:0030145;manganese ion binding;0.018110304749148!GO:0003684;damaged DNA binding;0.0181814017104102!GO:0022403;cell cycle phase;0.0187830217612204!GO:0007030;Golgi organization and biogenesis;0.0191539360761377!GO:0006695;cholesterol biosynthetic process;0.0192596060485065!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0195068428277625!GO:0031529;ruffle organization and biogenesis;0.0196171116048848!GO:0000785;chromatin;0.0196633579520381!GO:0006897;endocytosis;0.0202943696135001!GO:0010324;membrane invagination;0.0202943696135001!GO:0030125;clathrin vesicle coat;0.0208603654471882!GO:0030665;clathrin coated vesicle membrane;0.0208603654471882!GO:0005801;cis-Golgi network;0.021051727360091!GO:0008154;actin polymerization and/or depolymerization;0.0215336810069221!GO:0065007;biological regulation;0.0215336810069221!GO:0031901;early endosome membrane;0.0215336810069221!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0216800391953616!GO:0035035;histone acetyltransferase binding;0.0218069322034115!GO:0033559;unsaturated fatty acid metabolic process;0.0218719028058841!GO:0006636;unsaturated fatty acid biosynthetic process;0.0218719028058841!GO:0006778;porphyrin metabolic process;0.0220300334763819!GO:0033013;tetrapyrrole metabolic process;0.0220300334763819!GO:0009967;positive regulation of signal transduction;0.0221830369528941!GO:0005684;U2-dependent spliceosome;0.0225744325782001!GO:0003711;transcription elongation regulator activity;0.0225744325782001!GO:0046519;sphingoid metabolic process;0.0226257854663138!GO:0007160;cell-matrix adhesion;0.0228892290162988!GO:0000082;G1/S transition of mitotic cell cycle;0.0228915033691388!GO:0008033;tRNA processing;0.0229307774676735!GO:0006739;NADP metabolic process;0.0231218808642234!GO:0045936;negative regulation of phosphate metabolic process;0.023217195042806!GO:0030518;steroid hormone receptor signaling pathway;0.0232598938607023!GO:0051101;regulation of DNA binding;0.0241475543225228!GO:0031589;cell-substrate adhesion;0.0242349514481328!GO:0044433;cytoplasmic vesicle part;0.0249831905557063!GO:0031902;late endosome membrane;0.025855417644135!GO:0031543;peptidyl-proline dioxygenase activity;0.0259974450576126!GO:0006644;phospholipid metabolic process;0.0273025407347263!GO:0000096;sulfur amino acid metabolic process;0.0274532056083609!GO:0030503;regulation of cell redox homeostasis;0.0274790193687019!GO:0000209;protein polyubiquitination;0.0276757908420651!GO:0006352;transcription initiation;0.0277875490617417!GO:0016408;C-acyltransferase activity;0.0278249470178336!GO:0044255;cellular lipid metabolic process;0.0278249470178336!GO:0000287;magnesium ion binding;0.0278249470178336!GO:0044437;vacuolar part;0.0283268963517968!GO:0051301;cell division;0.0287882610333179!GO:0051098;regulation of binding;0.0287882610333179!GO:0030119;AP-type membrane coat adaptor complex;0.0288851267918317!GO:0007041;lysosomal transport;0.0288997228102917!GO:0005586;collagen type III;0.0295458496800046!GO:0032984;macromolecular complex disassembly;0.0296575948503162!GO:0005832;chaperonin-containing T-complex;0.0300910909470772!GO:0044427;chromosomal part;0.0306207617813404!GO:0030433;ER-associated protein catabolic process;0.032169682410388!