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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004831
|accession_numbers=CAGE;DRX008407;DRR009279;DRZ000704;DRZ002089;DRZ012054;DRZ013439
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.20!158.29!HOXC5;;chr12:54402745..54402788,+!p1@HOXC8!1.86!71.95!HOXC8;;chr1:170632285..170632309,+!p1@PRRX1!1.67!51.85!PRRX1;;chr18:53068911..53068935,-!p4@TCF4!1.63!47.14!TCF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.00!ZBED1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.48!29.52!HOXC5;;chr9:132427883..132427951,+!p2@PRRX2!1.45!27.29!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.42!68.48!OSR1;;chr19:47523058..47523114,+!p1@NPAS1!1.34!21.09!NPAS1;;chr14:62162258..62162269,+!p2@HIF1A!1.26!162.51!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!1.26!88.57!HIF1A;;chr9:132427972..132428056,+!p1@PRRX2!1.26!22.33!PRRX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.25!63.02!TSC22D3;;chr8:72756637..72756664,-!p3@MSC!1.25!19.10!MSC;;chr12:54402790..54402805,+!p2@HOXC8!1.22!15.63!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!1.21!15.13!HOXC9;;chr1:170633262..170633285,+!p3@PRRX1!1.20!17.12!PRRX1;;chr1:23885981..23886002,-!p1@ID3!1.18!2436.67!ID3;;chr8:25902876..25902936,-!p1@EBF2!1.18!14.14!EBF2;;chr12:54402729..54402743,+!p3@HOXC8!1.17!13.89!HOXC8;;chr1:170633058..170633084,+!p5@PRRX1!1.16!13.40!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!1.14!80.88!SNAI2;;chr2:119605214..119605230,-!p1@EN1!1.14!12.90!EN1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.65!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.12!63.52!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.32!FOXD1;;chr19:50432453..50432468,+!p1@ATF5!1.11!656.00!ATF5;;chr8:72756667..72756736,-!p2@MSC!1.11!18.61!MSC;;chr10:63809013..63809041,+!p3@ARID5B!1.10!64.76!ARID5B;;chr4:174450089..174450153,-!p2@HAND2!1.10!11.66!HAND2;;chr11:46299539..46299620,+!p2@CREB3L1!1.08!18.86!CREB3L1;;chr2:239756671..239756732,+!p1@TWIST2!1.07!34.98!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.06!14.39!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.42!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!1.06!10.42!HOXD8;;chr4:4861385..4861398,+!p1@MSX1!1.05!30.77!MSX1;;chr1:170632477..170632506,+!p6@PRRX1!1.04!9.92!PRRX1;;chr12:54410948..54410992,+!p3@HOXC5!1.04!9.92!HOXC5;;chr2:8822176..8822196,+!p1@ID2!1.03!1375.01!ID2;;chr18:19749386..19749404,+!p2@GATA6!1.03!13.89!GATA6;;chr12:54394309..54394336,+!p2@HOXC9!1.03!9.68!HOXC9;;chr19:13134772..13134822,+!p2@NFIX!1.01!13.89!NFIX;;chr7:27205136..27205164,-!p1@HOXA9!1.00!8.93!HOXA9;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.13!TWIST2;;chr6:144329384..144329405,-!p1@PLAGL1!0.98!101.72!PLAGL1;;chr2:119604456..119604501,-!p2@EN1!0.97!8.44!EN1;;chr1:170632683..170632696,+!p12@PRRX1!0.96!8.19!PRRX1;;chr15:96874145..96874166,+!p7@NR2F2!0.95!15.38!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!0.94!10.92!HOXB7;;chr14:95236551..95236576,-!p2@GSC!0.94!7.69!GSC;;chr1:170632250..170632277,+!p7@PRRX1!0.94!7.69!