FF:11544-120B5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005397 | ||
|accession_numbers=CAGE;DRX008170;DRR009042;DRZ000467;DRZ001852 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013683 | ||
|accession_numbers=CAGE;DRX008170;DRR009042;DRZ000467;DRZ001852;DRZ011817;DRZ013202 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX012360;DRR013808;DRZ003009 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.77!594.26!IRF8;;chr2:100759010..100759035,-!p1@AFF3!2.44!275.50!AFF3;;chr11:111249993..111250006,-!p1@POU2AF1!2.41!255.58!POU2AF1;;chrX:106960180..106960197,-!p2@TSC22D3!2.34!783.81!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!2.33!566.37!TSC22D3;;chr6:91006518..91006570,-!p1@BACH2!2.32!463.34!BACH2;;chrX:106960249..106960260,-!p5@TSC22D3!2.29!299.98!TSC22D3;;chr19:50922187..50922204,+!p1@SPIB!2.21!162.23!SPIB;;chr2:100759037..100759058,-!p2@AFF3!2.18!150.27!AFF3;;chr6:91006575..91006602,-!p2@BACH2!2.17!211.75!BACH2;;chr6:391743..391759,+!p1@IRF4!2.09!121.81!IRF4;;chr9:37034186..37034216,-!p2@PAX5!2.05!111.57!PAX5;;chr17:38020392..38020477,-!p1@IKZF3!2.02!104.74!IKZF3;;chr3:71355163..71355209,-!p5@FOXP1!1.98!129.21!FOXP1;;chr19:45971246..45971265,+!p1@FOSB!1.91!1413.36!FOSB;;chr2:231090433..231090469,+!p1@SP140!1.91!80.26!SP140;;chr11:47400078..47400106,-!p1@SPI1!1.91!79.69!SPI1;;chr2:157189180..157189290,-!p1@NR4A2!1.90!384.79!NR4A2;;chr19:54041669..54041697,+!p2@ZNF331!1.87!73.43!ZNF331;;chr2:231090471..231090504,+!p2@SP140!1.82!64.89!SP140;;chr7:50344289..50344323,+!p1@IKZF1!1.81!63.75!IKZF1;;chr2:60780607..60780624,-!p2@BCL11A!1.80!184.43!BCL11A;;chr19:36391434..36391450,-!p1@NFKBID!1.74!102.46!NFKBID;;chr7:50343634..50343717,+!p2@IKZF1!1.73!52.37!IKZF1;;chr5:88178983..88179012,-!p1@MEF2C!1.71!371.13!MEF2C;;chr19:54058073..54058088,+!p1@ZNF331!1.71!50.09!ZNF331;;chrX:106960285..106960299,-!p1@TSC22D3!1.70!1246.58!TSC22D3;;chr8:81397846..81397860,+!p3@ZBTB10!1.70!60.91!ZBTB10;;chr2:100758991..100759009,-!p3@AFF3!1.70!48.95!AFF3;;chr14:75745523..75745537,+!p1@FOS!1.69!5415.49!FOS;;chr14:64971288..64971316,-!p2@ZBTB25!1.69!141.16!ZBTB25;;chr20:50159198..50159299,-!p1@NFATC2!1.69!68.31!NFATC2;;chr14:69262947..69262986,-!p3@ZFP36L1!1.66!53.51!ZFP36L1;;chr9:37034258..37034270,-!p3@PAX5!1.66!44.97!PAX5;;chr7:50344251..50344288,+!p3@IKZF1!1.65!43.83!IKZF1;;chr2:60781201..60781258,-!p3@BCL11A!1.65!43.83!BCL11A;;chr20:56195474..56195506,-!p1@ZBP1!1.63!41.55!ZBP1;;chr8:81397820..81397836,+!p2@ZBTB10!1.62!50.09!ZBTB10;;chr5:158526756..158526797,-!p3@EBF1!1.61!39.28!EBF1;;chr19:16435625..16435682,+!p1@KLF2!1.59!1160.63!KLF2;;chr3:32023232..32023273,+!p1@ZNF860!1.57!50.66!ZNF860;;chr2:157189617..157189667,-!p4@NR4A2!1.57!36.43!NR4A2;;chr17:38020557..38020572,-!p4@IKZF3!1.57!36.43!IKZF3;;chr1:25256756..25256774,-!p1@RUNX3!1.56!64.89!RUNX3;;chr17:38497662..38497713,+!p4@RARA!1.55!39.84!RARA;;chr2:61108695..61108753,+!p1@REL!1.53!216.30!REL;;chr3:18486354..18486377,-!p2@SATB1!1.53!40.98!SATB1;;chr3:71409904..71409927,-!p46@FOXP1!1.52!31.88!FOXP1;;chr8:81397876..81397898,+!p5@ZBTB10!1.51!36.43!ZBTB10;;chr5:88120151..88120