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.032169682410388!GO:0008147;structural constituent of bone;0.032576983335535!GO:0000902;cell morphogenesis;0.0334243249337338!GO:0032989;cellular structure morphogenesis;0.0334243249337338!GO:0051539;4 iron, 4 sulfur cluster binding;0.033570460172961!GO:0000339;RNA cap binding;0.0343170872616275!GO:0008022;protein C-terminus binding;0.0348280279096052!GO:0019798;procollagen-proline dioxygenase activity;0.0348512008168211!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0352723088092892!GO:0000030;mannosyltransferase activity;0.0352780992861921!GO:0042168;heme metabolic process;0.0353299193918879!GO:0003756;protein disulfide isomerase activity;0.0353299193918879!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0353299193918879!GO:0008632;apoptotic program;0.0354122683986588!GO:0009112;nucleobase metabolic process;0.0356200948931619!GO:0006289;nucleotide-excision repair;0.0356643937085575!GO:0006635;fatty acid beta-oxidation;0.0359131106121244!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0368613882982122!GO:0022408;negative regulation of cell-cell adhesion;0.0372879943612019!GO:0030833;regulation of actin filament polymerization;0.0374041468879711!GO:0008652;amino acid biosynthetic process;0.0378208296653185!GO:0003923;GPI-anchor transamidase activity;0.0379465116139652!GO:0016255;attachment of GPI anchor to protein;0.0379465116139652!GO:0042765;GPI-anchor transamidase complex;0.0379465116139652!GO:0048144;fibroblast proliferation;0.0390240843192817!GO:0048145;regulation of fibroblast proliferation;0.0390240843192817!GO:0005520;insulin-like growth factor binding;0.0397012725204362!GO:0005765;lysosomal membrane;0.0397648063812092!GO:0007021;tubulin folding;0.0399884724382801!GO:0045926;negative regulation of growth;0.0401467533986112!GO:0012506;vesicle membrane;0.0401467533986112!GO:0008484;sulfuric ester hydrolase activity;0.0405001452965543!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0405230349106353!GO:0030032;lamellipodium biogenesis;0.0413492312947344!GO:0006401;RNA catabolic process;0.0419523699757987!GO:0005975;carbohydrate metabolic process;0.0426261046277926!GO:0008320;protein transmembrane transporter activity;0.0429621856900952!GO:0007067;mitosis;0.0430233401073848!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0430233401073848!