FF:11554-120C6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062 | |DRA_sample_Accession=CAGE@SAMD00005209 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008292;DRR009164;DRZ000589;DRZ001974;DRZ011939;DRZ013324 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000252 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.99!96.14!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.72!65.79!PRRX2;;chr1:197886461..197886558,+!p1@LHX9!1.70!49.17!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.57!97.33!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!26.96!HOXC5;;chr6:10415276..10415341,-!p2@TFAP2A!1.43!31.37!TFAP2A;;chr11:46299199..46299233,+!p1@CREB3L1!1.38!115.81!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.38!30.86!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.32!22.55!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.30!18.99!TCF21;;chr4:81118647..81118666,+!p1@PRDM8!1.26!22.89!PRDM8;;chr6:1389789..1389821,+!p1@FOXF2!1.24!22.38!FOXF2;;chr2:239756739..239756755,+!p2@TWIST2!1.21!25.94!TWIST2;;chr6:10412600..10412637,-!p1@TFAP2A!1.20!24.93!TFAP2A;;chr15:57511609..57511651,+!p2@TCF12!1.20!24.76!TCF12;;chr2:239756671..239756732,+!p1@TWIST2!1.19!46.29!TWIST2;;chr7:27224842..27224872,-!p1@HOXA11!1.19!14.58!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.18!14.07!HOXA11;;chr10:28034739..28034756,-!p1@MKX!1.07!10.85!MKX;;chr3:128206762..128206781,-!p2@GATA2!1.06!65.62!GATA2;;chr11:65686802..65686818,+!p6@DRAP1!1.03!17.13!DRAP1;;chr5:72744594..72744609,-!p1@FOXD1!1.02!43.75!FOXD1;;chr2:176969228..176969260,+!p1@HOXD11!1.02!9.50!HOXD11;;chr12:54380404..54380433,+!p3@HOXC10!1.01!9.16!HOXC10;;chr5:321810..321877,+!p1@AHRR!0.99!28.83!AHRR;;chr11:65686732..65686756,+!p2@DRAP1!0.98!36.96!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.24!CREB3L1;;chr5:72744445..72744466,-!p2@FOXD1!0.95!13.40!FOXD1;;chr3:128212033..128212051,-!p1@GATA2!0.94!7.63!GATA2;;chr5:139492456..139492489,+!p7@PURA!0.91!7.12!PURA;;chr7:27213893..27213954,-!p1@HOXA10!0.91!7.12!HOXA10;;chr1:23885981..23886002,-!p1@ID3!0.90!1272.04!ID3;;chr12:53614115..53614154,-!p1@RARG!0.89!38.32!RARG;;chr16:86544113..86544145,+!p1@FOXF1!0.89!8.48!FOXF1;;chr2:223163706..223163730,-!p1@PAX3!0.89!6.78!PAX3;;chr5:2751762..2751784,-!p1@IRX2!0.89!6.78!IRX2;;chr17:59477233..59477263,+!p1@TBX2!0.88!21.20!TBX2;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.99!OSR1;;chr10:119303078..119303169,+!p2@EMX2!0.88!6.61!EMX2;;chr16:86600426..86600441,+!p1@FOXC2!0.87!16.62!FOXC2;;chr3:157823517..157823562,-!p1@SHOX2!0.86!6.78!SHOX2;;chr4:174450089..174450153,-!p2@HAND2!0.85!6.10!HAND2;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.93!KDM5D;;chr6:34204921..34204939,+!p3@HMGA1!0.83!186.01!HMGA1;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.44!PRRX1;;chr10:63809106..63809127,+!p1@ARID5B!0.82!82.07!ARID5B;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.64!DRAP1;;chr12:115121962..115121987,-!p1@TBX3!0.81!49.85!TBX3;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.38!SIX1;;chr2:66662281..66662308,+!p1@MEIS1!0.81!20.01!MEIS1;;chr2:85981107..85981120,+!p3@ATOH8!0.81!5.43!ATOH8;;chr16:31076332..31076388,-!p3@ZNF668!0.81!5.43!ZNF668;;chr12:54378923..54378966,+!p1@HOXC10!0.81!5.43!HOXC10;;chr10:63809013..63809041,+!p3@ARID5B!0.80!31.54!ARID5B;;chr12:54380036..54380091,+!p4@HOXC10!0.80!5.26!HOXC10;;chr19:13134772..13134822,+!p2@NFIX!0.79!7.80!NFIX;;chr11:65687222..65687240,+!p7@DRAP1!0.79!6.78!DRAP1;;chr6:85473156..85473210,-!p2@TBX18!0.79!6.44!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.78!121.91!AEBP1;;chr2:85980951..85981004,+!p1@ATOH8!0.78!8.48!ATOH8;;chr1:170633262..170633285,+!p3@PRRX1!0.78!5.77!PRRX1;;chr7:27239703..27239715,-!p1@HOXA13!0.78!5.09!HOXA13;;chr12:114845810..114845824,-!p1@TBX5!0.78!5.09!TBX5;;chr12:54379029..54379057,+!p2@HOXC10!0.78!5.09!HOXC10;;chr12:66218255..66218304,+!p3@HMGA2!0.77!14.24!