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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008148
|DRA_sample_Accession=CAGE@SAMD00004749
|accession_numbers=CAGE;DRX008256;DRR009128;DRZ000553;DRZ001938
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004749
|accession_numbers=CAGE;DRX008256;DRR009128;DRZ000553;DRZ001938;DRZ011903;DRZ013288
|accession_numbers_RNASeq=sRNA-Seq;DRX037198;DRR041564;DRZ007206
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.91!2267.58!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!1.87!224.77!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.62!68.00!TWIST2;;chr1:170632285..170632309,+!p1@PRRX1!1.58!41.55!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.54!298.45!HMGA2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.63!ZBED1;;chr1:170633348..170633399,+!p2@PRRX1!1.52!43.64!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!1.47!28.25!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.44!71.59!TWIST1;;chr19:46801639..46801699,+!p1@HIF3A!1.42!25.56!HIF3A;;chr12:66218598..66218645,+!p2@HMGA2!1.39!104.76!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.39!62.02!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.37!29.29!PRRX2;;chr11:65687362..65687436,+!p3@DRAP1!1.33!91.46!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!1.33!22.27!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.33!20.33!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.53!HOXC5;;chr15:57511609..57511651,+!p2@TCF12!1.28!29.89!TCF12;;chr9:132427883..132427951,+!p2@PRRX2!1.27!17.49!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.26!19.88!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.20!57.09!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!1.20!14.94!HMGA2;;chr12:54393880..54393962,+!p1@HOXC9!1.19!14.50!HOXC9;;chr17:59477233..59477263,+!p1@TBX2!1.18!43.04!TBX2;;chr12:66358080..66358094,+!p15@HMGA2!1.17!13.75!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.15!13.00!EBF2;;chr22:19748231..19748317,+!p1@TBX1!1.14!12.85!TBX1;;chr4:174450089..174450153,-!p2@HAND2!1.13!12.40!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.11!11.81!PRRX1;;chr12:66357214..66357233,+!p13@HMGA2!1.10!11.66!HMGA2;;chr2:102091566..102091581,-!p1@RFX8!1.10!11.51!RFX8;;chr12:54402745..54402788,+!p1@HOXC8!1.09!11.36!HOXC8;;chr11:65686732..65686756,+!p2@DRAP1!1.05!44.09!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!1.05!17.78!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.04!14.50!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.03!26.75!OSR1;;chr3:12329397..12329433,+!p2@PPARG!1.02!21.67!PPARG;;chr17:59477275..59477286,+!p3@TBX2!1.02!12.55!TBX2;;chr3:12330560..12330579,+!p1@PPARG!1.02!11.06!PPARG;;chr12:54380036..54380091,+!p4@HOXC10!1.02!9.42!HOXC10;;chr8:128748308..128748324,+!p2@MYC!1.01!263.03!MYC;;chr12:54378923..54378966,+!p1@HOXC10!1.01!9.27!HOXC10;;chr16:86600426..86600441,+!p1@FOXC2!0.99!21.97!FOXC2;;chr7:27205106..27205134,-!p2@HOXA9!0.97!8.37!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.46!TFAP2C;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.92!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.94!42.89!RARG;;chr7:19157043..19157088,-!p2@TWIST1!0.94!20.03!TWIST1;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.90!TBX18;;chr5:174151553..174151610,+!p1@MSX2!0.90!11.96!MSX2;;chr18:52969844..52969895,-!p27@TCF4!0.90!6.87!TCF4;;chr6:34204973..34204990,+!p4@HMGA1!0.89!94.30!HMGA1;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.69!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!0.89!11.21!FOXQ1;;chr3:141121847..141121868,+!p5@ZBTB38!0.89!10.46!ZBTB38;;chr11:65687222..65687240,+!p7@DRAP1!0.89!8.82!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.73!HAND2;;chr11:47279504..47279563,+!p1@NR1H3!0.88!15.54!NR1H3;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.27!HOXB7;;chr12:115122318..115122331,-!p2@TBX3!0.87!6.43!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!0.87!6.43!HOXD8;;chr5:2751785..2751808,-!p2@IRX2!0.87!6.43!IRX2;;chr14:24837368..24837401,+!p1@NFATC4!0.86!15.24!NFATC4;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.69!PPARG;;chr12:66218183..66218209,+!p4@HMGA2!0.85!12.11!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.12!HOXB7;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.47!TBX18;;chr6:34204672..34204692,+!p1@HMGA1!0.84!720.04!HMGA1;;chr7:44143925..44143970,+!p1@AEBP1!0.83!138.39!AEBP1;;chr11:65667846..65667868,-!p1@FOSL1!0.82!159.61!FOSL1;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.77!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.81!10.31!ZFP106;;chr17:46675420..46675465,-!p3@HOXB6!0.81!6.43!HOXB6;;chr17:46675558..46675577,-!p2@HOXB6!0.80!5.38!HOXB6;;chr12:54380404..54380433,+!p3@HOXC10!0.80!5.38!