FF:11339-117F7: Difference between revisions

Latest revision as of 17:53, 4 June 2020

Name:	Chondrocyte - re diff, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11373
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cartilage
dev stage	60 years old adult
sex	male
age	60
cell type	chondrocyte
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1662
catalog number	CA402RD-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005779

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11373		CAGE		DRX008204		DRR009076

Accession ID Hg19

Library id		BAM		CTSS
CNhs11373		DRZ000501		DRZ001886

Accession ID Hg38

Library id		BAM		CTSS
CNhs11373		DRZ011851		DRZ013236

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005779

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10012.CTTGTA		sRNA-Seq		DRX037191		DRR041557

Accession ID Hg19

Library id		BAM		CTSS
SRhi10012.CTTGTA		DRZ007199

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.216
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.168
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0983
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.23
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.254
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0397
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.176
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.254
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.413
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0869
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.867
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.254
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0458
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0548
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.575
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.254
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	1.137
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.912
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.53
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.53
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.621
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.952
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11373

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.314
MA0003.1	MA0003.1	0.216
MA0004.1	MA0004.1	0.0529
MA0006.1	MA0006.1	0.194
MA0007.1	MA0007.1	0.508
MA0009.1	MA0009.1	0.125
MA0014.1	MA0014.1	0.13
MA0017.1	MA0017.1	0.767
MA0018.2	MA0018.2	0.00229
MA0019.1	MA0019.1	0.83
MA0024.1	MA0024.1	0.166
MA0025.1	MA0025.1	0.063
MA0027.1	MA0027.1	0.715
MA0028.1	MA0028.1	0.262
MA0029.1	MA0029.1	0.105
MA0030.1	MA0030.1	0.464
MA0031.1	MA0031.1	0.554
MA0035.2	MA0035.2	0.00196
MA0038.1	MA0038.1	0.546
MA0039.2	MA0039.2	0.0466
MA0040.1	MA0040.1	0.9
MA0041.1	MA0041.1	0.449
MA0042.1	MA0042.1	0.963
MA0043.1	MA0043.1	0.0111
MA0046.1	MA0046.1	0.906
MA0047.2	MA0047.2	0.212
MA0048.1	MA0048.1	0.927
MA0050.1	MA0050.1	0.00104
MA0051.1	MA0051.1	0.0497
MA0052.1	MA0052.1	0.465
MA0055.1	MA0055.1	0.478
MA0057.1	MA0057.1	0.528
MA0058.1	MA0058.1	0.0698
MA0059.1	MA0059.1	0.687
MA0060.1	MA0060.1	0.0283
MA0061.1	MA0061.1	0.744
MA0062.2	MA0062.2	0.00101
MA0065.2	MA0065.2	0.798
MA0066.1	MA0066.1	0.876
MA0067.1	MA0067.1	0.077
MA0068.1	MA0068.1	0.14
MA0069.1	MA0069.1	0.117
MA0070.1	MA0070.1	0.587
MA0071.1	MA0071.1	0.719
MA0072.1	MA0072.1	0.96
MA0073.1	MA0073.1	0.333
MA0074.1	MA0074.1	0.954
MA0076.1	MA0076.1	0.0846
MA0077.1	MA0077.1	0.104
MA0078.1	MA0078.1	0.965
MA0079.2	MA0079.2	0.294
MA0080.2	MA0080.2	0.00805
MA0081.1	MA0081.1	0.135
MA0083.1	MA0083.1	0.768
MA0084.1	MA0084.1	0.443
MA0087.1	MA0087.1	0.476
MA0088.1	MA0088.1	0.622
MA0090.1	MA0090.1	0.369
MA0091.1	MA0091.1	0.0582
MA0092.1	MA0092.1	0.104
MA0093.1	MA0093.1	0.0904
MA0099.2	MA0099.2	8.60763e-4
MA0100.1	MA0100.1	0.888
MA0101.1	MA0101.1	0.662
MA0102.2	MA0102.2	0.0897
MA0103.1	MA0103.1	0.00288
MA0104.2	MA0104.2	0.0993
MA0105.1	MA0105.1	0.177
MA0106.1	MA0106.1	0.948
MA0107.1	MA0107.1	0.645
MA0108.2	MA0108.2	0.00632
MA0111.1	MA0111.1	0.311
MA0112.2	MA0112.2	7.03694e-4
MA0113.1	MA0113.1	0.172
MA0114.1	MA0114.1	0.671
MA0115.1	MA0115.1	0.39
MA0116.1	MA0116.1	0.0375
MA0117.1	MA0117.1	0.761
MA0119.1	MA0119.1	0.486
MA0122.1	MA0122.1	0.727
MA0124.1	MA0124.1	0.736
MA0125.1	MA0125.1	0.404
MA0131.1	MA0131.1	0.34
MA0135.1	MA0135.1	0.453
MA0136.1	MA0136.1	0.0534
MA0137.2	MA0137.2	0.109
MA0138.2	MA0138.2	0.282
MA0139.1	MA0139.1	0.644
MA0140.1	MA0140.1	0.194
MA0141.1	MA0141.1	0.674
MA0142.1	MA0142.1	0.25
MA0143.1	MA0143.1	0.905
MA0144.1	MA0144.1	0.315
MA0145.1	MA0145.1	0.03
MA0146.1	MA0146.1	0.745
MA0147.1	MA0147.1	0.21
MA0148.1	MA0148.1	0.0563
MA0149.1	MA0149.1	0.636
MA0150.1	MA0150.1	0.943
MA0152.1	MA0152.1	3.60193e-5
MA0153.1	MA0153.1	0.2
MA0154.1	MA0154.1	0.0269
MA0155.1	MA0155.1	0.268
MA0156.1	MA0156.1	0.0359
MA0157.1	MA0157.1	0.779
MA0159.1	MA0159.1	0.4
MA0160.1	MA0160.1	0.79
MA0162.1	MA0162.1	0.236
MA0163.1	MA0163.1	1.07245e-4
MA0164.1	MA0164.1	0.583
MA0258.1	MA0258.1	0.27
MA0259.1	MA0259.1	0.393