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0430233401073848!GO:0050681;androgen receptor binding;0.0434245780767815!GO:0033673;negative regulation of kinase activity;0.043638381314954!GO:0006469;negative regulation of protein kinase activity;0.043638381314954!GO:0043624;cellular protein complex disassembly;0.0438444773096089!GO:0004228;gelatinase A activity;0.0439172171032178!GO:0001955;blood vessel maturation;0.0439172171032178!GO:0000087;M phase of mitotic cell cycle;0.0439691644069059!GO:0043241;protein complex disassembly;0.0454510665000079!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0459703503704337!GO:0016251;general RNA polymerase II transcription factor activity;0.0460690150967752!GO:0030911;TPR domain binding;0.0463474800934525!GO:0044452;nucleolar part;0.0463474800934525!GO:0030508;thiol-disulfide exchange intermediate activity;0.0476157984154898!GO:0006672;ceramide metabolic process;0.0477358757733055!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0479546330482763!GO:0045639;positive regulation of myeloid cell differentiation;0.0486602797466671!GO:0015036;disulfide oxidoreductase activity;0.0489551800776081!GO:0051271;negative regulation of cell motility;0.0490259809066941!GO:0042326;negative regulation of phosphorylation;0.0494929430090497!GO:0030131;clathrin adaptor complex;0.0497612371439397!GO:0051716;cellular response to stimulus;0.0499587966998194 | |||
|sample_id=11328 | |sample_id=11328 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=breast | |sample_tissue=breast | ||
|top_motifs=UFEwm:2.80293496811;HES1:2.58757002108;NKX2-2,8:2.5521625292;ESR1:2.47847851635;ALX4:2.15678500232;XBP1:2.00479319188;TAL1_TCF{3,4,12}:1.90541596466;GLI1..3:1.80851566127;GZF1:1.79517867682;NKX3-1:1.72803758361;RXR{A,B,G}:1.68983082134;FOXL1:1.65397399965;EVI1:1.64426008286;PAX1,9:1.63483015221;RXRA_VDR{dimer}:1.59058346059;HMGA1,2:1.58041579901;ZNF238:1.56743668341;TP53:1.54097317567;NFE2L1:1.52129397953;NANOG{mouse}:1.51369281334;GCM1,2:1.50551744372;TFAP4:1.49245140398;NR6A1:1.42111404188;IKZF1:1.41263927373;ATF6:1.38596455943;HMX1:1.3326470274;TEAD1:1.26221302513;EBF1:1.24390463461;MAFB:1.23080888666;HOX{A5,B5}:1.19698534427;KLF4:1.18328889035;EN1,2:1.09880031923;SMAD1..7,9:1.03302492366;ZNF423:1.01391612038;NR3C1:1.01318519689;TFAP2B:0.983933033378;TEF:0.96031248529;TBX4,5:0.946300044867;NKX3-2:0.868848468457;SRF:0.854814719279;HIF1A:0.818703221251;GATA4:0.815191555983;MTE{core}:0.813599962643;MYBL2:0.812765856712;SPZ1:0.809931972199;ARID5B:0.738861807761;TFCP2:0.73869775709;HOX{A4,D4}:0.723928662143;GFI1B:0.663596395695;AIRE:0.649393106707;NFATC1..3:0.57908383527;NFIX:0.570060871889;HIC1:0.56434827897;GTF2I:0.536002603648;TLX1..3_NFIC{dimer}:0.525764298491;MAZ:0.52404323876;NKX2-1,4:0.522051920475;ZNF148:0.513577325473;HLF:0.510390788433;DBP:0.46663859101;LHX3,4:0.461919816366;ZIC1..3:0.454812361874;FOXA2:0.447723835598;MYB:0.439505894778;POU6F1:0.405195499453;PAX5:0.380908582068;GTF2A1,2:0.368948586333;TFAP2{A,C}:0.340966366396;AR:0.298116585943;HAND1,2:0.298109335045;RREB1:0.238825411624;HOX{A6,A7,B6,B7}:0.235515344565;MZF1:0.227401215727;NHLH1,2:0.209138107157;NFE2L2:0.190761327642;ZBTB6:0.180696775