177,-!p6@MEF2C!1.51!31.31!MEF2C;;chr3:18487057..18487105,-!p4@SATB1!1.50!30.74!SATB1;;chr6:91006503..91006517,-!p3@BACH2!1.49!29.60!BACH2;;chr5:131826457..131826514,-!p1@IRF1!1.48!1091.18!IRF1;;chr8:123793988..123794016,+!p1@ZHX2!1.46!48.38!ZHX2;;chr5:142782823..142782854,-!p3@NR3C1!1.46!39.28!NR3C1;;chr3:71631151..71631194,-!p15@FOXP1!1.45!30.74!FOXP1;;chr1:59249707..59249727,-!p1@JUN!1.44!1068.41!JUN;;chr10:3827371..3827386,-!p2@KLF6!1.42!204.92!KLF6;;chr19:42636586..42636607,-!p1@POU2F2!1.42!68.31!POU2F2;;chr9:102584262..102584276,+!p1@NR4A3!1.42!55.21!NR4A3;;chr1:10754477..10754517,-!p1@CASZ1!1.40!39.84!CASZ1;;chr2:60778035..60778060,-!p4@BCL11A!1.40!28.46!BCL11A;;chr9:37034469..37034474,-!p1@PAX5!1.39!23.34!PAX5;;chr2:68592406..68592424,+!p1@PLEK!1.38!22.77!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.37!449.68!NFKB1;;chr13:41593425..41593480,-!p1@ELF1!1.37!137.75!ELF1;;chr9:3525727..3525828,-!p2@RFX3!1.37!56.92!RFX3;;chr2:208031542..208031595,-!p2@KLF7!1.36!151.41!KLF7;;chr14:69262916..69262929,-!p11@ZFP36L1!1.35!21.63!ZFP36L1;;chrX:101186981..101187030,-!p1@ZMAT1!1.34!66.03!ZMAT1;;chr19:12721790..12721810,+!p2@ZNF791!1.34!56.35!ZNF791;;chr17:38020516..38020544,-!p5@IKZF3!1.34!21.06!IKZF3;;chr8:86089531..86089544,+!p7@E2F5!1.33!20.49!E2F5;;chr10:94449703..94449718,+!p1@HHEX!1.32!75.71!HHEX;;chr8:42698292..42698321,-!p8@THAP1!1.32!19.92!THAP1;;chr6:157098579..157098634,+!p4@ARID1B!1.30!42.12!ARID1B;;chr9:102584128..102584144,+!p3@NR4A3!1.30!35.86!NR4A3;;chr2:60780753..60780800,-!p1@BCL11A!1.29!89.37!BCL11A;;chr7:64126535..64126559,+!p2@ZNF107!1.29!38.71!ZNF107;;chr18:53254566..53254567,-!p8@TCF4!1.28!29.60!TCF4;;chr6:144385698..144385742,-!p2@PLAGL1!1.28!21.63!PLAGL1;;chr17:56565257..56565283,-!p2@HSF5!1.28!18.21!HSF5;;chr19:54041645..54041661,+!p5@ZNF331!1.28!18.21!ZNF331;;chr14:35873947..35873965,-!p1@NFKBIA!1.27!1092.89!NFKBIA;;chr7:50348268..50348366,+!p4@IKZF1!1.27!17.65!IKZF1;;chr8:102218439..102218455,-!p3@ZNF706!1.26!17.08!ZNF706;;chr1:14075903..14075940,+!p1@PRDM2!1.25!349.50!PRDM2;;chr12:72056800..72056834,+!p1@THAP2!1.24!22.20!THAP2;;chr5:158526693..158526706,-!p8@EBF1!1.24!16.51!EBF1;;chr19:12075844..12075880,+!p3@ZNF763!1.23!27.32!ZNF763;;chr3:101546827..101546847,+!p2@NFKBIZ!1.23!22.20!NFKBIZ;;chr9:37034280..37034297,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| |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.77!594.26!IRF8;;chr2:100759010..100759035,-!p1@AFF3!2.44!275.50!AFF3;;chr11:111249993..111250006,-!p1@POU2AF1!2.41!255.58!POU2AF1;;chrX:106960180..106960197,-!p2@TSC22D3!2.34!783.81!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!2.33!566.37!TSC22D3;;chr6:91006518..91006570,-!p1@BACH2!2.32!463.34!BACH2;;chrX:106960249..106960260,-!p5@TSC22D3!2.29!299.98!TSC22D3;;chr19:50922187..50922204,+!p1@SPIB!2.21!162.23!SPIB;;chr2:100759037..100759058,-!p2@AFF3!2.18!150.27!AFF3;;chr6:91006575..91006602,-!p2@BACH2!2.17!211.75!BACH2;;chr6:391743..391759,+!p1@IRF4!2.09!121.81!IRF4;;chr9:37034186..37034216,-!p2@PAX5!2.05!111.57!PAX5;;chr17:38020392..38020477,-!p1@IKZF3!2.02!104.74!IKZF3;;chr3:71355