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11373

Novel motif	Logo	P-value
1	1	0.58
10	10	0.855
100	100	0.459
101	101	0.88
102	102	0.159
103	103	0.0134
104	104	0.449
105	105	0.0042
106	106	0.267
107	107	0.0195
108	108	0.975
109	109	0.675
11	11	0.379
110	110	0.641
111	111	0.826
112	112	0.34
113	113	0.495
114	114	0.23
115	115	0.859
116	116	0.119
117	117	0.396
118	118	0.238
119	119	0.867
12	12	0.944
120	120	0.886
121	121	0.412
122	122	0.2
123	123	0.121
124	124	0.59
125	125	0.815
126	126	0.892
127	127	0.959
128	128	0.0339
129	129	0.854
13	13	0.596
130	130	0.652
131	131	0.11
132	132	0.811
133	133	0.61
134	134	0.324
135	135	0.178
136	136	0.0595
137	137	0.896
138	138	0.562
139	139	0.456
14	14	0.482
140	140	0.55
141	141	0.366
142	142	0.301
143	143	0.466
144	144	0.336
145	145	0.862
146	146	0.234
147	147	0.815
148	148	0.487
149	149	0.00526
15	15	0.0848
150	150	0.57
151	151	0.415
152	152	0.277
153	153	0.819
154	154	0.776
155	155	0.223
156	156	0.985
157	157	0.755
158	158	0.053
159	159	0.292
16	16	0.0608
160	160	0.874
161	161	0.552
162	162	0.812
163	163	0.577
164	164	0.401
165	165	0.415
166	166	0.0163
167	167	0.86
168	168	0.63
169	169	0.0113
17	17	0.634
18	18	0.19
19	19	0.0294
2	2	0.156
20	20	0.0459
21	21	0.462
22	22	0.172
23	23	0.0557
24	24	0.775
25	25	0.731
26	26	0.998
27	27	0.248
28	28	0.92
29	29	0.924
3	3	0.461
30	30	0.263
31	31	0.783
32	32	1.81672e-7
33	33	0.834
34	34	0.166
35	35	0.501
36	36	0.687
37	37	0.539
38	38	0.563
39	39	0.275
4	4	0.448
40	40	0.969
41	41	0.717
42	42	0.929
43	43	0.326
44	44	0.734
45	45	0.306
46	46	0.254
47	47	0.939
48	48	0.586
49	49	0.546
5	5	0.144
50	50	0.898
51	51	0.586
52	52	0.336
53	53	0.787
54	54	0.591
55	55	0.356
56	56	0.882
57	57	0.643
58	58	0.916
59	59	0.0187
6	6	0.295
60	60	0.137
61	61	0.696
62	62	0.32
63	63	0.482
64	64	0.959
65	65	0.282
66	66	0.853
67	67	0.383
68	68	0.678
69	69	0.559
7	7	0.178
70	70	0.356
71	71	0.141
72	72	0.662
73	73	0.481
74	74	0.304
75	75	0.966
76	76	0.666
77	77	0.00168
78	78	0.714
79	79	0.00692
8	8	0.486
80	80	0.237
81	81	0.497
82	82	0.27
83	83	0.667
84	84	0.404
85	85	0.071
86	86	0.213
87	87	0.556
88	88	0.223
89	89	0.131
9	9	0.082
90	90	0.566
91	91	0.38
92	92	0.106
93	93	0.0589
94	94	0.41
95	95	0.413
96	96	0.247
97	97	0.0885
98	98	0.967
99	99	0.187