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.77!7.80!ZBTB38;;chr20:30193083..30193098,+!p1@ID1!0.76!423.22!ID1;;chr11:65686952..65686975,+!p5@DRAP1!0.75!27.98!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.75!5.43!TFAP2A;;chr12:54393880..54393962,+!p1@HOXC9!0.75!4.58!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.75!4.58!HOXC5;;chr19:47523058..47523114,+!p1@NPAS1!0.75!4.58!NPAS1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.58!PRRX1;;chr16:51185172..51185197,-!p1@SALL1!0.75!4.58!SALL1;;chr8:67525443..67525459,-!p2@MYBL1!0.74!6.95!MYBL1;;chr5:72743793..72743855,-!p4@FOXD1!0.74!5.43!FOXD1;;chr15:76629123..76629151,+!p1@ISL2!0.74!5.09!ISL2;;chr11:65687243..65687276,+!p8@DRAP1!0.73!6.10!DRAP1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.73!4.41!RUNX1T1;;chr2:172967242..172967265,-!p2@DLX2!0.73!4.41!DLX2;;chr4:174451370..174451387,-!p1@HAND2!0.73!4.41!HAND2;;chr6:19837592..19837621,+!p1@ID4!0.72!29.16!ID4;;chr2:121493425..121493474,+!p1@GLI2!0.72!10.17!GLI2;;chr7:27205136..27205164,-!p1@HOXA9!0.72!4.24!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.43!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!0.70!6.44!PITX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.70!4.07!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.70!4.07!ZFY;;chr1:170633058..170633084,+!p5@PRRX1!0.70!4.07!PRRX1;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.58!BNC1;;chr6:100912752..100912778,-!p2@SIM1!0.69!3.90!SIM1;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr7:27239740..27239759,-!p2@HOXA13!0.69!3.90!HOXA13;;chr2:176969179..176969226,+!p2@HOXD11!0.69!3.90!HOXD11;;chr12:124873357..124873401,-!p1@NCOR2!0.68!50.70!NCOR2;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.33!HMGA2;;chr2:172967621..172967637,-!p1@DLX2!0.67!11.02!DLX2;;chr2:85981222..85981259,+!p2@ATOH8!0.67!6.44!ATOH8;;chr6:100912785..100912822,-!p1@SIM1!0.67!3.73!SIM1;;chr8:49833978..49833996,-!p1@SNAI2!0.66!85.63!SNAI2;;chr1:209979467..209979494,-!p1@IRF6!0.66!4.07!IRF6;;chr1:170632723..170632739,+!p8@PRRX1!0.66!3.56!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!0.66!3.56!SOX11;;chr2:85981073..85981091,+!p5@ATOH8!0.66!3.56!ATOH8;;chr18:52969674..52969685,-!p24@TCF4!0.66!3.56!TCF4;;chr3:52001448..52001478,-!p2@PCBP4!0.65!56.80!PCBP4;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.26!SNAI2;;chr15:37392724..37392757,-!p1@MEIS2!0.65!18.48!MEIS2;;chr14:24837368..24837401,+!p1@NFATC4!0.64!8.82!NFATC4;;chr15:96869255..96869291,+!p6@NR2F2!0.64!6.61!NR2F2;;chr15:37392703..37392717,-!p8@MEIS2!0.64!5.09!MEIS2;;chr12:114843940..114843955,-!p2@TBX5!0.64!3.39!TBX5;;chr1:119530493..119530572,-!p1@TBX15!0.64!3.39!TBX15;;chr2:172949484..172949522,+!p1@DLX1!0.64!3.39!DLX1;;chr6:85474299..85474324,-!p1@TBX18!0.63!6.44!TBX18;;chr8:99956662..99956684,+!p1@OSR2!0.63!5.43!OSR2;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.24!FOXD1;;chr15:96869292..96869320,+!p15@NR2F2!0.61!4.75!NR2F2;;chr6:1389824..1389840,+!p3@FOXF2!0.61!3.05!FOXF2;;chr1:197886421..197886432,+!p2@LHX9!0.61!3.05!LHX9;;chr10:63809077..63809089,+!p5@ARID5B!0.60!7.29!ARID5B;;chr12:115122005..115122016,-!p3@TBX3!0.60!3.73!TBX3;;chr2:66662249..66662267,+!p2@MEIS1!0.59!13.23!MEIS1;;chr12:80085061..80085119,-!p6@PAWR!0.59!5.09!PAWR;;chr18:53068911..53068935,-!p4@TCF4!0.59!3.39!TCF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.88!CREB3L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.59!2.88!TFAP2A;;chr18:56532100..56532130,+!p1@ZNF532!0.58!5.77!ZNF532;;chr15:37390850..37390909,-!p3@MEIS2!0.57!6.10!MEIS2;;chr17:59477275..59477286,+!p3@TBX2!0.57!3.90!TBX2;;chr5:43067636..43067674,+!p6@ZNF131!0.57!3.90!ZNF131;;chr19:45260775..45260838,+!p5@BCL3!0.57!3.73!BCL3;;chr1:110613238..110613272,-!p1@ALX3!0.57!2.71!ALX3;;chr1:170632115..170632136,+!p9@PRRX1!0.57!2.71!