163..71355209,-!p5@FOXP1!1.98!129.21!FOXP1;;chr19:45971246..45971265,+!p1@FOSB!1.91!1413.36!FOSB;;chr2:231090433..231090469,+!p1@SP140!1.91!80.26!SP140;;chr11:47400078..47400106,-!p1@SPI1!1.91!79.69!SPI1;;chr2:157189180..157189290,-!p1@NR4A2!1.90!384.79!NR4A2;;chr19:54041669..54041697,+!p2@ZNF331!1.87!73.43!ZNF331;;chr2:231090471..231090504,+!p2@SP140!1.82!64.89!SP140;;chr7:50344289..50344323,+!p1@IKZF1!1.81!63.75!IKZF1;;chr2:60780607..60780624,-!p2@BCL11A!1.80!184.43!BCL11A;;chr19:36391434..36391450,-!p1@NFKBID!1.74!102.46!NFKBID;;chr7:50343634..50343717,+!p2@IKZF1!1.73!52.37!IKZF1;;chr5:88178983..88179012,-!p1@MEF2C!1.71!371.13!MEF2C;;chr19:54058073..54058088,+!p1@ZNF331!1.71!50.09!ZNF331;;chrX:106960285..106960299,-!p1@TSC22D3!1.70!1246.58!TSC22D3;;chr8:81397846..81397860,+!p3@ZBTB10!1.70!60.91!ZBTB10;;chr2:100758991..100759009,-!p3@AFF3!1.70!48.95!AFF3;;chr14:75745523..75745537,+!p1@FOS!1.69!5415.49!FOS;;chr14:64971288..64971316,-!p2@ZBTB25!1.69!141.16!ZBTB25;;chr20:50159198..50159299,-!p1@NFATC2!1.69!68.31!NFATC2;;chr14:69262947..69262986,-!p3@ZFP36L1!1.66!53.51!ZFP36L1;;chr9:37034258..37034270,-!p3@PAX5!1.66!44.97!PAX5;;chr7:50344251..50344288,+!p3@IKZF1!1.65!43.83!IKZF1;;chr2:60781201..60781258,-!p3@BCL11A!1.65!43.83!BCL11A;;chr20:56195474..56195506,-!p1@ZBP1!1.63!41.55!ZBP1;;chr8:81397820..81397836,+!p2@ZBTB10!1.62!50.09!ZBTB10;;chr5:158526756..158526797,-!p3@EBF1!1.61!39.28!EBF1;;chr19:16435625..16435682,+!p1@KLF2!1.59!1160.63!KLF2;;chr3:32023232..32023273,+!p1@ZNF860!1.57!50.66!ZNF860;;chr2:157189617..157189667,-!p4@NR4A2!1.57!36.43!NR4A2;;chr17:38020557..38020572,-!p4@IKZF3!1.57!36.43!IKZF3;;chr1:25256756..25256774,-!p1@RUNX3!1.56!64.89!RUNX3;;chr17:38497662..38497713,+!p4@RARA!1.55!39.84!RARA;;chr2:61108695..61108753,+!p1@REL!1.53!216.30!REL;;chr3:18486354..18486377,-!p2@SATB1!1.53!40.98!SATB1;;chr3:71409904..71409927,-!p46@FOXP1!1.52!31.88!FOXP1;;chr8:81397876..81397898,+!p5@ZBTB10!1.51!36.43!ZBTB10;;chr5:88120151..88120177,-!p6@MEF2C!1.51!31.31!MEF2C;;chr3:18487057..18487105,-!p4@SATB1!1.50!30.74!SATB1;;chr6:91006503..91006517,-!p3@BACH2!1.49!29.60!BACH2;;chr5:131826457..131826514,-!p1@IRF1!1.48!1091.18!IRF1;;chr8:123793988..123794016,+!p1@ZHX2!1.46!48.38!ZHX2;;chr5:142782823..142782854,-!p3@NR3C1!1.46!39.28!NR3C1;;chr3:71631151..71631194,-!p15@FOXP1!1.45!30.74!FOXP1;;chr1:59249707..59249727,-!p1@JUN!1.44!1068.41!JUN;;chr10:3827371..3827386,-!p2@KLF6!1.42!204.92!KLF6;;chr19:42636586..42636607,-!p1@POU2F2!1.42!68.31!POU2F2;;chr9:102584262..102584276,+!p1@NR4A3!1.42!55.21!NR4A3;;chr1:10754477..10754517,-!p1@CASZ1!1.40!39.84!CASZ1;;chr2:60778035..60778060,-!p4@BCL11A!1.40!28.46!BCL11A;;chr9:37034469..37034474,-!p1@PAX5!1.39!23.34!PAX5;;chr2:68592406..68592424,+!p1@PLEK!1.38!22.77!