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.80!5.38!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!0.80!5.38!HOXC6;;chr11:65687158..65687216,+!p4@DRAP1!0.79!32.43!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.79!28.84!CREB3L1;;chr12:66218378..66218401,+!p6@HMGA2!0.79!8.37!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.32!FOXF2;;chr16:86600870..86600921,+!p2@FOXC2!0.79!5.23!FOXC2;;chr17:59477403..59477414,+!p4@TBX2!0.79!5.23!TBX2;;chr15:96874145..96874166,+!p7@NR2F2!0.78!10.16!NR2F2;;chr2:223163706..223163730,-!p1@PAX3!0.77!4.93!PAX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.77!4.93!HOXC5;;chr12:115121770..115121781,-!p4@TBX3!0.76!4.78!TBX3;;chr12:54379029..54379057,+!p2@HOXC10!0.76!4.78!HOXC10;;chr12:66218420..66218439,+!p12@HMGA2!0.76!4.78!HMGA2;;chr6:1389989..1390019,+!p2@FOXF2!0.76!4.78!FOXF2;;chr7:27192185..27192209,-!p1@HOXA3!0.76!4.78!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.76!4.78!HOXA9;;chr5:133450365..133450444,+!p1@TCF7!0.75!23.31!TCF7;;chr5:321810..321877,+!p1@AHRR!0.75!15.84!AHRR;;chr5:3595934..3595957,+!p2@IRX1!0.75!4.63!IRX1;;chr7:27224842..27224872,-!p1@HOXA11!0.75!4.63!HOXA11;;chr12:115121962..115121987,-!p1@TBX3!0.74!41.85!TBX3;;chr17:41622925..41622976,-!p3@ETV4!0.74!7.02!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.74!4.48!HOXB6;;chr5:174151612..174151633,+!p2@MSX2!0.74!4.48!MSX2;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.48!PRRX1;;chr17:61919985..61920012,-!p3@SMARCD2!0.73!11.66!SMARCD2;;chr3:141105705..141105770,+!p4@ZBTB38!0.73!5.38!ZBTB38;;chr8:49833978..49833996,-!p1@SNAI2!0.72!98.34!SNAI2;;chr7:14029283..14029311,-!p1@ETV1!0.72!25.26!ETV1;;chr15:96874244..96874259,+!p5@NR2F2!0.72!11.21!NR2F2;;chr11:113930425..113930471,+!p1@ZBTB16!0.72!6.43!ZBTB16;;chr12:66218443..66218461,+!p8@HMGA2!0.72!5.68!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!0.72!4.93!BNC1;;chr7:44143978..44143989,+!p2@AEBP1!0.71!8.07!AEBP1;;chr12:66218469..66218477,+!p16@HMGA2!0.71!4.18!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.47!TBX2;;chr15:96875041..96875052,+!p17@NR2F2!0.70!6.13!NR2F2;;chr1:170632762..170632786,+!p13@PRRX1!0.70!4.04!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!0.69!6.13!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.69!5.98!SATB2;;chr1:170632137..170632172,+!p10@PRRX1!0.69!3.89!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.89!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!0.69!3.89!HOXA11;;chr1:158979792..158979814,+!p2@IFI16!0.68!41.70!IFI16;;chr1:170633100..170633112,+!p19@PRRX1!0.68!3.74!PRRX1;;chr12:85673977..85674015,+!p1@ALX1!0.68!3.74!ALX1;;chr3:157823517..157823562,-!p1@SHOX2!0.67!4.04!SHOX2;;chr17:45810594..45810608,+!p1@TBX21!0.66!3.59!TBX21;;chr6:34205372..34205412,+!p5@HMGA1!0.65!20.33!HMGA1;;chr15:96876966..96877017,+!p12@NR2F2!0.65!5.23!NR2F2;;chr15:57511589..57511608,+!p4@TCF12!0.65!3.44!TCF12;;chr5:3595977..3595999,+!p1@IRX1!0.65!3.44!IRX1;;chr2:102091478..102091490,-!p3@RFX8!0.65!3.44!RFX8;;chr11:46299539..46299620,+!p2@CREB3L1!0.64!6.13!CREB3L1;;chr12:96588143..96588185,+!p1@ELK3!0.63!46.78!ELK3;;chr14:61116183..61116208,-!p1@SIX1!0.63!14.50!SIX1;;chr17:41623009..41623053,-!p4@ETV4!0.63!5.68!ETV4;;chr10:119303078..119303169,+!p2@EMX2!0.63!3.29!EMX2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.63!3.29!POU3F3;;chr2:119604456..119604501,-!p2@EN1!0.63!3.29!EN1;;chr2:175199697..175199706,+!p2@SP9!0.63!3.29!SP9;;chr3:138665937..138665968,-!p1@FOXL2!0.63!3.29!FOXL2;;chr3:138665969..138665993,-!p2@FOXL2!0.63!3.29!FOXL2;;chr1:170632310..170632321,+!p15@PRRX1!0.63!3.29!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!0.62!4.93!NFIX;;chrX:66763856..66763896,+!p1@AR!0.62!4.93!AR;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.14!PRRX1;;chr18:52969674..52969685,-!p24@TCF4!0.62!3.14!TCF4;;chr15:96874012..96874042,+!p2@NR2F2!0.61!32.88!NR2F2;;chr15:96873984..96873999,+!p3@NR2F2!0.60!26.30!NR2F2;;chr12:10875351..10875422,-!p4@CSDA!0.60!6.43!CSDA;;chr15:96874216..96874236,+!p13@NR2F2!0.60!5.08!NR2F2;;chr19:13135386..13135435,+!p4@NFIX!0.60!2.99!NFIX;;chr5:3595961..3595975,+!p3@IRX1!0.60!2.99!IRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.60!2.99!HOXA10;;chr1:170632028..170632043,+!p20@PRRX1!0.60!2.99!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.60!2.99!PRRX1;;chr2:119605214..119605230,-!p1@EN1!0.60!2.99!EN1;;chr2:19558327..19558334,-!p2@OSR1!0.60!2.99!OSR1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.59!14.20!LRRFIP2;;chr17:46691732..46691766,-!p4@HOXB8!0.58!2.84!HOXB8;;chr19:47523058..47523114,+!p1@NPAS1!0.58!2.84!NPAS1;;chr1:170632439..170632465,+!p11@PRRX1!0.58!2.84!