553;bHLH_family:0.155700326309;T:0.149219919645;PATZ1:0.144717233059;HSF1,2:0.129728961931;TOPORS:0.120244726904;ADNP_IRX_SIX_ZHX:0.114104737116;MTF1:0.0800906429874;MYFfamily:0.068368565076;SOX17:0.046693942631;STAT2,4,6:0.0405914028727;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0128036781581;TBP:0.00994778313669;YY1:0.00696032487257;FOXO1,3,4:-0.0254071043914;REST:-0.0260928594898;XCPE1{core}:-0.0335029096014;NR5A1,2:-0.0386042452599;SOX5:-0.0442097783947;PRDM1:-0.0611277936413;MEF2{A,B,C,D}:-0.0781556386651;BACH2:-0.163332443671;ONECUT1,2:-0.167114359297;STAT5{A,B}:-0.185185546355;ELK1,4_GABP{A,B1}:-0.19132316052;ZNF384:-0.193254379956;HBP1_HMGB_SSRP1_UBTF:-0.196991374364;HNF1A:-0.202215175395;CDC5L:-0.217555883142;EGR1..3:-0.236980200017;IKZF2:-0.237432713032;TFDP1:-0.259627808762;BPTF:-0.281025422382;PAX2:-0.291746426986;ZBTB16:-0.29421427831;CEBPA,B_DDIT3:-0.31959958488;SREBF1,2:-0.32470568696;OCT4_SOX2{dimer}:-0.32490228123;STAT1,3:-0.357564615521;PAX4:-0.363403317612;CREB1:-0.372607344758;FOS_FOS{B,L1}_JUN{B,D}:-0.385523731071;ZNF143:-0.411185136226;HNF4A_NR2F1,2:-0.419388635345;POU3F1..4:-0.42356375886;PAX8:-0.424536028638;LEF1_TCF7_TCF7L1,2:-0.482203930216;RFX1:-0.496839650054;IRF1,2:-0.497586602356;FOSL2:-0.51575967936;DMAP1_NCOR{1,2}_SMARC:-0.528534929948;PAX3,7:-0.532073227174;RUNX1..3:-0.534990712517;FOXP3:-0.537414847413;POU1F1:-0.547229597576;GFI1:-0.555111996094;SNAI1..3:-0.563822534255;FOX{D1,D2}:-0.564613186069;AHR_ARNT_ARNT2:-0.566372637138;NFE2:-0.567287501005;FOXM1:-0.574658989319;SPI1:-0.592209049085;PITX1..3:-0.593642401584;NFKB1_REL_RELA:-0.596254808449;TGIF1:-0.60662653502;SOX2:-0.614207986196;LMO2:-0.655473600871;MED-1{core}:-0.663070509433;ATF5_CREB3:-0.665034796115;EP300:-0.669702925034;ETS1,2:-0.678451302763;NRF1:-0.688489866828;FOXD3:-0.70004213034;NFIL3:-0.701070439047;ZEB1:-0.713093123363;PAX6:-0.729862418965;SP1:-0.732086901645;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.737089339178;SPIB:-0.737668477016;NKX6-1,2:-0.7580579151;ESRRA:-0.765119529837;SOX{8,9,10}:-0.768032324952;NKX2-3_NKX2-5:-0.827553077995;ZFP161:-0.840583481714;ATF4:-0.860915434575;JUN:-0.871726226202;POU5F1:-0.889090588261;PPARG:-0.900614913441;BREu{core}:-0.902491076682;ELF1,2,4:-0.905494806966;NR1H4:-0.915777195919;ALX1:-0.940071073589;E2F1..5:-0.949197261625;FOXP1:-0.959575629146;HOXA9_MEIS1:-0.99054994048;GATA6:-1.04588798876;FOX{I1,J2}:-1.05978319355;CDX1,2,4:-1.06066706897;FOXN1:-1.07402658132;PRRX1,2:-1.08868777199;TLX2:-1.0918561122;IRF7:-1.18286743297;CUX2:-1.23954749139;FOX{F1,F2,J1}:-1.24442871125;NFY{A,B,C}:-1.30504956489;RFX2..5_RFXANK_RFXAP:-1.35914680518;RORA:-1.36862229369;VSX1,2:-1.40612898189;ATF2:-1.40999462995;FOXQ1:-1.42714477876;MYOD1:-1.52983009729;PBX1:-1.5453215447;RBPJ:-1.58042704475;CRX:-1.58808334235;POU2F1..3:-1.65000594379;NANOG:-1.95683836211;PDX1:-1.98169871655 | |top_motifs=UFEwm:2.80293496811;HES1:2.58757002108;NKX2-2,8:2.5521625292;ESR1:2.47847851635;ALX4:2.15678500232;XBP1:2.00479319188;TAL1_TCF{3,4,12}:1.90541596466;GLI1..3:1.80851566127;GZF1:1.79517867682;NKX3-1:1.72803758361;RXR{A,B,G}:1.68983082134;FOXL1:1.65397399965;EVI1:1.64426008286;PAX1,9:1.63483015221;RXRA_VDR{dimer}:1.59058346059;HMGA1,2:1.58041579901;ZNF238:1.56743668341;TP53:1.54097317567;NFE2L1:1.52129397953;NANOG{mouse}:1.51369281334;GCM1,2:1.50551744372;TFAP4:1.49245140398;NR6A1:1.42111404188;IKZF1:1.41263927373;ATF6:1.38596455943;HMX1:1.3326470274;TEAD1:1.26221302513;EBF1:1.24390463461;MAFB:1.23080888666;HOX{A5,B5}:1.19698534427;KLF4:1.18328889035;EN1,2:1.09880031923;SMAD1..7,9:1.03302492366;ZNF423:1.01391612038;NR3C1:1.01318519689;TFAP2B:0.983933033378;TEF:0.96031248529;TBX4,5:0.946300044867;NKX3-2:0.868848468457;SRF:0.854814719279;HIF1A:0.818703221251;GATA4:0.815191555983;MTE{core}:0.813599962643;MYBL2:0.812765856712;SPZ1:0.809931972199;ARID5B:0.738861807761;TFCP2:0.73869775709;HOX{A4,D4}:0.723928662143;GFI1B:0.663596395695;AIRE:0.649393106707;NFATC1..3:0.57908383527;NFIX:0.570060871889;HIC1:0.56434827897;GTF2I:0.536002603648;TLX1..3_NFIC{dimer}:0.525764298491;MAZ:0.52404323876;NKX2-1,4:0.522051920475;ZNF148:0.513577325473;HLF:0.510390788433;DBP:0.46663859101;LHX3,4:0.461919816366;ZIC1..3:0.454812361874;FOXA2:0.447723835598;MYB:0.439505894778;POU6F1:0.405195499453;PAX5:0.380908582068;GTF2A1,2:0.368948586333;TFAP2{A,C}:0.340966366396;AR:0.298116585943;HAND1,2:0.298109335045;RREB1:0.238825411624;HOX{A6,A7,B6,B7}:0.235515344565;MZF1:0.227401215727;NHLH1,2:0.209138107157;NFE2L2:0.190761327642;ZBTB6:0.180696775553;bHLH_family:0.155700326309;T:0.149219919645;PATZ1:0.144717233059;HSF1,2:0.129728961931;TOPORS:0.120244726904;ADNP_IRX_SIX_ZHX:0.114104737116;MTF1:0.0800906429874;MYFfamily:0.068368565076;SOX17:0.046693942631;STAT2,4,6:0.0405914028727;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0128036781581;TBP:0.00994778313669;YY1:0.00696032487257;FOXO1,3,4:-0.0254071043914;REST:-0.0260928594898;XCPE1{core}:-0.0335029096014;NR5A1,2:-0.0386042452599;SOX5:-0.0442097783947;PRDM1:-0.0611277936413;MEF2{A,B,C,D}:-0.0781556386651;BACH2:-0.163332443671;ONECUT1,2:-0.167114359297;STAT5{A,B}:-0.185185546355;ELK1,4_GABP{A,B1}:-0.19132316052;ZNF384:-0.193254379956;HBP1_HMGB_SSRP1_UBTF:-0.196991374364;HNF1A:-0.202215175395;CDC5L:-0.217555883142;EGR1..3:-0.236980200017;IKZF2:-0.237432713032;TFDP1:-0.259627808762;BPTF:-0.281025422382;PAX2:-0.291746426986;ZBTB16:-0.29421427831;CEBPA,B_DDIT3:-0.31959958488;SREBF1,2:-0.32470568696;OCT4_SOX2{dimer}:-0.32490228123;STAT1,3:-0.357564615521;PAX4:-0.363403317612;CREB1:-0.372607344758;FOS_FOS{B,L1}_JUN{B,D}:-0.385523731071;ZNF143:-0.411185136226;HNF4A_NR2F1,2:-0.419388635345;POU3F1..4:-0.42356375886;PAX8:-0.424536028638;LEF1_TCF7_TCF7L1,2:-0.482203930216;RFX1:-0.496839650054;IRF1,2:-0.497586602356;FOSL2:-0.51575967936;DMAP1_NCOR{1,2}_SMARC:-0.528534929948;PAX3,7:-0.532073227174;RUNX1..3:-0.534