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.37!449.68!NFKB1;;chr13:41593425..41593480,-!p1@ELF1!1.37!137.75!ELF1;;chr9:3525727..3525828,-!p2@RFX3!1.37!56.92!RFX3;;chr2:208031542..208031595,-!p2@KLF7!1.36!151.41!KLF7;;chr14:69262916..69262929,-!p11@ZFP36L1!1.35!21.63!ZFP36L1;;chrX:101186981..101187030,-!p1@ZMAT1!1.34!66.03!ZMAT1;;chr19:12721790..12721810,+!p2@ZNF791!1.34!56.35!ZNF791;;chr17:38020516..38020544,-!p5@IKZF3!1.34!21.06!IKZF3;;chr8:86089531..86089544,+!p7@E2F5!1.33!20.49!E2F5;;chr10:94449703..94449718,+!p1@HHEX!1.32!75.71!HHEX;;chr8:42698292..42698321,-!p8@THAP1!1.32!19.92!THAP1;;chr6:157098579..157098634,+!p4@ARID1B!1.30!42.12!ARID1B;;chr9:102584128..102584144,+!p3@NR4A3!1.30!35.86!NR4A3;;chr2:60780753..60780800,-!p1@BCL11A!1.29!89.37!BCL11A;;chr7:64126535..64126559,+!p2@ZNF107!1.29!38.71!ZNF107;;chr18:53254566..53254567,-!p8@TCF4!1.28!29.60!TCF4;;chr6:144385698..144385742,-!p2@PLAGL1!1.28!21.63!PLAGL1;;chr17:56565257..56565283,-!p2@HSF5!1.28!18.21!HSF5;;chr19:54041645..54041661,+!p5@ZNF331!1.28!18.21!ZNF331;;chr14:35873947..35873965,-!p1@NFKBIA!1.27!1092.89!NFKBIA;;chr7:50348268..50348366,+!p4@IKZF1!1.27!17.65!IKZF1;;chr8:102218439..102218455,-!p3@ZNF706!1.26!17.08!ZNF706;;chr1:14075903..14075940,+!p1@PRDM2!1.25!349.50!PRDM2;;chr12:72056800..72056834,+!p1@THAP2!1.24!22.20!THAP2;;chr5:158526693..158526706,-!p8@EBF1!1.24!16.51!EBF1;;chr19:12075844..12075880,+!p3@ZNF763!1.23!27.32!ZNF763;;chr3:101546827..101546847,+!p2@NFKBIZ!1.23!22.20!NFKBIZ;;chr9:37034280..37034297,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000051 | |ffid_belonging_in_development=CL:0000134,CL:0000051 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor1.CNhs12343.11544-120B5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor1.CNhs12343.11544-120B5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor1.CNhs12343.11544-120B5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor1.CNhs12343.11544-120B5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor1.CNhs12343.11544-120B5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11544-120B5 | |id=FF:11544-120B5 | ||
|is_a=EFO:0002091;;FF:0000025;;FF:0000210 | |is_a=EFO:0002091;;FF:0000025;;FF:0000210 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12343!SRhi10066.TAGCTT | |library_id=CNhs12343!SRhi10066.TAGCTT | ||
|library_id_phase_based=2:CNhs12343 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11544 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.TAGCTT.11544 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11544 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.TAGCTT.11544 | |||
|name=CD19+ B Cells, donor1 | |name=CD19+ B Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 49: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12343,LSID913,release011,COMPLETED | |profile_hcage=CNhs12343,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 65: | Line 82: | ||
|rna_tube_id=120B5 | |rna_tube_id=120B5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10066.TAGCTT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 88: | Line 106: | ||