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11373

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000245 human chondrocyte re-differentiated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000037 (human chondrocyte sample)
0000245 (human chondrocyte re-differentiated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005779
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005779
+|accession_numbers=CAGE;DRX008204;DRR009076;DRZ000501;DRZ001886;DRZ011851;DRZ013236
+|accession_numbers_RNASeq=sRNA-Seq;DRX037191;DRR041557;DRZ007199
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.85!77.94!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.67!956.73!AEBP1;;chr12:24102576..24102623,-!p2@SOX5!1.65!43.74!SOX5;;chr7:44143978..44143989,+!p2@AEBP1!1.58!66.80!AEBP1;;chr7:44143997..44144008,+!p3@AEBP1!1.52!40.56!AEBP1;;chr1:170633348..170633399,+!p2@PRRX1!1.49!40.56!PRRX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.48!29.43!PKNOX2;;chr20:39317868..39317884,-!p1@MAFB!1.40!277.55!MAFB;;chr20:6748325..6748352,+!p1@BMP2!1.37!31.81!BMP2;;chr1:170632250..170632277,+!p7@PRRX1!1.37!22.27!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!1.30!19.09!KLF17;;chr12:54380404..54380433,+!p3@HOXC10!1.30!19.09!HOXC10;;chr9:96717629..96717644,-!p1@BARX1!1.25!16.70!BARX1;;chr17:48072574..48072597,-!p1@DLX3!1.21!15.11!DLX3;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.47!PITX1;;chr1:170633262..170633285,+!p3@PRRX1!1.17!15.91!PRRX1;;chr3:71630980..71631110,-!p3@FOXP1!1.16!46.92!FOXP1;;chr21:36260295..36260310,-!p3@RUNX1!1.16!21.47!RUNX1;;chr5:134369879..134369898,-!p2@PITX1!1.16!13.52!PITX1;;chr7:96654133..96654150,-!p1@DLX5!1.16!13.52!DLX5;;chr17:70117153..70117174,+!p1@SOX9!1.15!133.61!SOX9;;chr2:102091566..102091581,-!p1@RFX8!1.14!12.72!RFX8;;chr3:21792682..21792720,-!p1@ZNF385D!1.14!12.72!ZNF385D;;chr8:116681409..116681431,-!p2@TRPS1!1.12!33.40!TRPS1;;chr8:116680215..116680245,-!p6@TRPS1!1.12!19.09!TRPS1;;chr12:48298765..48298783,-!p2@VDR!1.11!24.65!VDR;;chr18:22932080..22932170,-!p1@ZNF521!1.10!49.31!ZNF521;;chrY:21906594..21906622,-!p1@KDM5D!1.08!11.13!KDM5D;;chr21:40032558..40032578,-!p5@ERG!1.08!11.13!ERG;;chr11:46299199..46299233,+!p1@CREB3L1!1.04!51.69!CREB3L1;;chr18:77155922..77155939,+!p1@NFATC1!1.04!27.84!NFATC1;;chr2:102091478..102091490,-!p3@RFX8!1.02!9.54!RFX8;;chr1:170632723..170632739,+!p8@PRRX1!1.02!9.54!PRRX1;;chr21:40033695..40033712,-!p6@ERG!1.02!9.54!ERG;;chr3:21792585..21792625,-!p2@ZNF385D!1.01!10.34!ZNF385D;;chr20:30433396..30433414,-!p1@FOXS1!0.99!8.75!FOXS1;;chr21:40032581..40032605,-!p4@ERG!0.99!8.75!ERG;;chr12:24103844..24103880,-!p3@SOX5!0.99!8.75!SOX5;;chr12:54379029..54379057,+!p2@HOXC10!0.99!8.75!HOXC10;;chr7:27196267..27196311,-!p1@HOXA7!0.99!8.75!HOXA7;;chr19:13134772..13134822,+!p2@NFIX!0.98!12.72!