990712517;FOXP3:-0.537414847413;POU1F1:-0.547229597576;GFI1:-0.555111996094;SNAI1..3:-0.563822534255;FOX{D1,D2}:-0.564613186069;AHR_ARNT_ARNT2:-0.566372637138;NFE2:-0.567287501005;FOXM1:-0.574658989319;SPI1:-0.592209049085;PITX1..3:-0.593642401584;NFKB1_REL_RELA:-0.596254808449;TGIF1:-0.60662653502;SOX2:-0.614207986196;LMO2:-0.655473600871;MED-1{core}:-0.663070509433;ATF5_CREB3:-0.665034796115;EP300:-0.669702925034;ETS1,2:-0.678451302763;NRF1:-0.688489866828;FOXD3:-0.70004213034;NFIL3:-0.701070439047;ZEB1:-0.713093123363;PAX6:-0.729862418965;SP1:-0.732086901645;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.737089339178;SPIB:-0.737668477016;NKX6-1,2:-0.7580579151;ESRRA:-0.765119529837;SOX{8,9,10}:-0.768032324952;NKX2-3_NKX2-5:-0.827553077995;ZFP161:-0.840583481714;ATF4:-0.860915434575;JUN:-0.871726226202;POU5F1:-0.889090588261;PPARG:-0.900614913441;BREu{core}:-0.902491076682;ELF1,2,4:-0.905494806966;NR1H4:-0.915777195919;ALX1:-0.940071073589;E2F1..5:-0.949197261625;FOXP1:-0.959575629146;HOXA9_MEIS1:-0.99054994048;GATA6:-1.04588798876;FOX{I1,J2}:-1.05978319355;CDX1,2,4:-1.06066706897;FOXN1:-1.07402658132;PRRX1,2:-1.08868777199;TLX2:-1.0918561122;IRF7:-1.18286743297;CUX2:-1.23954749139;FOX{F1,F2,J1}:-1.24442871125;NFY{A,B,C}:-1.30504956489;RFX2..5_RFXANK_RFXAP:-1.35914680518;RORA:-1.36862229369;VSX1,2:-1.40612898189;ATF2:-1.40999462995;FOXQ1:-1.42714477876;MYOD1:-1.52983009729;PBX1:-1.5453215447;RBPJ:-1.58042704475;CRX:-1.58808334235;POU2F1..3:-1.65000594379;NANOG:-1.95683836211;PDX1:-1.98169871655 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11328-117E5;search_select_hide=table117:FF:11328-117E5 | |||
}} | }} | ||
Latest revision as of 17:52, 4 June 2020
| Name: | Preadipocyte - breast, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11971 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11971
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11971
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.406 |
| 10 | 10 | 0.342 |
| 100 | 100 | 0.996 |
| 101 | 101 | 0.194 |
| 102 | 102 | 0.269 |
| 103 | 103 | 0.396 |
| 104 | 104 | 0.677 |
| 105 | 105 | 0.0598 |
| 106 | 106 | 0.0472 |
| 107 | 107 | 0.0396 |
| 108 | 108 | 0.157 |
| 109 | 109 | 0.478 |
| 11 | 11 | 0.384 |
| 110 | 110 | 0.455 |
| 111 | 111 | 0.359 |
| 112 | 112 | 0.303 |
| 113 | 113 | 0.243 |
| 114 | 114 | 0.0303 |
| 115 | 115 | 0.00852 |
| 116 | 116 | 0.0461 |
| 117 | 117 | 0.941 |
| 118 | 118 | 0.452 |
| 119 | 119 | 0.93 |
| 12 | 12 | 0.322 |
| 120 | 120 | 0.31 |
| 121 | 121 | 0.69 |
| 122 | 122 | 0.181 |
| 123 | 123 | 0.0506 |
| 124 | 124 | 0.44 |
| 125 | 125 | 0.815 |
| 126 | 126 | 0.765 |
| 127 | 127 | 0.52 |
| 128 | 128 | 0.106 |
| 129 | 129 | 0.941 |
| 13 | 13 | 0.956 |
| 130 | 130 | 0.532 |
| 131 | 131 | 0.973 |
| 132 | 132 | 0.475 |
| 133 | 133 | 0.864 |
| 134 | 134 | 0.631 |
| 135 | 135 | 0.529 |
| 136 | 136 | 0.566 |
| 137 | 137 | 0.537 |
| 138 | 138 | 0.92 |
| 139 | 139 | 0.222 |