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.94!7.69!FOXS1;;chr2:85981027..85981047,+!p8@ATOH8!0.94!7.69!ATOH8;;chr4:111558135..111558198,-!p2@PITX2!0.94!7.69!PITX2;;chr8:72756213..72756243,-!p5@MSC!0.92!9.68!MSC;;chr8:72756267..72756296,-!p4@MSC!0.90!10.42!MSC;;chr15:96876966..96877017,+!p12@NR2F2!0.90!10.17!NR2F2;;chr6:28321909..28321965,-!p3@ZNF323!0.90!6.95!ZNF323;;chr7:27192185..27192209,-!p1@HOXA3!0.90!6.95!HOXA3;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.70!HAND2;;chr15:96874244..96874259,+!p5@NR2F2!0.88!16.62!NR2F2;;chr3:157823517..157823562,-!p1@SHOX2!0.88!7.20!SHOX2;;chr13:37494275..37494304,-!p2@SMAD9!0.87!6.45!SMAD9;;chr8:49833978..49833996,-!p1@SNAI2!0.86!136.96!SNAI2;;chr10:77161504..77161530,-!p1@ZNF503!0.86!89.07!ZNF503;;chr18:19749541..19749557,+!p1@GATA6!0.86!20.59!GATA6;;chrX:106960221..106960236,-!p3@TSC22D3!0.85!17.62!TSC22D3;;chr7:150946015..150946070,-!p3@SMARCD3!0.85!13.65!SMARCD3;;chr14:62203595..62203676,+!p4@HIF1A!0.85!11.91!HIF1A;;chr12:80085061..80085119,-!p6@PAWR!0.85!9.92!PAWR;;chr3:170076314..170076334,+!p2@SKIL!0.85!8.19!SKIL;;chr8:72756063..72756125,-!p1@MSC!0.84!12.65!MSC;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.95!EBF3;;chr10:119303078..119303169,+!p2@EMX2!0.83!5.71!EMX2;;chr12:54447686..54447704,+!p5@HOXC4!0.83!5.71!HOXC4;;chr10:63809077..63809089,+!p5@ARID5B!0.82!12.65!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.81!79.89!ARID5B;;chr17:38498594..38498661,+!p2@RARA!0.81!19.60!RARA;;chr12:48298765..48298783,-!p2@VDR!0.81!11.91!VDR;;chr2:85980951..85981004,+!p1@ATOH8!0.81!9.18!ATOH8;;chr14:95236440..95236465,-!p1@GSC!0.81!5.46!GSC;;chr7:27205106..27205134,-!p2@HOXA9!0.81!5.46!HOXA9;;chr13:45151259..45151326,-!p2@TSC22D1!0.79!33.49!TSC22D1;;chr6:28321971..28321995,-!p1@ZNF323!0.79!5.21!ZNF323;;chr1:75600067..75600094,+!p2@LHX8!0.79!5.21!LHX8;;chr12:57914286..57914304,-!p1@DDIT3!0.78!201.22!DDIT3;;chr14:75894714..75894733,+!p1@JDP2!0.78!154.57!JDP2;;chr15:96869255..96869291,+!p6@NR2F2!0.78!9.68!NR2F2;;chr5:158526459..158526481,-!p2@EBF1!0.78!6.95!EBF1;;chr5:2751762..2751784,-!p1@IRX2!0.78!4.96!IRX2;;chr7:1577899..1577943,+!p3@MAFK!0.78!4.96!MAFK;;chr10:114889016..114889037,+!p15@TCF7L2!0.78!4.96!TCF7L2;;chr17:46682321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|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.20!158.29!HOXC5;;chr12:54402745..54402788,+!p1@HOXC8!1.86!71.95!HOXC8;;chr1:170632285..170632309,+!p1@PRRX1!1.67!51.85!PRRX1;;chr18:53068911..53068935,-!p4@TCF4!1.63!47.14!TCF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.00!ZBED1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.48!29.52!HOXC5;;chr9:132427883..132427951,+!p2@PRRX2!1.45!27.29!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.42!68.48!OSR1;;chr19:47523058..47523114,+!p1@NPAS1!1.34!21.09!NPAS1;;chr14:62162258..62162269,+!p2@HIF1A!1.26!162.51!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!1.26!88.57!HIF1A;;chr9:132427972..132428056,+!p1@PRRX2!1.26!22.33!PRRX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.25!63.02!TSC22D3;;chr8:72756637..72756664,-!p3@MSC!1.25!19.10!MSC;;chr12:54402790..54402805,+!p2@HOXC8!1.22!15.63!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!1.21!15.13!HOXC9;;chr1:170633262..170633285,+!p3@PRRX1!1.20!17.12!PRRX1;;chr1:23885981..23886002,-!p1@ID3!1.18!2436.67!ID3;;chr8:25902876..25902936,-!p1@EBF2!1.18!14.14!EBF2;;chr12:54402729..54402743,+!p3@HOXC8!1.17!13.89!HOXC8;;chr1:170633058..170633084,+!p5@PRRX1!1.16!13.40!