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.75!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.95!7.95!PRRX1;;chr21:40032884..40032915,-!p2@ERG!0.95!7.95!ERG;;chr8:116673894..116673913,-!p12@TRPS1!0.95!7.95!TRPS1;;chr12:54378923..54378966,+!p1@HOXC10!0.95!7.95!HOXC10;;chr21:36260343..36260402,-!p6@RUNX1!0.94!12.72!RUNX1;;chr9:16870659..16870675,-!p2@BNC2!0.94!9.54!BNC2;;chr3:5021268..5021282,+!p4@BHLHE40!0.93!15.91!BHLHE40;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.72!CREB3L1;;chr21:36259445..36259519,-!p4@RUNX1!0.91!20.68!RUNX1;;chr3:21792790..21792824,-!p4@ZNF385D!0.91!7.16!ZNF385D;;chr17:59529743..59529798,+!p1@TBX4!0.91!7.16!TBX4;;chr7:27205136..27205164,-!p1@HOXA9!0.91!7.16!HOXA9;;chr7:96654026..96654061,-!p2@DLX5!0.91!7.16!DLX5;;chr15:42749722..42749739,-!p2@ZFP106!0.90!12.72!ZFP106;;chr18:53068911..53068935,-!p4@TCF4!0.90!7.95!TCF4;;chr12:66218255..66218304,+!p3@HMGA2!0.89!19.09!HMGA2;;chr12:48298785..48298828,-!p1@VDR!0.87!35.79!VDR;;chr19:13134457..13134462,+!p5@NFIX!0.87!11.93!NFIX;;chr3:21792631..21792665,-!p3@ZNF385D!0.87!6.36!ZNF385D;;chr1:2985760..2985774,+!p1@PRDM16!0.87!6.36!PRDM16;;chr11:125034605..125034636,+!p2@PKNOX2!0.87!6.36!PKNOX2;;chr7:27205106..27205134,-!p2@HOXA9!0.87!6.36!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!0.87!6.36!HOXA11;;chr8:49833948..49833973,-!p2@SNAI2!0.85!41.35!SNAI2;;chr3:71631382..71631413,-!p20@FOXP1!0.85!7.16!FOXP1;;chr8:49833978..49833996,-!p1@SNAI2!0.84!130.43!SNAI2;;chr12:96588368..96588394,+!p3@ELK3!0.84!16.70!ELK3;;chr9:132427972..132428056,+!p1@PRRX2!0.84!7.95!PRRX2;;chr3:157823517..157823562,-!p1@SHOX2!0.84!6.36!SHOX2;;chr13:45010939..45011033,-!p1@TSC22D1!0.83!406.39!TSC22D1;;chr21:36260463..36260480,-!p9@RUNX1!0.83!7.95!RUNX1;;chr5:124082322..124082364,-!p1@ZNF608!0.82!15.11!ZNF608;;chr7:77428227..77428242,+!p3@PHTF2!0.82!8.75!PHTF2;;chr3:71631151..71631194,-!p15@FOXP1!0.82!6.36!FOXP1;;chr18:46475696..46475713,-!p1@SMAD7!0.82!6.36!SMAD7;;chr19:13135386..13135435,+!p4@NFIX!0.82!5.57!NFIX;;chr7:27196217..27196246,-!p2@HOXA7!0.82!5.57!HOXA7;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.57!HOXC9;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.27!SIX1;;chr7:77428149..77428220,+!p1@PHTF2!0.80!58.06!PHTF2;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.24!HMGA2;;chr21:36260980..36261011,-!p1@RUNX1!0.79!162.24!RUNX1;;chr12:53614115..53614154,-!p1@RARG!0.78!29.43!RARG;;chr6:1610293..1610310,+!p1@FOXC1!0.78!8.75!FOXC1;;chr7:101459263..101459310,+!p1@CUX1!0.77!316.52!CUX1;;chr20:48599506..48599526,+!p1@SNAI1!0.77!34.20!SNAI1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.63!ETV1;;chr7:27224795..27224840,-!p2@HOXA11!0.76!4.77!HOXA11;;chr16:31076332..31076388,-!p3@ZNF668!0.76!4.77!ZNF668;;chr18:22932004..22932021,-!p2@ZNF521!0.76!4.77!ZNF521;;chr9:132427883..132427951,+!p2@PRRX2!0.76!4.77!PRRX2;;chr1:170632683..170632696,+!p12@PRRX1!0.76!4.77!PRRX1;;chr21:40033882..40033887,-!p21@ERG!0.76!4.77!ERG;;chr10:119303078..119303169,+!p2@EMX2!0.76!4.77!EMX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.76!4.77!HOXC5;;chr19:13136130..13136165,+!p6@NFIX!0.75!6.36!NFIX;;chr3:5021113..5021180,+!p1@BHLHE40!0.74!347.54!BHLHE40;;chr10:64134120..64134183,+!p1@ZNF365!0.74!5.57!ZNF365;;chr5:88178983..88179012,-!p1@MEF2C!0.73!37.38!MEF2C;;chr10:64576105..64576133,-!p1@EGR2!0.73!9.54!EGR2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.73!4.77!GLIS1;;chr6:21593973..21593988,+!p1@SOX4!0.72!171.78!SOX4;;chr18:52989565..52989623,-!p9@TCF4!0.72!5.57!TCF4;;chr16:86600426..86600441,+!p1@FOXC2!0.71!11.13!FOXC2;;chr3:170076314..170076334,+!p2@SKIL!0.71!5.57!SKIL;;chr19:45908292..45908374,-!p1@PPP1R13L!0.70!40.56!PPP1R13L;;chr15:57511609..57511651,+!p2@TCF12!0.70!7.16!TCF12;;chr18:45935720..45935772,-!p1@ZBTB7C!0.70!3.98!ZBTB7C;;chr19:13136057..13136085,+!p11@NFIX!0.70!3.98!NFIX;;chr1:119530857..119530884,-!p4@TBX15!0.70!3.98!TBX15;;chr1:170632310..170632321,+!p15@PRRX1!0.70!3.98!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.70!3.98!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.70!3.98!PRRX1;;chr21:36260325..36260341,-!p14@RUNX1!0.70!3.98!RUNX1;;chr2:45236540..45236577,-!p1@SIX2!0.70!3.98!SIX2;;chr3:5022272..5022321,+!p7@BHLHE40!0.70!3.98!BHLHE40;;chr4:109088940..109089037,-!p4@LEF1!0.70!3.98!LEF1;;chr4:109089095..109089144,-!p6@LEF1!0.70!3.98!LEF1;;chr11:125034586..125034604,+!p3@PKNOX2!0.70!3.98!PKNOX2;;chr12:24103957..24103972,-!p5@SOX5!0.70!3.98!SOX5;;chr12:54402745..54402788,+!p1@HOXC8!0.70!3.98!HOXC8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.70!3.98!HOXC5;;chrY:2803415..2803468,+!p1@ZFY!0.70!3.98!ZFY;;chr13:41240717..41240735,-!p2@FOXO1!0.69!30.22!FOXO1;;chr7:137686763..137686784,-!p5@CREB3L2!0.69!7.16!CREB3L2;;chr14:62162285..62162296,+!p3@HIF1A!0.68!22.27!HIF1A;;chr6:21597765..21597779,+!p2@SOX4!0.67!34.20!SOX4;;chr10:114710098..114710130,+!p2@TCF7L2!0.66!31.02!TCF7L2;;chr2:239756739..239756755,+!p2@TWIST2!0.65!6.36!TWIST2;;chr7:101459230..101459243,+!p2@CUX1!0.64!19.09!CUX1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.64!7.95!ZNF395;;chr18:53257001..53257015,-!p5@TCF4!0.64!6.36!TCF4;;chr1:23885981..23886002,-!p1@ID3!0.63!681.56!ID3;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.36!ZNF454;;chr11:65667884..65667895,-!p2@FOSL1!0.62!14.32!FOSL1;;chr8:22550982..22550999,-!p1@EGR3!0.62!10.34!EGR3;;chr8:145159846..145159889,+!p6@MAF1!0.62!4.77!MAF1;;chr5:124082279..124082319,-!p3@ZNF608!0.62!3.98!ZNF608;;chr8:116681878..116681893,-!p15@TRPS1!0.62!3.18!TRPS1;;chr1:170632137..170632172,+!p10@PRRX1!0.62!3.18!