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.80!TOX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.14!ZNF385D;;chr11:65688877..65688891,+!p13@DRAP1!0.57!2.69!DRAP1;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.69!FOXL1;;chr17:1958388..1958404,+!p1@HIC1!0.56!20.47!HIC1;;chr17:46622070..46622109,-!p1@HOXB2!0.56!6.73!HOXB2;;chr2:200323414..200323455,-!p1@SATB2!0.56!6.43!SATB2;;chr7:113726357..113726443,+!p1@FOXP2!0.56!5.08!FOXP2;;chr15:96869114..96869160,+!p11@NR2F2!0.56!3.89!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.56!3.29!DRAP1;;chr20:39946361..39946379,-!p2@ZHX3!0.55!9.12!ZHX3;;chr7:44143997..44144008,+!p3@AEBP1!0.55!3.44!AEBP1;;chr1:170632051..170632081,+!p16@PRRX1!0.55!2.54!PRRX1;;chr12:54402729..54402743,+!p3@HOXC8!0.55!2.54!HOXC8;;chr17:46675469..46675481,-!p4@HOXB6!0.55!2.54!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.55!2.54!HOXB8;;chr14:21566731..21566836,-!p1@ZNF219!0.54!33.18!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.54!22.27!ELK3;;chr11:65686952..65686975,+!p5@DRAP1!0.54!16.89!DRAP1;;chr11:113930291..113930339,+!p2@ZBTB16!0.54!4.48!ZBTB16;;chr7:28448965..28448994,+!p2@CREB5!0.53!10.16!CREB5;;chr9:110250697..110250738,-!p2@KLF4!0.53!2.99!KLF4;;chr7:14028488..14028516,-!p2@ETV1!0.53!2.69!ETV1;;chr7:27196267..27196311,-!p1@HOXA7!0.53!2.39!HOXA7;;chr11:63684602..63684664,-!p1@RCOR2!0.51!5.23!RCOR2;;chr11:47279248..47279264,+!p3@NR1H3!0.51!2.69!NR1H3;;chr10:119302645..119302712,+!p3@EMX2!0.51!2.24!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|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.91!2267.58!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!1.87!224.77!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.62!68.00!TWIST2;;chr1:170632285..170632309,+!p1@PRRX1!1.58!41.55!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.54!298.45!HMGA2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.63!ZBED1;;chr1:170633348..170633399,+!p2@PRRX1!1.52!43.64!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!1.47!28.25!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.44!71.59!TWIST1;;chr19:46801639..46801699,+!p1@HIF3A!1.42!25.56!HIF3A;;chr12:66218598..66218645,+!p2@HMGA2!1.39!104.76!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.39!62.02!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.37!29.29!PRRX2;;chr11:65687362..65687436,+!p3@DRAP1!1.33!91.46!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!1.33!22.27!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.33!20.33!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.53!HOXC5;;chr15:57511609..57511651,+!p2@TCF12!1.28!29.89!TCF12;;chr9:132427883..132427951,+!p2@PRRX2!1.27!17.49!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.26!19.88!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.20!57.09!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!1.20!14.94!HMGA2;;chr12:54393880..54393962,+!p1@HOXC9!1.19!14.50!HOXC9;;chr17:59477233..59477263,+!p1@TBX2!1.18!43.04!TBX2;;chr12:66358080..66358094,+!p15@HMGA2!1.17!13.75!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.15!13.00!EBF2;;chr22:19748231..19748317,+!p1@TBX1!1.14!12.85!TBX1;;chr4:174450089..174450153,-!p2@HAND2!1.13!12.40!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.11!11.81!PRRX1;;chr12:66357214..66357233,+!p13@HMGA2!1.10!11.66!HMGA2;;chr2:102091566..102091581,-!p1@RFX8!1.10!11.51!RFX8;;chr12:54402745..54402788,+!p1@HOXC8!1.09!11.36!HOXC8;;chr11:65686732..65686756,+!p2@DRAP1!1.05!44.09!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!1.05!17.78!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.04!14.50!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.03!26.75!OSR1;;chr3:12329397..12329433,+!p2@PPARG!1.02!21.67!PPARG;;chr17:59477275..59477286,+!p3@TBX2!1.02!12.55!TBX2;;chr3:12330560..12330579,+!p1@PPARG!1.02!11.06!PPARG;;chr12:54380036..54380091,+!p4@HOXC10!1.02!9.42!HOXC10;;chr8:128748308..128748324,+!p2@MYC!1.01!263.03!MYC;;chr12:54378923..54378966,+!p1@HOXC10!1.01!9.27!HOXC10;;chr16:86600426..86600441,+!p1@FOXC2!0.99!21.97!FOXC2;;chr7:27205106..27205134,-!p2@HOXA9!0.97!8.37!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.46!TFAP2C;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.92!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.94!42.89!RARG;;chr7:19157043..19157088,-!p2@TWIST1!0.94!20.03!TWIST1;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.90!TBX18;;chr5:174151553..174151610,+!p1@MSX2!0.90!11.96!MSX2;;chr18:52969844..52969895,-!p27@TCF4!0.90!6.87!TCF4;;chr6:34204973..34204990,+!p4@HMGA1!0.89!94.30!HMGA1;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.69!