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!1.14!80.88!SNAI2;;chr2:119605214..119605230,-!p1@EN1!1.14!12.90!EN1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.65!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.12!63.52!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.32!FOXD1;;chr19:50432453..50432468,+!p1@ATF5!1.11!656.00!ATF5;;chr8:72756667..72756736,-!p2@MSC!1.11!18.61!MSC;;chr10:63809013..63809041,+!p3@ARID5B!1.10!64.76!ARID5B;;chr4:174450089..174450153,-!p2@HAND2!1.10!11.66!HAND2;;chr11:46299539..46299620,+!p2@CREB3L1!1.08!18.86!CREB3L1;;chr2:239756671..239756732,+!p1@TWIST2!1.07!34.98!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.06!14.39!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.42!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!1.06!10.42!HOXD8;;chr4:4861385..4861398,+!p1@MSX1!1.05!30.77!MSX1;;chr1:170632477..170632506,+!p6@PRRX1!1.04!9.92!PRRX1;;chr12:54410948..54410992,+!p3@HOXC5!1.04!9.92!HOXC5;;chr2:8822176..8822196,+!p1@ID2!1.03!1375.01!ID2;;chr18:19749386..19749404,+!p2@GATA6!1.03!13.89!GATA6;;chr12:54394309..54394336,+!p2@HOXC9!1.03!9.68!HOXC9;;chr19:13134772..13134822,+!p2@NFIX!1.01!13.89!NFIX;;chr7:27205136..27205164,-!p1@HOXA9!1.00!8.93!HOXA9;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.13!TWIST2;;chr6:144329384..144329405,-!p1@PLAGL1!0.98!101.72!PLAGL1;;chr2:119604456..119604501,-!p2@EN1!0.97!8.44!EN1;;chr1:170632683..170632696,+!p12@PRRX1!0.96!8.19!PRRX1;;chr15:96874145..96874166,+!p7@NR2F2!0.95!15.38!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!0.94!10.92!HOXB7;;chr14:95236551..95236576,-!p2@GSC!0.94!7.69!GSC;;chr1:170632250..170632277,+!p7@PRRX1!0.94!7.69!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.94!7.69!FOXS1;;chr2:85981027..85981047,+!p8@ATOH8!0.94!7.69!ATOH8;;chr4:111558135..111558198,-!p2@PITX2!0.94!7.69!PITX2;;chr8:72756213..72756243,-!p5@MSC!0.92!9.68!MSC;;chr8:72756267..72756296,-!p4@MSC!0.90!10.42!MSC;;chr15:96876966..96877017,+!p12@NR2F2!0.90!10.17!NR2F2;;chr6:28321909..28321965,-!p3@ZNF323!0.90!6.95!ZNF323;;chr7:27192185..27192209,-!p1@HOXA3!0.90!6.95!HOXA3;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.70!HAND2;;chr15:96874244..96874259,+!p5@NR2F2!0.88!16.62!NR2F2;;chr3:157823517..157823562,-!p1@SHOX2!0.88!7.20!SHOX2;;chr13:37494275..37494304,-!p2@SMAD9!0.87!6.45!SMAD9;;chr8:49833978..49833996,-!p1@SNAI2!0.86!136.96!SNAI2;;chr10:77161504..77161530,-!p1@ZNF503!0.86!89.07!ZNF503;;chr18:19749541..19749557,+!p1@GATA6!0.86!20.59!GATA6;;chrX:106960221..106960236,-!p3@TSC22D3!0.85!17.62!TSC22D3;;chr7:150946015..150946070,-!p3@SMARCD3!0.85!13.65!SMARCD3;;chr14:62203595..62203676,+!p4@HIF1A!0.85!11.91!HIF1A;;chr12:80085061..80085119,-!p6@PAWR!0.85!9.92!PAWR;;chr3:170076314..170076334,+!p2@SKIL!0.85!8.19!SKIL;;chr8:72756063..72756125,-!p1@MSC!0.84!12.65!MSC;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.95!EBF3;;chr10:119303078..119303169,+!p2@EMX2!0.83!5.71!EMX2;;chr12:54447686..54447704,+!p5@HOXC4!0.83!5.71!HOXC4;;chr10:63809077..63809089,+!p5@ARID5B!0.82!12.65!