|top_motifs=ATF4:3.44920805049;CREB1:2.67216557188;POU2F1..3:2.66647883488;FOX{D1,D2}:2.5353410156;RFX2..5_RFXANK_RFXAP:2.53373921948;AIRE:2.49741549328;NFKB1_REL_RELA:2.48337466322;FOX{I1,J2}:2.43205248445;FOXN1:2.32054564226;ATF5_CREB3:2.27287129408;DMAP1_NCOR{1,2}_SMARC:2.170499993;FOXP1:2.16279159748;ZBTB16:2.06314605984;BPTF:1.96477955064;POU5F1:1.93711075456;HIF1A:1.86968213514;FOXO1,3,4:1.86902894451;PAX3,7:1.85029514787;FOX{F1,F2,J1}:1.81766572817;PAX2:1.77893383455;FOXA2:1.6889767258;SPI1:1.62426440017;NKX6-1,2:1.4879339864;PBX1:1.47515875065;ELF1,2,4:1.46950296924;HMX1:1.46580764745;RFX1:1.32521271415;PITX1..3:1.31192953062;IRF1,2:1.25710460704;ATF2:1.25562671797;SPIB:1.21263334127;HBP1_HMGB_SSRP1_UBTF:1.2023055061;PAX6:1.19778321817;ETS1,2:1.19233035485;RUNX1..3:1.17985655586;CDX1,2,4:1.16951145689;TLX2:1.10824778464;TOPORS:1.01396986538;FOXL1:0.995725843826;TGIF1:0.92434592897;BREu{core}:0.923505999083;JUN:0.917657126722;NANOG{mouse}:0.891862308428;STAT5{A,B}:0.761354720691;IKZF2:0.732131160487;ALX1:0.653213413031;EGR1..3:0.611388551789;NKX2-1,4:0.601630723456;EVI1:0.591059989772;PAX4:0.568835914293;MEF2{A,B,C,D}:0.566346166964;NFIL3:0.565403850936;SREBF1,2:0.530312760849;LMO2:0.524730823292;ZEB1:0.520107110286;ATF6:0.50278243324;FOXQ1:0.47755219321;FOXP3:0.458202478862;ESR1:0.412908662544;OCT4_SOX2{dimer}:0.384748058873;MYB:0.381085356862;CRX:0.322769559014;MYOD1:0.301241166141;IRF7:0.245967688522;SNAI1..3:0.245651518105;AHR_ARNT_ARNT2:0.234433754608;POU1F1:0.180714229688;SOX5:0.173691657862;bHLH_family:0.162608942032;LEF1_TCF7_TCF7L1,2:0.139840888866;MAFB:0.126653711239;NANOG:0.114089157881;TEF:0.0895451124203;HMGA1,2:0.086274655357;RXRA_VDR{dimer}:0.0822763252335;GATA6:0.0542272702299;ELK1,4_GABP{A,B1}:0.0474352808978;RXR{A,B,G}:0.0443756121818;DBP:0.0283461601582;NKX3-1:0.0193792310064;GLI1..3:-0.00660350499444;ZFP161:-0.00694950904568;HOX{A6,A7,B6,B7}:-0.0200563646482;SOX{8,9,10}:-0.020954227231;SMAD1..7,9:-0.0229183318381;PDX1:-0.0901377354881;ZNF384:-0.0903585726486;NKX2-2,8:-0.117582513056;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.122045213498;NHLH1,2:-0.132208082719;HOXA9_MEIS1:-0.175810576808;CUX2:-0.179947400854;EBF1:-0.205006126533;TBX4,5:-0.215025892048;PPARG:-0.219857199833;FOSL2:-0.236808441687;NR5A1,2:-0.238706039107;POU6F1:-0.242383023021;EP300:-0.270550596569;NR6A1:-0.299356403554;HNF4A_NR2F1,2:-0.307861627856;CDC5L:-0.319215235903;FOS_FOS{B,L1}_JUN{B,D}:-0.330289250605;E2F1..5:-0.340184497363;SRF:-0.344268108012;HES1:-0.346381199073;NFATC1..3:-0.350554775437;NRF1:-0.363764989218;CEBPA,B_DDIT3:-0.389612435976;RREB1:-0.393927841968;ALX4:-0.405938891931;MED-1{core}:-0.432908879421;PRRX1,2:-0.43339584461;ONECUT1,2:-0.479331825852;BACH2:-0.482316106312;MYFfamily:-0.488358558772;SOX2:-0.50770381351;NFIX:-0.549839114613;FOXD3:-0.59968180633;NFY{A,B,C}:-0.64239692341;PATZ1:-0.650601120307;HNF1A:-0.672081104382;RORA:-0.674624150051;MTE{core}:-0.684350113133;PRDM1:-0.713575974659;ARID5B:-0.737836917261;TFAP2{A,C}:-0.742820536352;NFE2L1:-0.744324851637;ZNF143:-0.745000766885;TAL1_TCF{3,4,12}:-0.783294339887;TFAP4:-0.793230258734;HOX{A4,D4}:-0.80396745364;SPZ1:-0.820392387065;NFE2:-0.825281252153;HAND1,2:-0.848919479329;RBPJ:-0.898611619594;YY1:-0.916976779227;HOX{A5,B5}:-0.917138150185;TFAP2B:-0.926858367676;STAT1,3:-0.927802668723;HLF:-0.933271714151;TFDP1:-0.936794900332;MZF1:-0.969897817184;T:-0.970684069497;NKX2-3_NKX2-5:-0.989481065386;