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.62!3.18!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!0.62!3.18!LHX9;;chr21:38071430..38071456,+!p1@SIM2!0.62!3.18!SIM2;;chr2:45236579..45236596,-!p2@SIX2!0.62!3.18!SIX2;;chr12:54378984..54378996,+!p7@HOXC10!0.62!3.18!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.62!3.18!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.62!3.18!HOXC9;;chr12:54402790..54402805,+!p2@HOXC8!0.62!3.18!HOXC8;;chr12:66218923..66218934,+!p14@HMGA2!0.62!3.18!HMGA2;;chr9:130966497..130966541,-!p4@CIZ1!0.62!3.18!CIZ1;;chr12:54772960..54773015,-!p3@ZNF385A!0.61!17.50!ZNF385A;;chr19:44037546..44037594,+!p1@ZNF575!0.61!7.16!ZNF575;;chr15:100106670..100106697,+!p4@MEF2A!0.61!5.57!MEF2A;;chr5:321810..321877,+!p1@AHRR!0.60!11.13!AHRR;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.34!MSX1;;chr11:65430554..65430579,-!p3@RELA!0.60!8.75!RELA;;chr8:72756267..72756296,-!p4@MSC!0.60!4.77!MSC;;chr9:2158443..2158481,+!p2@SMARCA2!0.59!9.54!SMARCA2;;chr7:150946015..150946070,-!p3@SMARCD3!0.59!7.16!SMARCD3;;chr18:52989081..52989117,-!p7@TCF4!0.59!4.77!TCF4;;chr12:66218152..66218174,+!p10@HMGA2!0.59!3.18!HMGA2;;chr12:124873357..124873401,-!p1@NCOR2!0.58!39.76!NCOR2;;chr1:164528445..164528459,+!p2@PBX1!0.58!10.34!PBX1;;chr19:12203100..12203132,+!p1@ZNF788!0.58!6.36!ZNF788;;chr19:31840130..31840160,-!p2@TSHZ3!0.58!4.77!TSHZ3;;chr3:71632743..71632756,-!p16@FOXP1!0.58!4.77!FOXP1;;chr7:28725740..28725778,+!p1@CREB5!0.57!30.22!CREB5;;chr5:133450365..133450444,+!p1@TCF7!0.57!15.11!TCF7;;chr3:114343768..114343822,-!p1@ZBTB20!0.57!14.32!ZBTB20;;chr6:15246200..15246214,+!p2@JARID2!0.57!8.75!JARID2;;chr2:74229812..74229867,+!p1@TET3!0.57!7.95!TET3;;chr16:73093174..73093209,-!p3@ZFHX3!0.57!3.98!ZFHX3;;chr7:44143738..44143760,+!p4@AEBP1!0.57!3.18!AEBP1;;chr3:5022174..5022207,+!p8@BHLHE40!0.56!3.18!BHLHE40;;chr22:24093267..24093327,-!p1@ZNF70!0.55!21.47!ZNF70;;chr4:146859927..146860055,-!p1@ZNF827!0.55!19.09!ZNF827;;chrX:129402768..129402796,-!p2@ZNF280C!0.55!9.54!ZNF280C;;chr16:54964740..54964789,+!p1@IRX5!0.55!3.98!IRX5;;chr5:92919068..92919082,+!p5@NR2F1!0.55!3.18!NR2F1;;chr10:114709999..114710031,+!p1@TCF7L2!0.54!73.96!TCF7L2;;chr3:71114066..71114114,-!p1@FOXP1!0.54!63.62!FOXP1;;chr12:96588143..96588185,+!p1@ELK3!0.54!38.17!ELK3;;chr3:5021191..5021202,+!p3@BHLHE40!0.54!7.95!BHLHE40;;chr2:121493425..121493