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.57!2.71!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.57!2.71!PRRX1;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.71!FOXL1;;chr4:4861385..4861398,+!p1@MSX1!0.56!9.16!MSX1;;chr3:52001426..52001447,-!p3@PCBP4!0.55!8.65!PCBP4;;chr7:19157043..19157088,-!p2@TWIST1!0.55!7.46!TWIST1;;chr7:1577899..1577943,+!p3@MAFK!0.55!2.54!MAFK;;chr2:172950227..172950249,+!p2@DLX1!0.55!2.54!DLX1;;chr2:176969097..176969109,+!p3@HOXD11!0.55!2.54!HOXD11;;chr2:85981008..85981025,+!p7@ATOH8!0.55!2.54!ATOH8;;chr3:128207349..128207386,-!p3@GATA2!0.55!2.54!GATA2;;chr15:96869165..96869183,+!p20@NR2F2!0.55!2.54!NR2F2;;chr15:66994561..66994597,+!p2@SMAD6!0.54!6.95!SMAD6;;chr2:71127699..71127744,+!p1@VAX2!0.54!5.93!VAX2;;chr10:63809090..63809097,+!p7@ARID5B!0.54!3.73!ARID5B;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.54!2.71!GLIS1;;chr2:85980919..85980942,+!p4@ATOH8!0.54!2.71!ATOH8;;chr11:65667884..65667895,-!p2@FOSL1!0.53!11.53!FOSL1;;chr11:46316699..46316719,+!p10@CREB3L1!0.53!2.37!CREB3L1;;chr12:54366975..54367001,+!p1@HOXC11!0.53!2.37!HOXC11;;chr12:54394309..54394336,+!p2@HOXC9!0.53!2.37!HOXC9;;chr2:176969124..176969155,+!p5@HOXD11!0.53!2.37!HOXD11;;chr2:85981027..85981047,+!p8@ATOH8!0.53!2.37!ATOH8;;chr6:1389989..1390019,+!p2@FOXF2!0.53!2.37!FOXF2;;chr19:12203100..12203132,+!p1@ZNF788!0.52!5.43!ZNF788;;chr12:66218183..66218209,+!p4@HMGA2!0.52!5.09!HMGA2;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.92!AEBP1;;chr12:66218212..66218244,+!p5@HMGA2!0.52!3.73!HMGA2;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.82!MYBL2;;chr15:96874012..96874042,+!p2@NR2F2!0.51!25.94!NR2F2;;chr11:65687158..65687216,+!p4@DRAP1!0.51!16.45!DRAP1;;chr16:54964740..54964789,+!p1@IRX5!0.51!3.56!IRX5;;chr11:12696071..12696086,+!p3@TEAD1!0.51!3.22!TEAD1;;chr9:16870659..16870675,-!p2@BNC2!0.51!2.88!BNC2;;chr15:37392534..37392562,-!p10@MEIS2!0.51!2.54!MEIS2;;chr15:80843484..80843499,+!p5@ARNT2!0.51!2.20!ARNT2;;chr2:66662396..66662407,+!p4@MEIS1!0.51!2.20!MEIS1;;chr9:16705069..16705086,-!p3@BNC2!0.51!2.20!BNC2;;chr12:115122318..115122331,-!p2@TBX3!0.51!2.20!TBX3;;chr5:176738887..176738934,-!p1@MXD3!0.50!18.82!MXD3;;chr18:72922743..72922761,+!p3@TSHZ1!0.50!8.82!TSHZ1;;chr15:66994663..66994680,+!p1@SMAD6!0.50!6.27!SMAD6;;chr12:66218836..66218888,+!p1@HMGA2!0.49!26.11!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.49!16.45!FOXM1;;chr4:1873011..1873063,+!p2@WHSC1!0.49!8.99!WHSC1;;chr20:42543506..42543549,+!p2@TOX2!0.49!6.10!TOX2;;chr6:1312325..1312340,+!p1@FOXQ1!0.49!3.90!FOXQ1;;chr20:62680984..62680999,-!p1@SOX18!0.49!3.05!SOX18;;chr7:44143997..44144008,+!p3@AEBP1!0.49!2.88!AEBP1;;chr6:31126291..31126399,+!p1@TCF19!0.48!25.43!TCF19;;chr12:124873852..124873881,-!p3@NCOR2!0.48!15.94!NCOR2;;chr10:63853436..63853442,+!p4@ARID5B!0.48!14.24!ARID5B;;chr2:121493492..121493537,+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| |expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.99!96.14!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.72!65.79!PRRX2;;chr1:197886461..197886558,+!p1@LHX9!1.70!49.17!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.57!97.33!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!26.96!HOXC5;;chr6:10415276..10415341,-!p2@TFAP2A!1.43!31.37!TFAP2A;;chr11:46299199..46299233,+!p1@CREB3L1!1.38!115.81!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.38!30.86!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.32!22.55!