| 14 | 14 | 0.28 |
| 140 | 140 | 0.717 |
| 141 | 141 | 0.991 |
| 142 | 142 | 0.995 |
| 143 | 143 | 0.431 |
| 144 | 144 | 0.653 |
| 145 | 145 | 0.904 |
| 146 | 146 | 0.756 |
| 147 | 147 | 0.176 |
| 148 | 148 | 0.99 |
| 149 | 149 | 0.00165 |
| 15 | 15 | 0.886 |
| 150 | 150 | 0.421 |
| 151 | 151 | 0.831 |
| 152 | 152 | 0.00682 |
| 153 | 153 | 0.193 |
| 154 | 154 | 0.872 |
| 155 | 155 | 0.105 |
| 156 | 156 | 0.961 |
| 157 | 157 | 0.574 |
| 158 | 158 | 0.0281 |
| 159 | 159 | 0.524 |
| 16 | 16 | 0.00914 |
| 160 | 160 | 0.533 |
| 161 | 161 | 0.7 |
| 162 | 162 | 0.369 |
| 163 | 163 | 0.614 |
| 164 | 164 | 0.174 |
| 165 | 165 | 0.752 |
| 166 | 166 | 0.305 |
| 167 | 167 | 0.54 |
| 168 | 168 | 0.946 |
| 169 | 169 | 0.0192 |
| 17 | 17 | 0.228 |
| 18 | 18 | 0.135 |
| 19 | 19 | 0.00428 |
| 2 | 2 | 0.302 |
| 20 | 20 | 0.602 |
| 21 | 21 | 0.283 |
| 22 | 22 | 0.223 |
| 23 | 23 | 0.237 |
| 24 | 24 | 0.131 |
| 25 | 25 | 0.43 |
| 26 | 26 | 0.266 |
| 27 | 27 | 0.441 |
| 28 | 28 | 0.264 |
| 29 | 29 | 0.658 |
| 3 | 3 | 0.4 |
| 30 | 30 | 0.679 |
| 31 | 31 | 0.475 |
| 32 | 32 | 1.12087e-16 |
| 33 | 33 | 0.727 |
| 34 | 34 | 0.88 |
| 35 | 35 | 0.624 |
| 36 | 36 | 0.0419 |
| 37 | 37 | 0.0784 |
| 38 | 38 | 0.749 |
| 39 | 39 | 0.293 |
| 4 | 4 | 0.96 |
| 40 | 40 | 0.59 |
| 41 | 41 | 0.944 |
| 42 | 42 | 0.386 |
| 43 | 43 | 0.191 |
| 44 | 44 | 0.0899 |
| 45 | 45 | 0.911 |
| 46 | 46 | 0.298 |
| 47 | 47 | 0.553 |
| 48 | 48 | 0.481 |
| 49 | 49 | 0.704 |
| 5 | 5 | 0.643 |
| 50 | 50 | 0.748 |
| 51 | 51 | 0.878 |
| 52 | 52 | 0.609 |
| 53 | 53 | 0.132 |
| 54 | 54 | 0.684 |
| 55 | 55 | 0.108 |
| 56 | 56 | 0.745 |
| 57 | 57 | 0.709 |
| 58 | 58 | 0.419 |
| 59 | 59 | 0.0338 |
| 6 | 6 | 0.514 |
| 60 | 60 | 0.504 |
| 61 | 61 | 0.785 |
| 62 | 62 | 0.803 |
| 63 | 63 | 0.279 |
| 64 | 64 | 0.776 |
| 65 | 65 | 0.388 |
| 66 | 66 | 0.244 |
| 67 | 67 | 0.551 |
| 68 | 68 | 0.334 |
| 69 | 69 | 0.414 |
| 7 | 7 | 0.411 |
| 70 | 70 | 0.296 |
| 71 | 71 | 0.271 |
| 72 | 72 | 0.731 |
| 73 | 73 | 0.00545 |
| 74 | 74 | 0.278 |
| 75 | 75 | 0.603 |
| 76 | 76 | 0.6 |
| 77 | 77 | 0.0323 |
| 78 | 78 | 0.834 |
| 79 | 79 | 0.00101 |
| 8 | 8 | 0.238 |
| 80 | 80 | 0.204 |
| 81 | 81 | 0.47 |
| 82 | 82 | 0.166 |
| 83 | 83 | 0.431 |
| 84 | 84 | 0.263 |
| 85 | 85 | 0.0319 |
| 86 | 86 | 0.468 |
| 87 | 87 | 0.116 |
| 88 | 88 | 0.816 |
| 89 | 89 | 0.0766 |
| 9 | 9 | 0.861 |
| 90 | 90 | 0.625 |
| 91 | 91 | 0.945 |
| 92 | 92 | 0.0745 |
| 93 | 93 | 0.39 |
| 94 | 94 | 0.907 |
| 95 | 95 | 0.187 |
| 96 | 96 | 0.942 |
| 97 | 97 | 0.659 |
| 98 | 98 | 0.941 |
| 99 | 99 | 0.0167 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11971
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000139 human preadipocyte of the breast sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002580 (preadipocyte of the breast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000139 (human preadipocyte of the breast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