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KLF10;;chr8:106330515..106330525,+!p6@ZFPM2!0.25!0.80!ZFPM2;;chr8:106330848..106330859,+!p5@ZFPM2!0.25!0.80!ZFPM2;;chr8:22550700..22550717,-!p4@EGR3!0.25!0.80!EGR3;;chr8:65492433..65492440,+!p6@BHLHE22!0.25!0.80!BHLHE22;;chr8:65492520..65492554,+!p3@BHLHE22!0.25!0.80!BHLHE22;;chr8:72755987..72756002,-!p7@MSC!0.25!0.80!MSC;;chr8:72756251..72756262,-!p12@MSC!0.25!0.80!MSC;;chr8:72756380..72756427,-!p8@MSC!0.25!0.80!MSC;;chr8:81787006..81787031,-!p2@ZNF704!0.25!0.80!ZNF704;;chr9:115819058..115819082,-!p2@ZFP37!0.25!0.80!ZFP37;;chr14:75746705..75746720,+!p8@FOS!0.25!0.80!FOS;;chr14:75988831..75988847,+!p2@BATF!0.25!0.80!BATF;;chr15:31684663..31684717,+!p10@KLF13!0.25!0.80!KLF13;;chr15:35280823..35280852,-!p6@ZNF770!0.25!0.80!ZNF770;;chr15:57025732..57025743,-!p6@ZNF280D!0.25!0.80!ZNF280D;;chr15:57212102..57212120,+!p18@TCF12!0.25!0.80!TCF12;;chr15:66994718..66994729,+!p4@SMAD6!0.25!0.80!SMAD6;;chr15:66994885..66994904,+!p7@SMAD6!0.25!0.80!SMAD6;;chr15:67391010..67391046,+!p13@SMAD3!0.25!0.80!SMAD3;;chr15:80696666..80696700,+!p4@ARNT2!0.25!0.80!ARNT2;;chr16:1031762..1031781,+!p1@SOX8!0.25!0.80!SOX8;;chr16:29819558..29819572,+!p28@MAZ!0.25!0.80!MAZ;;chr16:30538376..30538386,-!p8@ZNF768!0.25!0.80!ZNF768;;chr16:54964899..54964914,+!p2@IRX5!0.25!0.80!IRX5;;chr16:73093210..73093223,-!p13@ZFHX3!0.25!0.80!ZFHX3;;chr16:79633883..79633892,-!p6@MAF!0.25!0.80!MAF;;chr16:79634581..79634592,-!p4@MAF!0.25!0.80!MAF;;chr16:86600458..86600461,+!p3@FOXC2!0.25!0.80!FOXC2;;chr17:40719286..40719299,+!p6@MLX!0.25!0.80!MLX;;chr17:46128217..46128243,+!p11@NFE2L1!0.25!0.80!NFE2L1;;chr17:46621146..46621180,-!p10@HOXB2!0.25!0.80!HOXB2;;chr17:48072063..48072074,-!p5@DLX3!0.25!0.80!DLX3;;chr17:48072421..48072424,-!p2@DLX3!0.25!0.80!DLX3;;chr17:5026405..5026422,-!p2@ZNF232!0.25!0.80!ZNF232;;chr17:79881433..79881452,-!p6@MAFG!0.25!0.80!MAFG;;chr18:19749504..19749515,+!p5@GATA6!0.25!0.80!GATA6;;chr18:42260840..42260860,+!p2@SETBP1!0.25!0.80!SETBP1;;chr18:42260920..42260951,+!p4@SETBP1!0.25!0.80!SETBP1;;chr18:46476499..46476507,-!p3@SMAD7!0.25!0.80!SMAD7;;chr18:52988952..52988965,-!p23@TCF4!0.25!0.80!TCF4;;chr18:52988979..52988993,-!p18@TCF4!0.25!0.80!TCF4;;chr18:52989415..52989429,-!p63@TCF4!0.25!0.80!TCF4;;chr18:53070846..53070902,-!p6@TCF4!0.25!0.80!TCF4;;chr18:53089493..53089517,-!p15@TCF4!0.25!0.80!TCF4;;chr18:53089521..53089533,-!p22@TCF4!0.25!0.80!TCF4;;chr18:53253297..53253322,-!p30@TCF4!0.25!0.80!TCF4;;chr18:53255323..53255332,-!p31@TCF4!0.25!0.80!TCF4;;chr18:53255349..53255358,-!p29@TCF4!0.25!0.80!TCF4;;chr19:12267492..12267505,-!p2@ZNF625,p3@ZNF20!0.25!0.80!ZNF625;;chr19:12595565..12595576,-!p3@ZNF709!0.25!0.80!ZNF709;;chr19:13135369..