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.30!18.99!TCF21;;chr4:81118647..81118666,+!p1@PRDM8!1.26!22.89!PRDM8;;chr6:1389789..1389821,+!p1@FOXF2!1.24!22.38!FOXF2;;chr2:239756739..239756755,+!p2@TWIST2!1.21!25.94!TWIST2;;chr6:10412600..10412637,-!p1@TFAP2A!1.20!24.93!TFAP2A;;chr15:57511609..57511651,+!p2@TCF12!1.20!24.76!TCF12;;chr2:239756671..239756732,+!p1@TWIST2!1.19!46.29!TWIST2;;chr7:27224842..27224872,-!p1@HOXA11!1.19!14.58!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.18!14.07!HOXA11;;chr10:28034739..28034756,-!p1@MKX!1.07!10.85!MKX;;chr3:128206762..128206781,-!p2@GATA2!1.06!65.62!GATA2;;chr11:65686802..65686818,+!p6@DRAP1!1.03!17.13!DRAP1;;chr5:72744594..72744609,-!p1@FOXD1!1.02!43.75!FOXD1;;chr2:176969228..176969260,+!p1@HOXD11!1.02!9.50!HOXD11;;chr12:54380404..54380433,+!p3@HOXC10!1.01!9.16!HOXC10;;chr5:321810..321877,+!p1@AHRR!0.99!28.83!AHRR;;chr11:65686732..65686756,+!p2@DRAP1!0.98!36.96!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.24!CREB3L1;;chr5:72744445..72744466,-!p2@FOXD1!0.95!13.40!FOXD1;;chr3:128212033..128212051,-!p1@GATA2!0.94!7.63!GATA2;;chr5:139492456..139492489,+!p7@PURA!0.91!7.12!PURA;;chr7:27213893..27213954,-!p1@HOXA10!0.91!7.12!HOXA10;;chr1:23885981..23886002,-!p1@ID3!0.90!1272.04!ID3;;chr12:53614115..53614154,-!p1@RARG!0.89!38.32!RARG;;chr16:86544113..86544145,+!p1@FOXF1!0.89!8.48!FOXF1;;chr2:223163706..223163730,-!p1@PAX3!0.89!6.78!PAX3;;chr5:2751762..2751784,-!p1@IRX2!0.89!6.78!IRX2;;chr17:59477233..59477263,+!p1@TBX2!0.88!21.20!TBX2;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.99!OSR1;;chr10:119303078..119303169,+!p2@EMX2!0.88!6.61!EMX2;;chr16:86600426..86600441,+!p1@FOXC2!0.87!16.62!FOXC2;;chr3:157823517..157823562,-!p1@SHOX2!0.86!6.78!SHOX2;;chr4:174450089..174450153,-!p2@HAND2!0.85!6.10!HAND2;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.93!KDM5D;;chr6:34204921..34204939,+!p3@HMGA1!0.83!186.01!HMGA1;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.44!PRRX1;;chr10:63809106..63809127,+!p1@ARID5B!0.82!82.07!ARID5B;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.64!DRAP1;;chr12:115121962..115121987,-!p1@TBX3!0.81!49.85!TBX3;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.38!SIX1;;chr2:66662281..66662308,+!p1@MEIS1!0.81!20.01!MEIS1;;chr2:85981107..85981120,+!p3@ATOH8!0.81!5.43!ATOH8;;chr16:31076332..31076388,-!p3@ZNF668!0.81!5.43!ZNF668;;chr12:54378923..54378966,+!p1@HOXC10!0.81!5.43!HOXC10;;chr10:63809013..63809041,+!p3@ARID5B!0.80!31.54!ARID5B;;chr12:54380036..54380091,+!p4@HOXC10!0.80!5.26!HOXC10;;chr19:13134772..13134822,+!p2@NFIX!0.79!7.80!NFIX;;chr11:65687222..65687240,+!p7@DRAP1!0.79!6.78!DRAP1;;chr6:85473156..85473210,-!p2@TBX18!0.79!6.44!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.78!121.91!AEBP1;;chr2:85980951..85981004,+!p1@ATOH8!0.78!8.48!ATOH8;;chr1:170633262..170633285,+!p3@PRRX1!0.78!5.77!PRRX1;;chr7:27239703..27239715,-!p1@HOXA13!0.78!5.09!HOXA13;;chr12:114845810..114845824,-!p1@TBX5!0.78!5.09!TBX5;;chr12:54379029..54379057,+!p2@HOXC10!0.78!5.09!HOXC10;;chr12:66218255..66218304,+!p3@HMGA2!0.77!14.24!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.77!7.80!ZBTB38;;chr20:30193083..30193098,+!p1@ID1!0.76!423.22!ID1;;chr11:65686952..65686975,+!p5@DRAP1!0.75!27.98!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.75!5.43!TFAP2A;;chr12:54393880..54393962,+!p1@HOXC9!0.75!4.58!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.75!4.58!HOXC5;;chr19:47523058..47523114,+!p1@NPAS1!0.75!4.58!NPAS1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.58!PRRX1;;chr16:51185172..51185197,-!p1@SALL1!0.75!4.58!SALL1;;chr8:67525443..67525459,-!p2@MYBL1!0.74!6.95!MYBL1;;chr5:72743793..72743855,-!p4@FOXD1!0.74!5.43!FOXD1;;chr15:76629123..76629151,+!p1@ISL2!0.74!5.09!ISL2;;chr11:65687243..65687276,+!p8@DRAP1!0.73!6.10!DRAP1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.73!4.41!RUNX1T1;;chr2:172967242..172967265,-!p2@DLX2!0.73!4.41!DLX2;;chr4:174451370..174451387,-!p1@HAND2!0.73!4.41!HAND2;;chr6:19837592..19837621,+!p1@ID4!0.72!29.16!ID4;;chr2:121493425..121493474,+!p1@GLI2!0.72!10.17!GLI2;;chr7:27205136..27205164,-!p1@HOXA9!0.72!4.24!