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!0.89!11.21!FOXQ1;;chr3:141121847..141121868,+!p5@ZBTB38!0.89!10.46!ZBTB38;;chr11:65687222..65687240,+!p7@DRAP1!0.89!8.82!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.73!HAND2;;chr11:47279504..47279563,+!p1@NR1H3!0.88!15.54!NR1H3;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.27!HOXB7;;chr12:115122318..115122331,-!p2@TBX3!0.87!6.43!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!0.87!6.43!HOXD8;;chr5:2751785..2751808,-!p2@IRX2!0.87!6.43!IRX2;;chr14:24837368..24837401,+!p1@NFATC4!0.86!15.24!NFATC4;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.69!PPARG;;chr12:66218183..66218209,+!p4@HMGA2!0.85!12.11!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.12!HOXB7;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.47!TBX18;;chr6:34204672..34204692,+!p1@HMGA1!0.84!720.04!HMGA1;;chr7:44143925..44143970,+!p1@AEBP1!0.83!138.39!AEBP1;;chr11:65667846..65667868,-!p1@FOSL1!0.82!159.61!FOSL1;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.77!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.81!10.31!ZFP106;;chr17:46675420..46675465,-!p3@HOXB6!0.81!6.43!HOXB6;;chr17:46675558..46675577,-!p2@HOXB6!0.80!5.38!HOXB6;;chr12:54380404..54380433,+!p3@HOXC10!0.80!5.38!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.80!5.38!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!0.80!5.38!HOXC6;;chr11:65687158..65687216,+!p4@DRAP1!0.79!32.43!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.79!28.84!CREB3L1;;chr12:66218378..66218401,+!p6@HMGA2!0.79!8.37!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.32!FOXF2;;chr16:86600870..86600921,+!p2@FOXC2!0.79!5.23!FOXC2;;chr17:59477403..59477414,+!p4@TBX2!0.79!5.23!TBX2;;chr15:96874145..96874166,+!p7@NR2F2!0.78!10.16!NR2F2;;chr2:223163706..223163730,-!p1@PAX3!0.77!4.93!PAX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.77!4.93!HOXC5;;chr12:115121770..115121781,-!p4@TBX3!0.76!4.78!TBX3;;chr12:54379029..54379057,+!p2@HOXC10!0.76!4.78!HOXC10;;chr12:66218420..66218439,+!p12@HMGA2!0.76!4.78!HMGA2;;chr6:1389989..1390019,+!p2@FOXF2!0.76!4.78!FOXF2;;chr7:27192185..27192209,-!p1@HOXA3!0.76!4.78!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.76!4.78!HOXA9;;chr5:133450365..133450444,+!p1@TCF7!0.75!23.31!TCF7;;chr5:321810..321877,+!p1@AHRR!0.75!15.84!AHRR;;chr5:3595934..3595957,+!p2@IRX1!0.75!4.63!IRX1;;chr7:27224842..27224872,-!p1@HOXA11!0.75!4.63!HOXA11;;chr12:115121962..115121987,-!p1@TBX3!0.74!41.85!TBX3;;chr17:41622925..41622976,-!p3@ETV4!0.74!7.02!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.74!4.48!HOXB6;;chr5:174151612..174151633,+!p2@MSX2!0.74!4.48!MSX2;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.48!PRRX1;;chr17:61919985..61920012,-!p3@SMARCD2!0.73!11.66!SMARCD2;;chr3:141105705..141105770,+!p4@ZBTB38!0.73!5.38!ZBTB38;;chr8:49833978..49833996,-!p1@SNAI2!0.72!98.34!SNAI2;;chr7:14029283..14029311,-!p1@ETV1!0.72!25.26!ETV1;;chr15:96874244..96874259,+!p5@NR2F2!0.72!11.21!NR2F2;;chr11:113930425..113930471,+!p1@ZBTB16!0.72!6.43!ZBTB16;;chr12:66218443..66218461,+!p8@HMGA2!0.72!5.68!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!0.72!4.93!BNC1;;chr7:44143978..44143989,+!p2@AEBP1!0.71!8.07!AEBP1;;chr12:66218469..66218477,+!p16@HMGA2!0.71!4.18!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.47!TBX2;;chr15:96875041..96875052,+!p17@NR2F2!0.70!6.13!NR2F2;;chr1:170632762..170632786,+!p13@PRRX1!0.70!4.04!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!0.69!6.13!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.69!5.98!SATB2;;chr1:170632137..170632172,+!p10@PRRX1!0.69!3.89!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.89!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!0.69!3.89!HOXA11;;chr1:158979792..158979814,+!p2@IFI16!0.68!41.70!IFI16;;chr1:170633100..170633112,+!p19@PRRX1!0.68!3.74!PRRX1;;chr12:85673977..85674015,+!p1@ALX1!0.68!3.74!ALX1;;chr3:157823517..157823562,-!p1@SHOX2!0.67!4.04!SHOX2;;chr17:45810594..45810608,+!p1@TBX21!0.66!3.59!TBX21;;chr6:34205372..34205412,+!p5@HMGA1!0.65!20.33!HMGA1;;chr15:96876966..96877017,+!p12@NR2F2!0.65!5.23!NR2F2;;chr15:57511589..57511608,+!p4@TCF12!0.65!3.44!TCF12;;chr5:3595977..3595999,+!p1@IRX1!0.65!3.44!IRX1;;chr2:102091478..102091490,-!p3@RFX8!0.65!3.44!RFX8;;chr11:46299539..46299620,+!p2@CREB3L1!0.64!6.13!CREB3L1;;chr12:96588143..96588185,+!p1@ELK3!0.63!46.78!ELK3;;chr14:61116183..61116208,-!p1@SIX1!0.63!14.50!SIX1;;chr17:41623009..41623053,-!p4@ETV4!0.63!5.68!ETV4;;chr10:119303078..119303169,+!p2@EMX2!0.63!3.29!EMX2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.63!3.29!POU3F3;;chr2:119604456..119604501,-!p2@EN1!0.63!3.29!EN1;;chr2:175199697..175199706,+!p2@SP9!0.63!3.29!SP9;;chr3:138665937..138665968,-!p1@FOXL2!0.63!3.29!FOXL2;;chr3:138665969..138665993,-!p2@FOXL2!0.63!3.29!FOXL2;;chr1:170632310..170632321,+!p15@PRRX1!0.63!3.29!