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.81!79.89!ARID5B;;chr17:38498594..38498661,+!p2@RARA!0.81!19.60!RARA;;chr12:48298765..48298783,-!p2@VDR!0.81!11.91!VDR;;chr2:85980951..85981004,+!p1@ATOH8!0.81!9.18!ATOH8;;chr14:95236440..95236465,-!p1@GSC!0.81!5.46!GSC;;chr7:27205106..27205134,-!p2@HOXA9!0.81!5.46!HOXA9;;chr13:45151259..45151326,-!p2@TSC22D1!0.79!33.49!TSC22D1;;chr6:28321971..28321995,-!p1@ZNF323!0.79!5.21!ZNF323;;chr1:75600067..75600094,+!p2@LHX8!0.79!5.21!LHX8;;chr12:57914286..57914304,-!p1@DDIT3!0.78!201.22!DDIT3;;chr14:75894714..75894733,+!p1@JDP2!0.78!154.57!JDP2;;chr15:96869255..96869291,+!p6@NR2F2!0.78!9.68!NR2F2;;chr5:158526459..158526481,-!p2@EBF1!0.78!6.95!EBF1;;chr5:2751762..2751784,-!p1@IRX2!0.78!4.96!IRX2;;chr7:1577899..1577943,+!p3@MAFK!0.78!4.96!MAFK;;chr10:114889016..114889037,+!p15@TCF7L2!0.78!4.96!TCF7L2;;chr17:46682321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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002580;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000310
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg38.nobarcode.ctss.bed.gz
|id=FF:11467-119B9
|id=FF:11467-119B9
|is_a=EFO:0002091;;FF:0000139
|is_a=EFO:0002091;;FF:0000139
|is_obsolete=
|is_obsolete=
|library_id=CNhs11052
|library_id_phase_based=2:CNhs11052
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11467
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11467
|name=Preadipocyte - breast, donor1
|name=Preadipocyte - breast, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11052,LSID722,release008,COMPLETED
|profile_hcage=CNhs11052,LSID722,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
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|sample_cell_line=
Line 83: Line 101:
|top_motifs=TAL1_TCF{3,4,12}:2.30011083278;ESR1:2.13064480596;FOXL1:2.04688233633;MAFB:1.83541772759;HES1:1.83364961619;HIF1A:1.75590804371;NKX3-1:1.74034517097;EVI1:1.7188530671;XBP1:1.67620552687;GLI1..3:1.62110225193;NKX2-2,8:1.61822564336;UFEwm:1.4717402079;TEAD1:1.46581773686;GZF1:1.44157635792;IKZF1:1.42533079718;TEF:1.41070068418;ATF6:1.38076560952;MYBL2:1.35350515094;NFE2L1:1.34433741389;TP53:1.30409848634;ZNF238:1.23337026981;SPZ1:1.21700912473;HMX1:1.20462048763;TFAP4:1.20392499737;EBF1:1.19452279883;HOX{A4,D4}:1.19210945373;PAX1,9:1.1644392773;FOXA2:1.13703088849;EN1,2:1.11514012812;HOX{A6,A7,B6,B7}:1.09786137983;HOX{A5,B5}:1.05553309236;NFIX:1.0516822186;ALX4:1.0404466824;NANOG{mouse}:1.00786157961;SMAD1..7,9:1.00178608862;ZNF423:0.984223079687;RXRA_VDR{dimer}:0.943366576075;HBP1_HMGB_SSRP1_UBTF:0.933810835039;GCM1,2:0.925525861248;ADNP_IRX_SIX_ZHX:0.922386780606;HMGA1,2:0.891660231001;NR3C1:0.839358963399;HLF:0.827086880273;NKX3-2:0.819671031155;TLX1..3_NFIC{dimer}:0.81532720657;RXR{A,B,G}:0.810031326605;KLF4:0.79333487489;NHLH1,2:0.792342644448;NFATC1..3:0.764625236757;LHX3,4:0.759726964276;MTE{core}:0.756116140944;SRF:0.73098349857;NR6A1:0.705629330751;HAND1,2:0.651229214727;TBX4,5:0.630095927721;TFAP2B:0.624608182529;HSF1,2:0.619258845456;FOXO1,3,4:0.6049451768;PAX5:0.599002475608;MAZ:0.58713224577;HIC1:0.584556915003;GFI1B:0.570844628647;GTF2I:0.545420036737;bHLH_family:0.518831262138;NKX2-1,4:0.4936770375;ZNF148:0.490868271136;SOX17:0.479931487145;FOX{I1,J2}:0.467660490936;TFAP2{A,C}:0.451562033572;MEF2{A,B,C,D}:0.44479204827;TFCP2:0.437673167534;GTF2A