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.43!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!0.70!6.44!PITX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.70!4.07!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.70!4.07!ZFY;;chr1:170633058..170633084,+!p5@PRRX1!0.70!4.07!PRRX1;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.58!BNC1;;chr6:100912752..100912778,-!p2@SIM1!0.69!3.90!SIM1;;chr7:27205106..27205134,-!p2@HOXA9!0.69!3.90!HOXA9;;chr7:27239740..27239759,-!p2@HOXA13!0.69!3.90!HOXA13;;chr2:176969179..176969226,+!p2@HOXD11!0.69!3.90!HOXD11;;chr12:124873357..124873401,-!p1@NCOR2!0.68!50.70!NCOR2;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.33!HMGA2;;chr2:172967621..172967637,-!p1@DLX2!0.67!11.02!DLX2;;chr2:85981222..85981259,+!p2@ATOH8!0.67!6.44!ATOH8;;chr6:100912785..100912822,-!p1@SIM1!0.67!3.73!SIM1;;chr8:49833978..49833996,-!p1@SNAI2!0.66!85.63!SNAI2;;chr1:209979467..209979494,-!p1@IRF6!0.66!4.07!IRF6;;chr1:170632723..170632739,+!p8@PRRX1!0.66!3.56!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!0.66!3.56!SOX11;;chr2:85981073..85981091,+!p5@ATOH8!0.66!3.56!ATOH8;;chr18:52969674..52969685,-!p24@TCF4!0.66!3.56!TCF4;;chr3:52001448..52001478,-!p2@PCBP4!0.65!56.80!PCBP4;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.26!SNAI2;;chr15:37392724..37392757,-!p1@MEIS2!0.65!18.48!MEIS2;;chr14:24837368..24837401,+!p1@NFATC4!0.64!8.82!NFATC4;;chr15:96869255..96869291,+!p6@NR2F2!0.64!6.61!NR2F2;;chr15:37392703..37392717,-!p8@MEIS2!0.64!5.09!MEIS2;;chr12:114843940..114843955,-!p2@TBX5!0.64!3.39!TBX5;;chr1:119530493..119530572,-!p1@TBX15!0.64!3.39!TBX15;;chr2:172949484..172949522,+!p1@DLX1!0.64!3.39!DLX1;;chr6:85474299..85474324,-!p1@TBX18!0.63!6.44!TBX18;;chr8:99956662..99956684,+!p1@OSR2!0.63!5.43!OSR2;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.24!FOXD1;;chr15:96869292..96869320,+!p15@NR2F2!0.61!4.75!NR2F2;;chr6:1389824..1389840,+!p3@FOXF2!0.61!3.05!FOXF2;;chr1:197886421..197886432,+!p2@LHX9!0.61!3.05!LHX9;;chr10:63809077..63809089,+!p5@ARID5B!0.60!7.29!ARID5B;;chr12:115122005..115122016,-!p3@TBX3!0.60!3.73!TBX3;;chr2:66662249..66662267,+!p2@MEIS1!0.59!13.23!MEIS1;;chr12:80085061..80085119,-!p6@PAWR!0.59!5.09!PAWR;;chr18:53068911..53068935,-!p4@TCF4!0.59!3.39!TCF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.88!CREB3L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.59!2.88!TFAP2A;;chr18:56532100..56532130,+!p1@ZNF532!0.58!5.77!ZNF532;;chr15:37390850..37390909,-!p3@MEIS2!0.57!6.10!MEIS2;;chr17:59477275..59477286,+!p3@TBX2!0.57!3.90!TBX2;;chr5:43067636..43067674,+!p6@ZNF131!0.57!3.90!ZNF131;;chr19:45260775..45260838,+!p5@BCL3!0.57!3.73!BCL3;;chr1:110613238..110613272,-!p1@ALX3!0.57!2.71!ALX3;;chr1:170632115..170632136,+!p9@PRRX1!0.57!2.71!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.57!2.71!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.57!2.71!PRRX1;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.71!FOXL1;;chr4:4861385..4861398,+!p1@MSX1!0.56!9.16!MSX1;;chr3:52001426..52001447,-!p3@PCBP4!0.55!8.65!PCBP4;;chr7:19157043..19157088,-!p2@TWIST1!0.55!7.46!TWIST1;;chr7:1577899..1577943,+!p3@MAFK!0.55!2.54!MAFK;;chr2:172950227..172950249,+!p2@DLX1!0.55!2.54!DLX1;;chr2:176969097..176969109,+!p3@HOXD11!0.55!2.54!HOXD11;;chr2:85981008..85981025,+!p7@ATOH8!0.55!2.54!ATOH8;;chr3:128207349..128207386,-!p3@GATA2!0.55!2.54!GATA2;;chr15:96869165..96869183,+!p20@NR2F2!0.55!2.54!NR2F2;;chr15:66994561