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!0.62!4.93!NFIX;;chrX:66763856..66763896,+!p1@AR!0.62!4.93!AR;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.14!PRRX1;;chr18:52969674..52969685,-!p24@TCF4!0.62!3.14!TCF4;;chr15:96874012..96874042,+!p2@NR2F2!0.61!32.88!NR2F2;;chr15:96873984..96873999,+!p3@NR2F2!0.60!26.30!NR2F2;;chr12:10875351..10875422,-!p4@CSDA!0.60!6.43!CSDA;;chr15:96874216..96874236,+!p13@NR2F2!0.60!5.08!NR2F2;;chr19:13135386..13135435,+!p4@NFIX!0.60!2.99!NFIX;;chr5:3595961..3595975,+!p3@IRX1!0.60!2.99!IRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.60!2.99!HOXA10;;chr1:170632028..170632043,+!p20@PRRX1!0.60!2.99!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.60!2.99!PRRX1;;chr2:119605214..119605230,-!p1@EN1!0.60!2.99!EN1;;chr2:19558327..19558334,-!p2@OSR1!0.60!2.99!OSR1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.59!14.20!LRRFIP2;;chr17:46691732..46691766,-!p4@HOXB8!0.58!2.84!HOXB8;;chr19:47523058..47523114,+!p1@NPAS1!0.58!2.84!NPAS1;;chr1:170632439..170632465,+!p11@PRRX1!0.58!2.84!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.80!TOX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.14!ZNF385D;;chr11:65688877..65688891,+!p13@DRAP1!0.57!2.69!DRAP1;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.69!FOXL1;;chr17:1958388..1958404,+!p1@HIC1!0.56!20.47!HIC1;;chr17:46622070..46622109,-!p1@HOXB2!0.56!6.73!HOXB2;;chr2:200323414..200323455,-!p1@SATB2!0.56!6.43!SATB2;;chr7:113726357..113726443,+!p1@FOXP2!0.56!5.08!FOXP2;;chr15:96869114..96869160,+!p11@NR2F2!0.56!3.89!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.56!3.29!DRAP1;;chr20:39946361..39946379,-!p2@ZHX3!0.55!9.12!ZHX3;;chr7:44143997..44144008,+!p3@AEBP1!0.55!3.44!AEBP1;;chr1:170632051..170632081,+!p16@PRRX1!0.55!2.54!PRRX1;;chr12:54402729..54402743,+!p3@HOXC8!0.55!2.54!HOXC8;;chr17:46675469..46675481,-!p4@HOXB6!0.55!2.54!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.55!2.54!HOXB8;;chr14:21566731..21566836,-!p1@ZNF219!0.54!33.18!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.54!22.27!ELK3;;chr11:65686952..65686975,+!p5@DRAP1!0.54!16.89!DRAP1;;chr11:113930291..113930339,+!p2@ZBTB16!0.54!4.48!ZBTB16;;chr7:28448965..28448994,+!p2@CREB5!0.53!10.16!CREB5;;chr9:110250697..110250738,-!p2@KLF4!0.53!2.99!KLF4;;chr7:14028488..14028516,-!p2@ETV1!0.53!2.69!ETV1;;chr7:27196267..27196311,-!p1@HOXA7!0.53!2.39!HOXA7;;chr11:63684602..63684664,-!p1@RCOR2!0.51!5.23!RCOR2;;chr11:47279248..47279264,+!p3@NR1H3!0.51!2.69!NR1H3;;chr10:119302645..119302712,+!p3@EMX2!0.51!2.24!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg38.nobarcode.ctss.bed.gz
|id=FF:11418-118F5
|id=FF:11418-118F5
|is_a=EFO:0002091;;FF:0000062
|is_a=EFO:0002091;;FF:0000062
|is_obsolete=
|is_obsolete=
|library_id=CNhs12028
|library_id=CNhs12028
|library_id_phase_based=2:CNhs12028
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11418
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GTGGCC.11418
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11418
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GTGGCC.11418
|name=Fibroblast - Dermal, donor3
|name=Fibroblast - Dermal, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12028,LSID837,release011,COMPLETED
|profile_hcage=CNhs12028,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10012,,,
|profile_srnaseq=SRhi10012,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 82:
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|sample_category=primary cells
Line 88: Line 106:
|top_motifs=HES1:1.83834385974;ZNF238:1.73005566938;UFEwm:1.37930076922;NKX2-2,8:1.31157668937;RXR{A,B,G}:1.3030442279;GZF1:1.22264649942;HOX{A6,A7,B6,B7}:1.16661768855;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09891148849;FOXD3:1.08739397061;ALX4:1.08387883677;GATA4:1.01297382537;HOX{A4,D4}:0.980756526747;XBP1:0.925983725271;NKX2-1,4:0.919909976041;ESR1:0.919108132843;PAX1,9:0.914927285924;EN1,2:0.856523745071;NR3C1:0.812827134727;KLF4:0.724481508619;AIRE:0.707230534292;STAT5{A,B}:0.697651733004;TOPORS:0.687333096102;FOXL1:0.648636829191;PAX8:0.631172620173;ZIC1..3:0.617036240818;TFCP2:0.584740029935;ZNF423:0.555635632213;IKZF1:0.510384356006;GFI1B:0.449762565482;FOXQ1:0.439838046538;MTF1:0.429031149826;SPZ1:0.408382583488;LHX3,4:0.401815747965;TAL1_TCF{3,4,12}:0.384550883359;AR:0.378146543413;HOX{A5,B5}:0.371175195019;ONECUT1,2:0.358060240678;TEAD1:0.355976424769;EGR1..3:0.335348998909;TP53:0.33404055979;HAND1,2:0.332944442992;ZBTB16:0.330804369081;PDX1:0.321810833235;TFAP4:0.300941800122;ZNF384:0.297715321806;ZBTB6:0.27328913878;NKX3-1:0.266640858288;YY1:0.259190162315;NFE2L1:0.235140253245;TLX1..3_NFIC{dimer}:0.234531262124;ATF6:0.230457983766;TEF:0.229974356525;NR6A1:0.20921615841;EVI1:0.209197113821;NFATC1..3:0.20279791263;PRDM1:0.202611076091;TFDP1:0.187858260616;PAX4:0.161141336077;NKX6-1,2:0.158256426113;ARID5B:0.155425769454;GTF2I:0.15270680561;TFAP2B:0.134423074608;SRF:0.127208035519;FOS_FOS{B,L1}_JUN{B,D}:0.113976502873;bHLH_family:0.113908031159;HIC1:0.091308686339;GLI1..3:0.0712795062688;EBF1:0.0550508251984;MYFfamily:0.0512515938395;PRRX1,2:0.043745794635;RREB1:0.0435914662165;HNF4A_NR2F1,2:0.0404789980078;PAX5:0.0398856554945;MYBL2:0.0393744622556;AHR_ARNT_ARNT2:0.0367377279477;HNF1A:0.0277281522679;REST:0.022012853738;POU3F1..4:0.0215082819001;DMAP1_NCOR{1,2}_SMARC:0.0164051539271;BACH2:0.0145527291453;NFE2L2:-0.0015725094413;NANOG{mouse}:-0.00654327310481;HSF1,2:-0.0137466843737;NR1H4:-0.0220247117504;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.034486641582;HBP1_HMGB_SSRP1_UBTF:-0.043874285651;GTF2A1,2:-0.0495523249439;SOX17:-0.0541683031652;LEF1_TCF7_TCF7L1,2:-0.0813071595143;PATZ1:-0.0960408396521;HLF:-0.0979707990315;TFAP2{A,C}:-0.108017506714;ESRRA:-0.108320202349;MZF1:-0.144322121965;NR5A1,2:-0.152386029468;CEBPA,B_DDIT3:-0.154300947842;DBP:-0.157489423712;MTE{core}:-0.165670343206;FOSL2:-0.168867518067;PPARG:-0.180742152288;HIF1A:-0.192686048392;FOXO1,3,4:-0.197348984737;MEF2{A,B,C,D}:-0.209364622204;MAFB:-0.213285362765;NHLH1,2:-0.216024453968;STAT2,4,6:-0.2244904944;POU1F1:-0.228791387333;PAX3,7:-0.242646276373;GCM1,2:-0.243259584527;XCPE1{core}:-0.250885973221;CDC5L:-0.251000220886;NKX2-3_NKX2-5:-0.252950808153;TBP:-0.265921386285;NKX3-2:-0.271119625563;ADNP_IRX_SIX_ZHX:-0.274964871213;FOXM1:-0.283457927028;NFKB1_REL_RELA:-0.28997872855;TGIF1:-0.291304203536;NFE2:-0.300987426233;CREB1:-0.308246063396;ZFP161:-0.325657738898;MYB:-0.328525404078;ZNF143:-0.334222904124;ZNF148:-0.341985122877;MED-1{core}:-0.37534669809;NFIX:-0.38815381279;SOX5:-0.39029096314;IRF1,2:-0.397818525522;RUNX1..3:-0.409790511942;RFX1:-0.414329188878;BPTF:-0.445535606881;HMGA1,2:-0.451220891586;POU6F1:-0.468416238299;GFI1:-0.475146036035;T:-0.475306078041;SPI1:-0.480874408276;HMX1:-0.492599143083;SP1:-0.495927635594;ELK1,4_GABP{A,B1}:-0.509016230973;E2F1..5:-0.51213509997;POU2F1..3:-0.539958836744;HOXA9_MEIS1:-0.564128998327;PAX2:-0.5659411374;BREu{core}:-0.567466842379;FOX{I1,J2}:-0.572125947011;ALX1:-0.574417376484;MAZ:-0.582304938107;LMO2:-0.583645318142;NRF1:-0.587327989102;FOXP3:-0.588718216284;TBX4,5:-0.595686235535;ATF2:-0.596854766252;CRX:-0.612226976445;RXRA_VDR{dimer}:-0.62072658562;SPIB:-0.631496767088;SREBF1,2:-0.65025427242;ATF5_CREB3:-0.666532813891;RFX2..5_RFXANK_RFXAP:-0.683642347635;ETS1,2:-0.69078754465;FOXP1:-0.694820547213;IKZF2:-0.696402497061;CUX2:-0.699110541502;ELF1,2,4:-0.700609089679;CDX1,2,4:-0.709971904345;FOX{D1,D2}:-0.711385536418;FOXA2:-0.731190918995;GATA6:-0.731776781124;IRF7:-0.752599896807;PITX1..3:-0.773490559934;SNAI1..3:-0.777230912979;RBPJ:-0.781296526238;OCT4_SOX2{dimer}:-0.803640007975;ATF4:-0.804361160274;NFIL3:-0.807754445124;ZEB1:-0.821129053397;PBX1:-0.823507779524;SMAD1..7,9:-0.829848355057;STAT1,3:-0.868120179007;TLX2:-0.924388340378;JUN:-0.949963827968;POU5F1:-0.988088922672;NFY{A,B,C}:-0.995930118986;MYOD1:-1.03261250276;SOX{8,9,10}:-1.06346600878;RORA:-1.1382094483;FOXN1:-1.15109319283;PAX6:-1.15485233455;VSX1,2:-1.23720071692;NANOG:-1.42084514199;SOX2:-1.44064563407;FOX{F1,F2,J1}:-1.55461535756;EP300:-1.68743867128
|top_motifs=HES1:1.83834385974;ZNF238:1.73005566938;UFEwm:1.37930076922;NKX2-2,8:1.31157668937;RXR{A,B,G}:1.3030442279;GZF1:1.22264649942;HOX{A6,A7,B6,B7}:1.16661768855;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09891148849;FOXD3:1.08739397061;ALX4:1.08387883677;GATA4:1.01297382537;HOX{A4,D4}:0.980756526747;XBP1:0.925983725271;NKX2-1,4:0.919909976041;ESR1:0.919108132843;PAX1,9:0.914927285924;EN1,2:0.856523745071;NR3C1:0.812827134727;KLF4:0.724481508619;AIRE:0.707230534292;STAT5{A,B}:0.697651733004;TOPORS:0.687333096102;FOXL1:0.648636829191;PAX8:0.631172620173;ZIC1..3:0.617036240818;TFCP2:0.584740029935;ZNF423:0.555635632213;IKZF1:0.510384356006;GFI1B:0.449762565482;FOXQ1:0.439838046538;MTF1:0.429031149826;SPZ1:0.408382583488;LHX3,4:0.401815747965;TAL1_TCF{3,4,12}:0.384550883359;AR:0.378146543413;HOX{A5,B5}:0.371175195019;ONECUT1,2:0.358060240678;TEAD1:0.355976424769;EGR1..3:0.335348998909;TP53:0.33404055979;HAND1,2:0.332944442992;ZBTB16:0.330804369081;PDX1:0.321810833235;TFAP4:0.300941800122;ZNF384:0.297715321806;ZBTB6:0.27328913878;NKX3-1:0.266640858