1,2:0.384033313546;NFE2L2:0.368739566663;AR:0.354098189822;SOX5:0.336710428395;MYFfamily:0.316633070006;STAT2,4,6:0.299200815046;DBP:0.276661134264;ARID5B:0.249901415387;ZNF384:0.234001096985;TBP:0.225824881476;GATA4:0.16560573351;MZF1:0.164943689521;CEBPA,B_DDIT3:0.160869421382;MTF1:0.156998974215;POU6F1:0.152472588316;PATZ1:0.0975206427427;CDC5L:0.0894561610996;ZIC1..3:0.0685403240323;SREBF1,2:0.0680189777099;TLX2:0.0489085083643;FOX{D1,D2}:0.0348831418846;REST:0.0345114674332;TGIF1:0.00107967198847;AHR_ARNT_ARNT2:-0.000547257064979;PAX8:-0.00774659574681;BACH2:-0.015012547808;PRDM1:-0.0385580879406;T:-0.0444005458151;ELK1,4_GABP{A,B1}:-0.0571965272814;MYB:-0.0613790106189;HNF1A:-0.0671770835804;PAX2:-0.0764021874152;RREB1:-0.0985130513319;ZBTB6:-0.115627995227;FOSL2:-0.118772388983;PAX4:-0.135570573942;EP300:-0.145427230912;AIRE:-0.157565574876;MED-1{core}:-0.168765769352;XCPE1{core}:-0.169320207893;IRF1,2:-0.187470103515;OCT4_SOX2{dimer}:-0.18869837554;STAT5{A,B}:-0.189414295678;STAT1,3:-0.219695166665;FOS_FOS{B,L1}_JUN{B,D}:-0.236681484022;LEF1_TCF7_TCF7L1,2:-0.237587383556;SOX2:-0.257367115565;ZNF143:-0.260026354705;YY1:-0.307948933911;DMAP1_NCOR{1,2}_SMARC:-0.308691183197;NRF1:-0.316363899644;FOXP3:-0.32196893261;NFIL3:-0.323118861806;HNF4A_NR2F1,2:-0.32713811571;PAX6:-0.332414970387;EGR1..3:-0.332503910592;RFX1:-0.338013780198;BPTF:-0.341382585793;RUNX1..3:-0.3612383755;ETS1,2:-0.367929678411;ZBTB16:-0.372960848282;JUN:-0.39548932587;NFE2:-0.399066004229;FOXN1:-0.428552848981;HOXA9_MEIS1:-0.453782184413;CRX:-0.48370278481;ATF2:-0.49770536931;CREB1:-0.498624134122;ATF5_CREB3:-0.500486398088;SPI1:-0.50262300104;VSX1,2:-0.503425262861;FOXM1:-0.517372025891;IKZF2:-0.52401504462;NKX2-3_NKX2-5:-0.53160481101;NR5A1,2:-0.54515854766;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.558839055526;FOXD3:-0.562409167311;NKX6-1,2:-0.574523271615;ESRRA:-0.576178428577;ELF1,2,4:-0.587036083886;TOPORS:-0.595075809783;POU3F1..4:-0.595598450695;ZFP161:-0.595793999432;GFI1:-0.597770192806;GATA6:-0.600885467333;NFKB1_REL_RELA:-0.609209537973;FOXQ1:-0.627369339093;CUX2:-0.635031141073;ZEB1:-0.640870802606;PPARG:-0.669669623123;ATF4:-0.69038591637;SPIB:-0.696702759628;PRRX1,2:-0.715632070173;TFDP1:-0.718593075545;NANOG:-0.729428024017;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.730782596868;ONECUT1,2:-0.731190331761;SNAI1..3:-0.760691127783;NR1H4:-0.771199602098;FOX{F1,F2,J1}:-0.787657848441;POU5F1:-0.798940680155;PITX1..3:-0.809321549208;SP1:-0.819104994383;FOXP1:-0.844445629335;IRF7:-0.878392795424;RFX2..5_RFXANK_RFXAP:-0.899107963924;BREu{core}:-0.953509914614;SOX{8,9,10}:-0.99225073022;POU1F1:-0.994725278098;ALX1:-1.10508275849;LMO2:-1.10768367173;MYOD1:-1.13016284653;CDX1,2,4:-1.15691214693;RORA:-1.16758976972;E2F1..5:-1.19749310518;PAX3,7:-1.20897934447;RBPJ:-1.21225001129;PDX1:-1.24707589044;NFY{A,B,C}:-1.35958085044;PBX1:-1.7848191378;POU2F1..3:-2.11863237858