..66994597,+!p2@SMAD6!0.54!6.95!SMAD6;;chr2:71127699..71127744,+!p1@VAX2!0.54!5.93!VAX2;;chr10:63809090..63809097,+!p7@ARID5B!0.54!3.73!ARID5B;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.54!2.71!GLIS1;;chr2:85980919..85980942,+!p4@ATOH8!0.54!2.71!ATOH8;;chr11:65667884..65667895,-!p2@FOSL1!0.53!11.53!FOSL1;;chr11:46316699..46316719,+!p10@CREB3L1!0.53!2.37!CREB3L1;;chr12:54366975..54367001,+!p1@HOXC11!0.53!2.37!HOXC11;;chr12:54394309..54394336,+!p2@HOXC9!0.53!2.37!HOXC9;;chr2:176969124..176969155,+!p5@HOXD11!0.53!2.37!HOXD11;;chr2:85981027..85981047,+!p8@ATOH8!0.53!2.37!ATOH8;;chr6:1389989..1390019,+!p2@FOXF2!0.53!2.37!FOXF2;;chr19:12203100..12203132,+!p1@ZNF788!0.52!5.43!ZNF788;;chr12:66218183..66218209,+!p4@HMGA2!0.52!5.09!HMGA2;;chr7:44143978..44143989,+!p2@AEBP1!0.52!4.92!AEBP1;;chr12:66218212..66218244,+!p5@HMGA2!0.52!3.73!HMGA2;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.82!MYBL2;;chr15:96874012..96874042,+!p2@NR2F2!0.51!25.94!NR2F2;;chr11:65687158..65687216,+!p4@DRAP1!0.51!16.45!DRAP1;;chr16:54964740..54964789,+!p1@IRX5!0.51!3.56!IRX5;;chr11:12696071..12696086,+!p3@TEAD1!0.51!3.22!TEAD1;;chr9:16870659..16870675,-!p2@BNC2!0.51!2.88!BNC2;;chr15:37392534..37392562,-!p10@MEIS2!0.51!2.54!MEIS2;;chr15:80843484..80843499,+!p5@ARNT2!0.51!2.20!ARNT2;;chr2:66662396..66662407,+!p4@MEIS1!0.51!2.20!MEIS1;;chr9:16705069..16705086,-!p3@BNC2!0.51!2.20!BNC2;;chr12:115122318..115122331,-!p2@TBX3!0.51!2.20!TBX3;;chr5:176738887..176738934,-!p1@MXD3!0.50!18.82!MXD3;;chr18:72922743..72922761,+!p3@TSHZ1!0.50!8.82!TSHZ1;;chr15:66994663..66994680,+!p1@SMAD6!0.50!6.27!SMAD6;;chr12:66218836..66218888,+!p1@HMGA2!0.49!26.11!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.49!16.45!FOXM1;;chr4:1873011..1873063,+!p2@WHSC1!0.49!8.99!WHSC1;;chr20:42543506..42543549,+!p2@TOX2!0.49!6.10!TOX2;;chr6:1312325..1312340,+!p1@FOXQ1!0.49!3.90!FOXQ1;;chr20:62680984..62680999,-!p1@SOX18!0.49!3.05!SOX18;;chr7:44143997..44144008,+!p3@AEBP1!0.49!2.88!AEBP1;;chr6:31126291..31126399,+!p1@TCF19!0.48!25.43!TCF19;;chr12:124873852..124873881,-!p3@NCOR2!0.48!15.94!NCOR2;;chr10:63853436..63853442,+!p4@ARID5B!0.48!14.24!ARID5B;;chr2:121493492..121493537,+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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520walker%2520warburg%252c%2520donor1.CNhs11352.11554-120C6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520walker%2520warburg%252c%2520donor1.CNhs11352.11554-120C6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520walker%2520warburg%252c%2520donor1.CNhs11352.11554-120C6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520walker%2520warburg%252c%2520donor1.CNhs11352.11554-120C6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520walker%2520warburg%252c%2520donor1.CNhs11352.11554-120C6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11554-120C6 | |id=FF:11554-120C6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000252 | ||
|is_obsolete= | |||
|library_id=CNhs11352 | |||
|library_id_phase_based=2:CNhs11352 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11554 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11554 | |||
|name=Fibroblast - skin walker warburg, donor1 | |name=Fibroblast - skin walker warburg, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11352,LSID769,release014,COMPLETED | |profile_hcage=CNhs11352,LSID769,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
Line 57: | Line 79: | ||
|rna_weight_ug=158.94225 | |rna_weight_ug=158.94225 | ||