288;YY1:0.259190162315;NFE2L1:0.235140253245;TLX1..3_NFIC{dimer}:0.234531262124;ATF6:0.230457983766;TEF:0.229974356525;NR6A1:0.20921615841;EVI1:0.209197113821;NFATC1..3:0.20279791263;PRDM1:0.202611076091;TFDP1:0.187858260616;PAX4:0.161141336077;NKX6-1,2:0.158256426113;ARID5B:0.155425769454;GTF2I:0.15270680561;TFAP2B:0.134423074608;SRF:0.127208035519;FOS_FOS{B,L1}_JUN{B,D}:0.113976502873;bHLH_family:0.113908031159;HIC1:0.091308686339;GLI1..3:0.0712795062688;EBF1:0.0550508251984;MYFfamily:0.0512515938395;PRRX1,2:0.043745794635;RREB1:0.0435914662165;HNF4A_NR2F1,2:0.0404789980078;PAX5:0.0398856554945;MYBL2:0.0393744622556;AHR_ARNT_ARNT2:0.0367377279477;HNF1A:0.0277281522679;REST:0.022012853738;POU3F1..4:0.0215082819001;DMAP1_NCOR{1,2}_SMARC:0.0164051539271;BACH2:0.0145527291453;NFE2L2:-0.0015725094413;NANOG{mouse}:-0.00654327310481;HSF1,2:-0.0137466843737;NR1H4:-0.0220247117504;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.034486641582;HBP1_HMGB_SSRP1_UBTF:-0.043874285651;GTF2A1,2:-0.0495523249439;SOX17:-0.0541683031652;LEF1_TCF7_TCF7L1,2:-0.0813071595143;PATZ1:-0.0960408396521;HLF:-0.0979707990315;TFAP2{A,C}:-0.108017506714;ESRRA:-0.108320202349;MZF1:-0.144322121965;NR5A1,2:-0.152386029468;CEBPA,B_DDIT3:-0.154300947842;DBP:-0.157489423712;MTE{core}:-0.165670343206;FOSL2:-0.168867518067;PPARG:-0.180742152288;HIF1A:-0.192686048392;FOXO1,3,4:-0.197348984737;MEF2{A,B,C,D}:-0.209364622204;MAFB:-0.213285362765;NHLH1,2:-0.216024453968;STAT2,4,6:-0.2244904944;POU1F1:-0.228791387333;PAX3,7:-0.242646276373;GCM1,2:-0.243259584527;XCPE1{core}:-0.250885973221;CDC5L:-0.251000220886;NKX2-3_NKX2-5:-0.252950808153;TBP:-0.265921386285;NKX3-2:-0.271119625563;ADNP_IRX_SIX_ZHX:-0.274964871213;FOXM1:-0.283457927028;NFKB1_REL_RELA:-0.28997872855;TGIF1:-0.291304203536;NFE2:-0.300987426233;CREB1:-0.308246063396;ZFP161:-0.325657738898;MYB:-0.328525404078;ZNF143:-0.334222904124;ZNF148:-0.341985122877;MED-1{core}:-0.37534669809;NFIX:-0.38815381279;SOX5:-0.39029096314;IRF1,2:-0.397818525522;RUNX1..3:-0.409790511942;RFX1:-0.414329188878;BPTF:-0.445535606881;HMGA1,2:-0.451220891586;POU6F1:-0.468416238299;GFI1:-0.475146036035;T:-0.475306078041;SPI1:-0.480874408276;HMX1:-0.492599143083;SP1:-0.495927635594;ELK1,4_GABP{A,B1}:-0.509016230973;E2F1..5:-0.51213509997;POU2F1..3:-0.539958836744;HOXA9_MEIS1:-0.564128998327;PAX2:-0.5659411374;BREu{core}:-0.567466842379;FOX{I1,J2}:-0.572125947011;ALX1:-0.574417376484;MAZ:-0.582304938107;LMO2:-0.583645318142;NRF1:-0.587327989102;FOXP3:-0.588718216284;TBX4,5:-0.595686235535;ATF2:-0.596854766252;CRX:-0.612226976445;RXRA_VDR{dimer}:-0.62072658562;SPIB:-0.631496767088;SREBF1,2:-0.65025427242;ATF5_CREB3:-0.666532813891;RFX2..5_RFXANK_RFXAP:-0.683642347635;ETS1,2:-0.69078754465;FOXP1:-0.694820547213;IKZF2:-0.696402497061;CUX2:-0.699110541502;ELF1,2,4:-0.700609089679;CDX1,2,4:-0.709971904345;FOX{D1,D2}:-0.711385536418;FOXA2:-0.731190918995;GATA6:-0.731776781124;IRF7:-0.752599896807;PITX1..3:-0.773490559934;SNAI1..3:-0.777230912979;RBPJ:-0.781296526238;OCT4_SOX2{dimer}:-0.803640007975;ATF4:-0.804361160274;NFIL3:-0.807754445124;ZEB1:-0.821129053397;PBX1:-0.823507779524;SMAD1..7,9:-0.829848355057;STAT1,3:-0.868120179007;TLX2:-0.924388340378;JUN:-0.949963827968;POU5F1:-0.988088922672;NFY{A,B,C}:-0.995930118986;MYOD1:-1.03261250276;SOX{8,9,10}:-1.06346600878;RORA:-1.1382094483;FOXN1:-1.15109319283;PAX6:-1.15485233455;VSX1,2:-1.23720071692;NANOG:-1.42084514199;SOX2:-1.44064563407;FOX{F1,F2,J1}:-1.55461535756;EP300:-1.68743867128
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11418-118F5;search_select_hide=table117:FF:11418-118F5
}}
}}

Latest revision as of 17:59, 4 June 2020

Name:Fibroblast - Dermal, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12028
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage41 years old adult
sexfemale
age41
cell typefibroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1375
catalog numberCA106-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004749
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12028 CAGE DRX008256 DRR009128
Accession ID Hg19

Library idBAMCTSS
CNhs12028 DRZ000553 DRZ001938
Accession ID Hg38

Library idBAMCTSS
CNhs12028 DRZ011903 DRZ013288
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004749
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.GTGGCC sRNA-Seq DRX037198 DRR041564
Accession ID Hg19

Library idBAMCTSS
SRhi10012.GTGGCC DRZ007206


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.27
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.104
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.143
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0273