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.990079360742;UFEwm:-1.01904018916;GATA4:-1.02435077287;REST:-1.03318501637;SOX17:-1.06311964266;MTF1:-1.06466864034;VSX1,2:-1.08620396589;XCPE1{core}:-1.1152248397;TBP:-1.13054509026;SP1:-1.13636995204;XBP1:-1.15259599137;HIC1:-1.16535408041;STAT2,4,6:-1.16674445196;TFCP2:-1.17669696573;MAZ:-1.1887840703;AR:-1.21248413064;POU3F1..4:-1.21712637406;MYBL2:-1.23478774568;TP53:-1.31122689699;PAX8:-1.32397451295;NFE2L2:-1.36354858337;HSF1,2:-1.3718362023;GFI1B:-1.40371898738;GFI1:-1.41615293106;LHX3,4:-1.41850758001;ADNP_IRX_SIX_ZHX:-1.43051835353;ZNF148:-1.45276740561;EN1,2:-1.4718666707;ZNF238:-1.50197433992;PAX5:-1.58409886669;NKX3-2:-1.62587918465;ZIC1..3:-1.65436068424;FOXM1:-1.67528292687;ZNF423:-1.67749012145;GZF1:-1.70926326279;TEAD1:-1.81397980531;ESRRA:-1.83386412073;NR1H4:-1.84479425666;GTF2A1,2:-1.87587696179;ZBTB6:-1.91792640585;GTF2I:-1.93413822457;GCM1,2:-2.15284140371;IKZF1:-2.15932113955;KLF4:-2.25168236696;TLX1..3_NFIC{dimer}:-2.49364280052;PAX1,9:-2.72760244819;NR3C1:-2.93827911982 | |top_motifs=ATF4:3.44920805049;CREB1:2.67216557188;POU2F1..3:2.66647883488;FOX{D1,D2}:2.5353410156;RFX2..5_RFXANK_RFXAP:2.53373921948;AIRE:2.49741549328;NFKB1_REL_RELA:2.48337466322;FOX{I1,J2}:2.43205248445;FOXN1:2.32054564226;ATF5_CREB3:2.27287129408;DMAP1_NCOR{1,2}_SMARC:2.170499993;FOXP1:2.16279159748;ZBTB16:2.06314605984;BPTF:1.96477955064;POU5F1:1.93711075456;HIF1A:1.86968213514;FOXO1,3,4:1.86902894451;PAX3,7:1.85029514787;FOX{F1,F2,J1}:1.81766572817;PAX2:1.77893383455;FOXA2:1.6889767258;SPI1:1.62426440017;NKX6-1,2:1.4879339864;PBX1:1.47515875065;ELF1,2,4:1.46950296924;HMX1:1.46580764745;RFX1:1.32521271415;PITX1..3:1.31192953062;IRF1,2:1.25710460704;ATF2:1.25562671797;SPIB:1.21263334127;HBP1_HMGB_SSRP1_UBTF:1.2023055061;PAX6:1.19778321817;ETS1,2:1.19233035485;RUNX1..3:1.17985655586;CDX1,2,4:1.16951145689;TLX2:1.10824778464;TOPORS:1.01396986538;FOXL1:0.995725843826;TGIF1:0.92434592897;BREu{core}:0.923505999083;JUN:0.917657126722;NANOG{mouse}:0.891862308428;STAT5{A,B}:0.761354720691;IKZF2:0.732131160487;ALX1:0.653213413031;EGR1..3:0.611388551789;NKX2-1,4:0.601630723456;EVI1:0.591059989772;PAX4:0.568835914293;MEF2{A,B,C,D}:0.566346166964;NFIL3:0.565403850936;SREBF1,2:0.530312760849;LMO2:0.524730823292;ZEB1:0.520107110286;ATF6:0.50278243324;FOXQ1:0.47755219321;FOXP3:0.458202478862;ESR1:0.412908662544;OCT4_SOX2{dimer}:0.384748058873;MYB:0.381085356862;CRX:0.322769559014;MYOD1:0.301241166141;IRF7:0.245967688522;SNAI1..3:0.245651518105;AHR_ARNT_ARNT2:0.234433754608;POU1F1:0.180714229688;SOX5:0.173691657862;bHLH_family:0.162608942032;LEF1_TCF7_TCF7L1,2:0.139840888866;MAFB:0.126653711239;NANOG:0.114089157881;TEF:0.0895451124203;HMGA1,2:0.086274655357;RXRA_VDR{dimer}:0.0822763252335;GATA6:0.0542272702299;ELK1,4_GABP{A,B1}:0.0474352808978;RXR{A,B,G}:0.0443756121818;DBP:0.0283461601582;NKX3-1:0.0193792310064;GLI1..3:-0.00660350499444;ZFP161:-0.00694950904568;HOX{A6,A7,B6,B7}:-0.0200563646482;SOX{8,9,10}:-0.020954227231;SMAD1..7,9:-0.0229183318381;PDX1:-0.0901377354881;ZNF384:-0.0903585726486;NKX2-2,8:-0.117582513056