|top_motifs=TAL1_TCF{3,4,12}:2.30011083278;ESR1:2.13064480596;FOXL1:2.04688233633;MAFB:1.83541772759;HES1:1.83364961619;HIF1A:1.75590804371;NKX3-1:1.74034517097;EVI1:1.7188530671;XBP1:1.67620552687;GLI1..3:1.62110225193;NKX2-2,8:1.61822564336;UFEwm:1.4717402079;TEAD1:1.46581773686;GZF1:1.44157635792;IKZF1:1.42533079718;TEF:1.41070068418;ATF6:1.38076560952;MYBL2:1.35350515094;NFE2L1:1.34433741389;TP53:1.30409848634;ZNF238:1.23337026981;SPZ1:1.21700912473;HMX1:1.20462048763;TFAP4:1.20392499737;EBF1:1.19452279883;HOX{A4,D4}:1.19210945373;PAX1,9:1.1644392773;FOXA2:1.13703088849;EN1,2:1.11514012812;HOX{A6,A7,B6,B7}:1.09786137983;HOX{A5,B5}:1.05553309236;NFIX:1.0516822186;ALX4:1.0404466824;NANOG{mouse}:1.00786157961;SMAD1..7,9:1.00178608862;ZNF423:0.984223079687;RXRA_VDR{dimer}:0.943366576075;HBP1_HMGB_SSRP1_UBTF:0.933810835039;GCM1,2:0.925525861248;ADNP_IRX_SIX_ZHX:0.922386780606;HMGA1,2:0.891660231001;NR3C1:0.839358963399;HLF:0.827086880273;NKX3-2:0.819671031155;TLX1..3_NFIC{dimer}:0.81532720657;RXR{A,B,G}:0.810031326605;KLF4:0.79333487489;NHLH1,2:0.792342644448;NFATC1..3:0.764625236757;LHX3,4:0.759726964276;MTE{core}:0.756116140944;SRF:0.73098349857;NR6A1:0.705629330751;HAND1,2:0.651229214727;TBX4,5:0.630095927721;TFAP2B:0.624608182529;HSF1,2:0.619258845456;FOXO1,3,4:0.6049451768;PAX5:0.599002475608;MAZ:0.58713224577;HIC1:0.584556915003;GFI1B:0.570844628647;GTF2I:0.545420036737;bHLH_family:0.518831262138;NKX2-1,4:0.4936770375;ZNF148:0.490868271136;SOX17:0.479931487145;FOX{I1,J2}:0.467660490936;TFAP2{A,C}:0.451562033572;MEF2{A,B,C,D}:0.44479204827;TFCP2:0.437673167534;GTF2A1,2:0.384033313546;NFE2L2:0.368739566663;AR:0.354098189822;SOX5:0.336710428395;MYFfamily:0.316633070006;STAT2,4,6:0.299200815046;DBP:0.276661134264;ARID5B:0.249901415387;ZNF384:0.234001096985;TBP:0.225824881476;GATA4:0.16560573351;MZF1:0.164943689521;CEBPA,B_DDIT3:0.160869421382;MTF1:0.156998974215;POU6F1:0.152472588316;PATZ1:0.0975206427427;CDC5L:0.0894561610996;ZIC1..3:0.0685403240323;SREBF1,2:0.0680189777099;TLX2:0.0489085083643;FOX{D1,D2}:0.0348831418846;REST:0.0345114674332;TGIF1:0.00107967198847;AHR_ARNT_ARNT2:-0.000547257064979;PAX8:-0.00774659574681;BACH2:-0.015012547808;PRDM1:-0.0385580879406;T:-0.0444005458151;ELK1,4_GABP{A,B1}:-0.0571965272814;MYB:-0.0613790106189;HNF1A:-0.0671770835804;PAX2:-0.0764021874152;RREB1:-0.0985130513319;ZBTB6:-0.115627995227;FOSL2:-0.118772388983;PAX4:-0.135570573942;EP300:-0.145427230912;AIRE:-0.157565574876;MED-1{core}:-0.168765769352;XCPE1{core}:-0.169320207893;IRF1,2:-0.187470103515;OCT4_SOX2{dimer}:-0.18869837554;STAT5{A,B}:-0.189414295678;STAT1,3:-0.219695166665;FOS_FOS{B,L1}_JUN{B,D}:-0.236681484022;LEF1_TCF7_TCF7L1,2:-0.237587383556;SOX2:-0.257367115565;ZNF143:-0.260026354705;YY1:-0.307948933911;DMAP1_NCOR{1,2}_SMARC:-0.308691183197;NRF1:-0.316363899644;FOXP3:-0.32196893261;NFIL3:-0.323118861806;HNF4A_NR2F1,2:-0.32713811571;PAX6:-0.332414970387;EGR1..3:-0.332503910592;RFX1:-0.338013780198;BPTF:-0.341382585793;RUNX1..3:-0.3612383755;ETS1,2:-0.367929678411;ZBTB16:-0.372960848282;JUN:-0.39548932587;NFE2:-0.399066004229;FOXN1:-0.428552848981;HOXA9_MEIS1:-0.453782184413;CRX:-0.48370278481;ATF2:-0.49770536931;CREB1:-0.498624134122;ATF5_CREB3:-0.500486398088;SPI1:-0.50262300104;VSX1,2:-0.503425262861;FOXM1:-0.517372025891;IKZF2:-0.52401504462;NKX2-3_NKX2-5:-0.53160481101;NR5A1,2:-0.54515854766;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.558839055526;FOXD3:-0.562409167311;NKX6-1,2:-0.574523271615;ESRRA:-0.576178428577;ELF1,2,4:-0.587036083886;TOPORS:-0.595075809783;POU3F1..4:-0.595598450695;ZFP161:-0.595793999432;GFI1:-0.597770192806;GATA6:-0.600885467333;NFKB1_REL_RELA:-0.609209537973;FOXQ1:-0.627369339093;CUX2:-0.635031141073;ZEB1:-0.640870802606;PPARG:-0.669669623123;ATF4:-0.69038591637;SPIB:-0.696702759628;PRRX1,2:-0.715632070173;TFDP1:-0.718593075545;NANOG:-0.729428024017;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.730782596868;ONECUT1,2:-0.731190331761;SNAI1..3:-0.760691127783;NR1H4:-0.771199602098;FOX{F1,F2,J1}:-0.787657848441;POU5F1:-0.798940680155;PITX1..3:-0.809321549208;SP1:-0.819104994383;FOXP1:-0.844445629335;IRF7:-0.878392795424;RFX2..5_RFXANK_RFXAP:-0.899107963924;BREu{core}:-0.953509914614;SOX{8,9,10}:-0.99225073022;POU1F1:-0.994725278098;ALX1:-1.10508275849;LMO2:-1.10768367173;MYOD1:-1.13016284653;CDX1,2,4:-1.15691214693;RORA:-1.16758976972;E2F1..5:-1.19749310518;PAX3,7:-1.20897934447;RBPJ:-1.21225001129;PDX1:-1.24707589044;NFY{A,B,C}:-1.35958085044;PBX1:-1.7848191378;POU2F1..3:-2.11863237858
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11467-119B9;search_select_hide=table117:FF:11467-119B9
}}
}}

Latest revision as of 18:03, 4 June 2020

Name:Preadipocyte - breast, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11052
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stage52 years old adult
sexfemale
age52
cell typepreadipocyte
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004831
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11052 CAGE DRX008407 DRR009279
Accession ID Hg19

Library idBAMCTSS
CNhs11052 DRZ000704 DRZ002089
Accession ID Hg38

Library idBAMCTSS
CNhs11052 DRZ012054 DRZ013439
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.405
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.927
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0993
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0742
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.271
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.24
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.279
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.242
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.242
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.738
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.981
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0963
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.651
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.612
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.175
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.175
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.299
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.492
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.914
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.51
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.914
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.008
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11052

Jaspar motifP-value
MA0002.20.996
MA0003.10.298
MA0004.10.195
MA0006.10.13
MA0007.10.778
MA0009.10.19
MA0014.10.216
MA0017.10.569
MA0018.21.543e-5
MA0019.10.527
MA0024.12.97593e-9
MA0025.10.00629
MA0027.10.379
MA0028.10.0912
MA0029.10.0712
MA0030.10.495
MA0031.10.698
MA0035.20.15
MA0038.10.00281