|sample_age=1 month old neonate | |sample_age=1 month old neonate | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 77: | Line 100: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=SRF:1.42197058416;HAND1,2:1.37254050216;HES1:1.30935337992;FOXL1:1.20871343224;NR3C1:1.1058265773;GCM1,2:1.07296940015;GZF1:1.0339685021;ALX4:1.03381185073;HOX{A5,B5}:1.03136473653;KLF4:1.0262398141;TEAD1:1.00959608225;ZNF238:0.959486041475;GFI1:0.930346002815;NFIX:0.869940242544;GTF2A1,2:0.863006063684;MYBL2:0.859508866725;TP53:0.841304620604;EBF1:0.827423546793;HSF1,2:0.815718642234;NKX2-2,8:0.814891244497;HBP1_HMGB_SSRP1_UBTF:0.766630988361;CDC5L:0.711604933525;UFEwm:0.70931380392;EN1,2:0.703373032021;ESR1:0.703123458886;GFI1B:0.665421789227;NKX3-1:0.660852723074;TFDP1:0.65403227733;GLI1..3:0.641076070179;ZIC1..3:0.632301318321;PDX1:0.628414416899;IKZF1:0.611346811701;MYB:0.585217736373;HMGA1,2:0.561421800805;NFE2L1:0.557501066264;GTF2I:0.545851234214;HIF1A:0.545760131571;GATA4:0.542873972081;PAX1,9:0.528701572524;ZNF384:0.528109743868;TFAP4:0.523493068349;PAX3,7:0.516185654276;TAL1_TCF{3,4,12}:0.513585049049;XCPE1{core}:0.51171774408;TBX4,5:0.505332016907;ZBTB6:0.475388696335;TLX1..3_NFIC{dimer}:0.474501585809;SOX17:0.473090051734;LHX3,4:0.461669148685;PRDM1:0.440425026803;MZF1:0.438156583792;NFE2L2:0.436023634843;LEF1_TCF7_TCF7L1,2:0.435588531953;RXR{A,B,G}:0.409005719607;E2F1..5:0.405369326482;MAZ:0.387264840499;TFAP2{A,C}:0.382220036577;TBP:0.379446244824;ELK1,4_GABP{A,B1}:0.376638599682;SMAD1..7,9:0.374926760658;XBP1:0.367358705047;NFATC1..3:0.359150102754;BACH2:0.35477761859;PAX8:0.354153451151;TFCP2:0.347562790728;NKX3-2:0.327161868534;POU5F1:0.323057166148;PRRX1,2:0.320033272028;RXRA_VDR{dimer}:0.309635238437;HMX1:0.288712482771;RREB1:0.279706518318;MTE{core}:0.276195861388;STAT5{A,B}:0.268864878985;ZNF423:0.257192623001;NFY{A,B,C}:0.2539771431;ADNP_IRX_SIX_ZHX:0.245473972287;MEF2{A,B,C,D}:0.232338150385;TFAP2B:0.193351705224;HOX{A4,D4}:0.178435228477;YY1:0.173634590091;FOXQ1:0.172675147782;AHR_ARNT_ARNT2:0.161210825281;ZNF143:0.14129381613;HLF:0.137172955781;FOS_FOS{B,L1}_JUN{B,D}:0.136567313268;ZNF148:0.120349025216;MAFB:0.107994324969;CRX:0.106135719104;NFE2:0.0941320682109;EVI1:0.0918302087326;HOXA9_MEIS1:0.0674193329513;NRF1:0.0653516164746;SOX{8,9,10}:0.0487419946455;FOSL2:0.0242489742682;POU2F1..3:0.0223501889744;AIRE:0.0119151405483;ATF6:-0.00440416539314;TOPORS:-0.0144873153198;NANOG{mouse}:-0.0188502220947;PBX1:-0.0363018637585;HIC1:-0.0398856515665;SPZ1:-0.0425189164237;PATZ1:-0.0485643673605;NKX2-3_NKX2-5:-0.0533621907677;NR6A1:-0.0560439664289;JUN:-0.066222543269;HNF1A:-0.0664638631864;NHLH1,2:-0.0703755591496;SOX5:-0.0832333030162;SP1:-0.0841258963387;FOXM1:-0.11219133229;POU3F1..4:-0.12058572139;ESRRA:-0.123461742858;PPARG:-0.123534508515;CEBPA,B_DDIT3:-0.13138531437;MTF1:-0.142108231566;RFX1:-0.147327280253;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.151107717759;SOX2:-0.161717238173;NKX6-1,2:-0.166913331492;HNF4A_NR2F1,2:-0.171897406039;POU1F1:-0.179030281303;FOX{I1,J2}:-0.194298685188;OCT4_SOX2{dimer}:-0.195231867182;NR1H4:-0.196111755539;DMAP1_NCOR{1,2}_SMARC:-0.204618758108;RUNX1..3:-0.226011906988;MYFfamily:-0.230089275344;PAX5:-0.238596467467;EP300:-0.239748806157;REST:-0.24065194614;FOXD3:-0.247873700596;FOXO1,3,4:-0.254391693234;NR5A1,2:-0.259007688752;TEF:-0.262008960466;HOX{A6,A7,B6,B7}:-0.267925415731;FOXA2:-0.268943375753;MED-1{core}:-0.292659535352;STAT2,4,6:-0.293537037899;PAX4:-0.294251900416;T:-0.309422693169;IRF1,2:-0.315948824412;ARID5B:-0.318711982514;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.33937519755;VSX1,2:-0.343014722235;EGR1..3:-0.346302706976;TGIF1:-0.354697317168;AR:-0.375217901;ELF1,2,4:-0.375487618223;STAT1,3:-0.380133777954;FOXP3:-0.383032775528;PITX1..3:-0.387588070139;NANOG:-0.398510464179;ETS1,2:-0.40125549634;NFKB1_REL_RELA:-0.41075560564;ALX1:-0.419381728608;SPI1:-0.437008540298;bHLH_family:-0.461741654476;GATA6:-0.46816369156;ZFP161:-0.468645378122;RBPJ:-0