;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.122045213498;NHLH1,2:-0.132208082719;HOXA9_MEIS1:-0.175810576808;CUX2:-0.179947400854;EBF1:-0.205006126533;TBX4,5:-0.215025892048;PPARG:-0.219857199833;FOSL2:-0.236808441687;NR5A1,2:-0.238706039107;POU6F1:-0.242383023021;EP300:-0.270550596569;NR6A1:-0.299356403554;HNF4A_NR2F1,2:-0.307861627856;CDC5L:-0.319215235903;FOS_FOS{B,L1}_JUN{B,D}:-0.330289250605;E2F1..5:-0.340184497363;SRF:-0.344268108012;HES1:-0.346381199073;NFATC1..3:-0.350554775437;NRF1:-0.363764989218;CEBPA,B_DDIT3:-0.389612435976;RREB1:-0.393927841968;ALX4:-0.405938891931;MED-1{core}:-0.432908879421;PRRX1,2:-0.43339584461;ONECUT1,2:-0.479331825852;BACH2:-0.482316106312;MYFfamily:-0.488358558772;SOX2:-0.50770381351;NFIX:-0.549839114613;FOXD3:-0.59968180633;NFY{A,B,C}:-0.64239692341;PATZ1:-0.650601120307;HNF1A:-0.672081104382;RORA:-0.674624150051;MTE{core}:-0.684350113133;PRDM1:-0.713575974659;ARID5B:-0.737836917261;TFAP2{A,C}:-0.742820536352;NFE2L1:-0.744324851637;ZNF143:-0.745000766885;TAL1_TCF{3,4,12}:-0.783294339887;TFAP4:-0.793230258734;HOX{A4,D4}:-0.80396745364;SPZ1:-0.820392387065;NFE2:-0.825281252153;HAND1,2:-0.848919479329;RBPJ:-0.898611619594;YY1:-0.916976779227;HOX{A5,B5}:-0.917138150185;TFAP2B:-0.926858367676;STAT1,3:-0.927802668723;HLF:-0.933271714151;TFDP1:-0.936794900332;MZF1:-0.969897817184;T:-0.970684069497;NKX2-3_NKX2-5:-0.989481065386;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.990079360742;UFEwm:-1.01904018916;GATA4:-1.02435077287;REST:-1.03318501637;SOX17:-1.06311964266;MTF1:-1.06466864034;VSX1,2:-1.08620396589;XCPE1{core}:-1.1152248397;TBP:-1.13054509026;SP1:-1.13636995204;XBP1:-1.15259599137;HIC1:-1.16535408041;STAT2,4,6:-1.16674445196;TFCP2:-1.17669696573;MAZ:-1.1887840703;AR:-1.21248413064;POU3F1..4:-1.21712637406;MYBL2:-1.23478774568;TP53:-1.31122689699;PAX8:-1.32397451295;NFE2L2:-1.36354858337;HSF1,2:-1.3718362023;GFI1B:-1.40371898738;GFI1:-1.41615293106;LHX3,4:-1.41850758001;ADNP_IRX_SIX_ZHX:-1.43051835353;ZNF148:-1.45276740561;EN1,2:-1.4718666707;ZNF238:-1.50197433992;PAX5:-1.58409886669;NKX3-2:-1.62587918465;ZIC1..3:-1.65436068424;FOXM1:-1.67528292687;ZNF423:-1.67749012145;GZF1:-1.70926326279;TEAD1:-1.81397980531;ESRRA:-1.83386412073;NR1H4:-1.84479425666;GTF2A1,2:-1.87587696179;ZBTB6:-1.91792640585;GTF2I:-1.93413822457;GCM1,2:-2.15284140371;IKZF1:-2.15932113955;KLF4:-2.25168236696;TLX1..3_NFIC{dimer}:-2.49364280052;PAX1,9:-2.72760244819;NR3C1:-2.93827911982 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11544-120B5;search_select_hide=table117:FF:11544-120B5 | |||
}} | }} |
Latest revision as of 18:07, 4 June 2020
Name: | CD19+ B Cells, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12343,SRhi10066.TAGCTT |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12343
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12343
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.523 |
10 | 10 | 0.0162 |
100 | 100 | 0.408 |
101 | 101 | 0.542 |
102 | 102 | 0.782 |
103 | 103 | 0.443 |
104 | 104 | 0.666 |
105 | 105 | 0.865 |
106 | 106 | 0.163 |
107 | 107 | 0.07 |
108 | 108 | 0.261 |