MA0039.20.00844
MA0040.10.344
MA0041.10.661
MA0042.10.955
MA0043.14.48644e-4
MA0046.10.341
MA0047.20.859
MA0048.10.563
MA0050.14.82457e-5
MA0051.10.0567
MA0052.10.643
MA0055.10.406
MA0057.10.473
MA0058.10.124
MA0059.10.927
MA0060.13.78831e-14
MA0061.10.0131
MA0062.25.97635e-6
MA0065.20.624
MA0066.10.555
MA0067.10.018
MA0068.10.877
MA0069.10.0144
MA0070.10.828
MA0071.10.88
MA0072.10.614
MA0073.10.807
MA0074.10.95
MA0076.10.0124
MA0077.10.782
MA0078.10.717
MA0079.20.874
MA0080.25.85271e-6
MA0081.10.0129
MA0083.10.314
MA0084.10.141
MA0087.10.406
MA0088.10.706
MA0090.12.59361e-8
MA0091.10.0141
MA0092.10.0284
MA0093.10.181
MA0099.20.0345
MA0100.10.677
MA0101.16.33085e-5
MA0102.20.238
MA0103.15.53641e-4
MA0104.20.0114
MA0105.10.138
MA0106.10.0272
MA0107.11.87241e-4
MA0108.20.532
MA0111.10.63
MA0112.20.00292
MA0113.10.115
MA0114.10.961
MA0115.10.0165
MA0116.10.284
MA0117.10.369
MA0119.10.273
MA0122.10.635
MA0124.10.229
MA0125.10.326
MA0131.10.19
MA0135.10.145
MA0136.12.35121e-7
MA0137.20.415
MA0138.20.344
MA0139.10.705
MA0140.10.896
MA0141.10.867
MA0142.10.259
MA0143.10.275
MA0144.10.844
MA0145.10.129
MA0146.10.86
MA0147.10.0558
MA0148.10.702
MA0149.10.877
MA0150.10.0989
MA0152.16.09427e-4
MA0153.10.937
MA0154.10.602
MA0155.10.289
MA0156.16.17782e-6
MA0157.10.889
MA0159.10.141
MA0160.10.146
MA0162.10.0717
MA0163.10.0431
MA0164.10.274
MA0258.10.37
MA0259.10.294



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11052

Novel motifP-value
10.819
100.512
1000.516
1010.536
1020.0718
1030.597
1040.579
1050.168
1060.149
1070.277
1080.259
1090.586
110.892
1100.967
1110.814
1120.28
1130.107
1140.0394
1150.151
1160.198
1170.603
1180.174
1190.952
120.474
1200.95
1210.651
1220.394
1230.0118
1240.741
1250.854
1260.486
1270.434
1280.559
1290.941
130.622
1300.915
1310.299
1320.467
1330.324
1340.349
1350.526
1360.739
1370.727
1380.395
1390.117
140.202
1400.853
1410.899
1420.645
1430.447
1440.673
1450.642
1460.93
1470.266
1480.841
1495.42627e-5
150.683
1500.53
1510.519
1520.017
1530.0322
1540.944
1550.00213
1560.487
1570.568
1580.0217
1590.414
160.0228
1600.742
1610.501
1620.686
1630.288
1640.564
1650.911
1660.213
1670.579
1680.393
1690.0351
170.5
180.0683
190.0162
20.382
200.321
210.472
220.21
230.0904
240.109
250.474
260.777
270.521
280.233
290.969
30.514
300.528
310.632
323.11035e-14
330.967
340.778
350.771
360.0477
370.111
380.474
390.161
40.874
400.278
410.78
420.629
430.202
440.818
450.774
460.558
470.921
480.943
490.68
50.348
500.905
510.488
520.576
530.106
540.763
550.0361
560.898
570.959
580.308
590.299
60.535
600.678
610.308
620.862
630.587
640.716
650.518
660.329
670.557
680.769
690.582
70.366
700.322
710.183
720.706
730.0125
740.0568
750.679
760.467
770.113
780.349
790.0182
80.459
800.689
810.322
820.143
830.936
840.129
850.0839
860.481
870.213
880.909
890.0941
90.596
900.805
910.814
920.0253
930.713
940.646
950.371
960.238
970.295
980.387
990.0283



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11052


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002580 (preadipocyte of the breast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000139 (human preadipocyte of the breast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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