13135375,+!p21@NFIX!0.25!0.80!NFIX;;chr19:13135731..13135787,+!p10@NFIX!0.25!0.80!NFIX;;chr19:13135790..13135804,+!p26@NFIX!0.25!0.80!NFIX;;chr19:13135989..13136023,+!p18@NFIX!0.25!0.80!NFIX;;chr19:19976620..19976631,+!p4@ZNF253!0.25!0.80!ZNF253;;chr19:31840168..31840186,-!p6@TSHZ3!0.25!0.80!TSHZ3;;chr19:35454968..35454984,-!p3@ZNF792!0.25!0.80!ZNF792;;chr1:43148059..43148108,+!p1@YBX1!0.24!101.80!YBX1;;chr10:31608127..31608156,+!p1@ZEB1!0.24!28.63!ZEB1;;chr7:137686824..137686865,-!p2@CREB3L2!0.24!19.09!CREB3L2;;chr1:41157421..41157482,+!p2@NFYC!0.24!17.50!NFYC;;chr19:11708259..11708309,+!p1@ZNF627!0.24!15.11!ZNF627;;chr12:2986275..2986363,-!p1@FOXM1!0.24!15.11!FOXM1;;chr19:57901208..57901280,+!p1@ZNF548!0.24!11.93!ZNF548;;chr19:58427951..58427984,-!p1@ZNF417!0.24!10.34!ZNF417;;chr7:77428066..77428132,+!p2@PHTF2!0.24!9.54!PHTF2;;chr4:140005443..140005527,-!p2@ELF2!0.24!8.75!ELF2;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000138;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520re%2520diff%252c%2520donor2.CNhs11373.11339-117F7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520re%2520diff%252c%2520donor2.CNhs11373.11339-117F7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520re%2520diff%252c%2520donor2.CNhs11373.11339-117F7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520re%2520diff%252c%2520donor2.CNhs11373.11339-117F7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Chondrocyte%2520-%2520re%2520diff%252c%2520donor2.CNhs11373.11339-117F7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11339-117F7
 |is_a=EFO:0002091;;FF:0000245
 |is_obsolete=
+|library_id=CNhs11373
+|library_id_phase_based=2:CNhs11373
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11339
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.CTTGTA.11339
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11339
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.CTTGTA.11339
 |name=Chondrocyte - re diff, donor2
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11373,LSID771,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10012,,,
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@@ Line 62: / Line 82: @@
 |rna_tube_id=117F7
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10012.CTTGTA
 |sample_age=60
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 84: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11339-117F7;search_select_hide=table117:FF:11339-117F7
 }}

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FF:11339-117F7: Difference between revisions

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Latest revision as of 17:53, 4 June 2020

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