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.234
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.186
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0605
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.727
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0447
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.323
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.053
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.172
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0223
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0955
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0343
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0537
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.129
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.182
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.204
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0605
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0605
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.161
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.625
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.204
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.054
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.844
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12028

Jaspar motifP-value
MA0002.20.738
MA0003.10.356
MA0004.10.51
MA0006.10.8
MA0007.10.0309
MA0009.10.224
MA0014.10.922
MA0017.10.402
MA0018.22.49176e-6
MA0019.10.708
MA0024.10.00138
MA0025.17.52601e-5
MA0027.10.659
MA0028.10.0259
MA0029.10.71
MA0030.10.0171
MA0031.10.163
MA0035.20.0891
MA0038.11.89264e-4
MA0039.20.0778
MA0040.10.549
MA0041.10.732
MA0042.10.399
MA0043.12.58939e-8
MA0046.10.229
MA0047.20.577
MA0048.10.0386
MA0050.15.95606e-4
MA0051.10.0435
MA0052.10.466
MA0055.10.324
MA0057.10.296
MA0058.10.542
MA0059.10.0386
MA0060.14.74086e-9
MA0061.10.813
MA0062.27.153e-8
MA0065.20.179
MA0066.10.0516
MA0067.10.0252
MA0068.10.0292
MA0069.10.488
MA0070.10.707
MA0071.10.174
MA0072.10.604
MA0073.10.644
MA0074.10.172
MA0076.17.57305e-4
MA0077.10.287
MA0078.10.94
MA0079.20.566
MA0080.24.05485e-7
MA0081.10.0238
MA0083.10.253
MA0084.10.422
MA0087.10.489
MA0088.10.106
MA0090.10.177
MA0091.10.216
MA0092.10.424
MA0093.10.62
MA0099.20.913
MA0100.10.511
MA0101.10.0168
MA0102.20.103
MA0103.10.187
MA0104.20.232
MA0105.10.0884
MA0106.10.0138
MA0107.10.0204
MA0108.20.312
MA0111.10.63
MA0112.20.00728
MA0113.10.126
MA0114.10.443
MA0115.10.892
MA0116.10.151
MA0117.10.305
MA0119.10.0325
MA0122.10.284
MA0124.10.917
MA0125.10.0369
MA0131.10.314
MA0135.10.688
MA0136.11.8344e-8
MA0137.20.0843
MA0138.20.376
MA0139.10.851
MA0140.10.179
MA0141.10.0248
MA0142.10.881
MA0143.10.412
MA0144.10.808
MA0145.10.789
MA0146.10.179
MA0147.10.129
MA0148.10.75
MA0149.10.206
MA0150.10.33
MA0152.10.273
MA0153.10.364
MA0154.10.548
MA0155.10.576
MA0156.11.57815e-8
MA0157.10.342
MA0159.10.665
MA0160.10.632
MA0162.10.258
MA0163.10.00134
MA0164.10.797
MA0258.10.0963
MA0259.10.652



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12028

Novel motifP-value
10.198
100.0474
1000.312
1010.911
1020.686
1030.495
1040.625
1050.0953
1060.044
1070.0637
1080.0985
1090.101
110.177
1100.101
1110.0512
1120.206
1130.015
1140.0762
1150.0801
1160.0453
1170.207
1180.259
1190.518
120.443
1200.0775
1210.519
1220.0431
1230.158
1240.499
1250.174
1260.651
1270.609
1280.0456
1290.565
130.575
1300.665
1310.607
1320.298
1330.381
1340.4
1350.385
1360.931
1370.227
1380.899
1390.518
140.145
1400.382
1410.684
1420.388
1430.195
1440.708
1450.0582
1460.711
1470.0555
1480.0394
1490.241
150.687
1500.137
1510.439
1520.0166
1530.269
1540.667
1550.234
1560.268
1570.745
1580.13
1590.491
160.0401
1600.032
1610.627
1620.538
1630.955
1640.0233
1650.678
1660.842
1670.45
1680.599
1690.023
170.291
180.0858
190.0312
20.587
200.667
210.00775
220.185
230.666
240.794
250.457
260.0995
270.235
280.179
290.119
30.242
300.987
310.608
322.18237e-5
330.397
340.806
350.628
360.233
370.0182
380.909
390.236
40.396
400.569
410.366
420.944
430.2
440.0218
450.754
460.0993
470.702
480.445
490.246
50.877
500.41
510.522
520.675
530.314
540.626
550.195
560.621
570.359
580.631
590.189
60.969
600.611
610.876
620.75
630.17
640.769
650.359
660.441
670.573
680.255
690.245
70.431
700.0969
710.129
720.537
730.00919
740.0176
750.115
760.602
770.0869
780.892
790.0345
80.00562
800.0212
810.422
820.732
830.191
840.425
850.135
860.942
870.139
880.245
890.303
90.421
900.598
910.365
920.107
930.995
940.315
950.0266
960.284
970.639
980.318
990.0151



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12028


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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