109 | 109 | 0.974 |
11 | 11 | 0.733 |
110 | 110 | 0.736 |
111 | 111 | 0.219 |
112 | 112 | 0.712 |
113 | 113 | 0.0607 |
114 | 114 | 0.875 |
115 | 115 | 0.917 |
116 | 116 | 0.162 |
117 | 117 | 7.95649e-4 |
118 | 118 | 0.238 |
119 | 119 | 0.7 |
12 | 12 | 0.695 |
120 | 120 | 0.433 |
121 | 121 | 0.269 |
122 | 122 | 0.727 |
123 | 123 | 5.22776e-4 |
124 | 124 | 0.832 |
125 | 125 | 0.438 |
126 | 126 | 0.443 |
127 | 127 | 0.509 |
128 | 128 | 0.344 |
129 | 129 | 0.135 |
13 | 13 | 0.443 |
130 | 130 | 0.0515 |
131 | 131 | 0.41 |
132 | 132 | 0.0832 |
133 | 133 | 0.166 |
134 | 134 | 0.912 |
135 | 135 | 0.0192 |
136 | 136 | 0.355 |
137 | 137 | 0.00732 |
138 | 138 | 0.582 |
139 | 139 | 0.405 |
14 | 14 | 0.564 |
140 | 140 | 0.31 |
141 | 141 | 0.448 |
142 | 142 | 0.972 |
143 | 143 | 0.54 |
144 | 144 | 0.619 |
145 | 145 | 0.761 |
146 | 146 | 0.646 |
147 | 147 | 0.0461 |
148 | 148 | 0.24 |
149 | 149 | 0.873 |
15 | 15 | 0.681 |
150 | 150 | 0.772 |
151 | 151 | 0.877 |
152 | 152 | 0.803 |
153 | 153 | 0.467 |
154 | 154 | 0.391 |
155 | 155 | 0.0198 |
156 | 156 | 0.782 |
157 | 157 | 0.423 |
158 | 158 | 0.00503 |
159 | 159 | 0.463 |
16 | 16 | 0.321 |
160 | 160 | 0.448 |
161 | 161 | 0.854 |
162 | 162 | 0.545 |
163 | 163 | 0.354 |
164 | 164 | 0.0813 |
165 | 165 | 0.906 |
166 | 166 | 0.226 |
167 | 167 | 0.121 |
168 | 168 | 0.44 |
169 | 169 | 0.303 |
17 | 17 | 0.66 |
18 | 18 | 0.805 |
19 | 19 | 0.0923 |
2 | 2 | 0.0817 |
20 | 20 | 0.102 |
21 | 21 | 0.965 |
22 | 22 | 0.311 |
23 | 23 | 0.833 |
24 | 24 | 0.454 |
25 | 25 | 0.116 |
26 | 26 | 0.659 |
27 | 27 | 0.457 |
28 | 28 | 0.491 |
29 | 29 | 0.0864 |
3 | 3 | 0.444 |
30 | 30 | 0.0605 |
31 | 31 | 0.675 |
32 | 32 | 0.0183 |
33 | 33 | 0.513 |
34 | 34 | 0.389 |
35 | 35 | 0.263 |
36 | 36 | 0.0508 |
37 | 37 | 0.244 |
38 | 38 | 0.987 |
39 | 39 | 0.449 |
4 | 4 | 0.862 |
40 | 40 | 0.504 |
41 | 41 | 0.186 |
42 | 42 | 0.417 |
43 | 43 | 0.525 |
44 | 44 | 0.778 |
45 | 45 | 0.191 |
46 | 46 | 0.701 |
47 | 47 | 0.615 |
48 | 48 | 0.906 |
49 | 49 | 0.253 |
5 | 5 | 0.89 |
50 | 50 | 0.668 |
51 | 51 | 0.922 |
52 | 52 | 0.857 |
53 | 53 | 0.458 |
54 | 54 | 0.825 |
55 | 55 | 0.589 |
56 | 56 | 0.715 |
57 | 57 | 0.8 |
58 | 58 | 0.118 |
59 | 59 | 0.369 |
6 | 6 | 0.981 |
60 | 60 | 0.523 |
61 | 61 | 0.0755 |
62 | 62 | 0.204 |
63 | 63 | 0.825 |
64 | 64 | 0.917 |
65 | 65 | 0.678 |
66 | 66 | 0.332 |
67 | 67 | 0.986 |
68 | 68 | 0.928 |
69 | 69 | 0.377 |
7 | 7 | 0.559 |
70 | 70 | 0.116 |
71 | 71 | 0.122 |
72 | 72 | 0.445 |
73 | 73 | 0.74 |
74 | 74 | 0.949 |
75 | 75 | 0.0103 |
76 | 76 | 0.0065 |
77 | 77 | 0.00608 |
78 | 78 | 0.869 |
79 | 79 | 0.666 |
8 | 8 | 0.525 |
80 | 80 | 0.601 |
81 | 81 | 0.335 |
82 | 82 | 0.397 |
83 | 83 | 0.841 |
84 | 84 | 0.0552 |
85 | 85 | 0.864 |
86 | 86 | 0.0593 |
87 | 87 | 0.61 |
88 | 88 | 0.713 |
89 | 89 | 0.00336 |
9 | 9 | 0.594 |
90 | 90 | 0.891 |
91 | 91 | 0.287 |
92 | 92 | 0.878 |
93 | 93 | 0.712 |
94 | 94 | 0.302 |
95 | 95 | 0.11 |
96 | 96 | 0.63 |
97 | 97 | 0.508 |
98 | 98 | 0.242 |
99 | 99 | 1.49582e-5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12343
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)