.470456849864;NFIL3:-0.505222330793;LMO2:-0.5158707428;ATF5_CREB3:-0.517790529238;ONECUT1,2:-0.521737541732;SPIB:-0.527540070939;BREu{core}:-0.532602132213;CUX2:-0.596290299735;BPTF:-0.599804019465;SNAI1..3:-0.611985734395;PAX2:-0.657699635583;POU6F1:-0.661612067833;DBP:-0.672903860545;ATF4:-0.677855407276;FOX{D1,D2}:-0.714224652486;FOXN1:-0.719650018926;IRF7:-0.73207313786;CREB1:-0.739654857705;PAX6:-0.746408198611;CDX1,2,4:-0.764539216046;NKX2-1,4:-0.815093215006;RFX2..5_RFXANK_RFXAP:-0.825315907039;FOXP1:-0.852677106796;ZEB1:-0.861428965126;SREBF1,2:-0.903349582237;FOX{F1,F2,J1}:-0.964403738014;IKZF2:-0.979962211958;ATF2:-1.04973811408;MYOD1:-1.0942355285;TLX2:-1.16885732192;RORA:-1.22099495908;ZBTB16:-1.31985586848 | |top_motifs=SRF:1.42197058416;HAND1,2:1.37254050216;HES1:1.30935337992;FOXL1:1.20871343224;NR3C1:1.1058265773;GCM1,2:1.07296940015;GZF1:1.0339685021;ALX4:1.03381185073;HOX{A5,B5}:1.03136473653;KLF4:1.0262398141;TEAD1:1.00959608225;ZNF238:0.959486041475;GFI1:0.930346002815;NFIX:0.869940242544;GTF2A1,2:0.863006063684;MYBL2:0.859508866725;TP53:0.841304620604;EBF1:0.827423546793;HSF1,2:0.815718642234;NKX2-2,8:0.814891244497;HBP1_HMGB_SSRP1_UBTF:0.766630988361;CDC5L:0.711604933525;UFEwm:0.70931380392;EN1,2:0.703373032021;ESR1:0.703123458886;GFI1B:0.665421789227;NKX3-1:0.660852723074;TFDP1:0.65403227733;GLI1..3:0.641076070179;ZIC1..3:0.632301318321;PDX1:0.628414416899;IKZF1:0.611346811701;MYB:0.585217736373;HMGA1,2:0.561421800805;NFE2L1:0.557501066264;GTF2I:0.545851234214;HIF1A:0.545760131571;GATA4:0.542873972081;PAX1,9:0.528701572524;ZNF384:0.528109743868;TFAP4:0.523493068349;PAX3,7:0.516185654276;TAL1_TCF{3,4,12}:0.513585049049;XCPE1{core}:0.51171774408;TBX4,5:0.505332016907;ZBTB6:0.475388696335;TLX1..3_NFIC{dimer}:0.474501585809;SOX17:0.473090051734;LHX3,4:0.461669148685;PRDM1:0.440425026803;MZF1:0.438156583792;NFE2L2:0.436023634843;LEF1_TCF7_TCF7L1,2:0.435588531953;RXR{A,B,G}:0.409005719607;E2F1..5:0.405369326482;MAZ:0.387264840499;TFAP2{A,C}:0.382220036577;TBP:0.379446244824;ELK1,4_GABP{A,B1}:0.376638599682;SMAD1..7,9:0.374926760658;XBP1:0.367358705047;NFATC1..3:0.359150102754;BACH2:0.35477761859;PAX8:0.354153451151;TFCP2:0.347562790728;NKX3-2:0.327161868534;POU5F1:0.323057166148;PRRX1,2:0.320033272028;RXRA_VDR{dimer}:0.309635238437;HMX1:0.288712482771;RREB1:0.279706518318;MTE{core}:0.276195861388;STAT5{A,B}:0.268864878985;ZNF423:0.257192623001;NFY{A,B,C}:0.2539771431;ADNP_IRX_SIX_ZHX:0.245473972287;MEF2{A,B,C,D}:0.232338150385;TFAP2B:0.193351705224;HOX{A4,D4}:0.178435228477;YY1:0.173634590091;FOXQ1:0.172675147782;AHR_ARNT_ARNT2:0.161210825281;ZNF143:0.14129381613;HLF:0.137172955781;FOS_FOS{B,L1}_JUN{B,D}:0.136567313268;ZNF148:0.120349025216;MAFB:0.107994324969;CRX:0.106135719104;NFE2:0.0941320682109;EVI1:0.0918302087326;HOXA9_MEIS1:0.0674193329513;NRF1:0.0653516164746;SOX{8,9,10}:0.0487419946455;FOSL2:0.0242489742682;POU2F1..3:0.0223501889744;AIRE:0.0119151405483;ATF6:-0.00440416539314;TOPORS:-0.0144873153198;NANOG{mouse}:-0.0188502220947;PBX1:-0.0363018637585;HIC1:-0.0398856515665;SPZ1:-0.0425189164237;PATZ1:-0.0485643673605;NKX2-3_NKX2-5:-0.0533621907677;NR6A1:-0.0560439664289;JUN:-0.066222543269;HNF1A:-0.0664638631864;NHLH1,2:-0.0703755591496;SOX5:-0.0832333030162;SP1:-0.0841258963387;FOXM1:-0.11219133229;POU3F1..4:-0.12058572139;ESRRA:-0.123461742858;PPARG:-0.123534508515;CEBPA,B_DDIT3:-0.13138531437;MTF1:-0.142108231566;RFX1:-0.147327280253;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.151107717759;SOX2:-0.161717238173;NKX6-1,2:-0.166913331492;HNF4A_NR2F1,2:-0.171897406039;POU1F1:-0.179030281303;FOX{I1,J2}:-0.194298685188;OCT4_SOX2{dimer}:-0.195231867182;NR1H4:-0.196111755539;DMAP1_NCOR{1,2}_SMARC:-0.204618758108;RUNX1..3:-0.226011906988;MYFfamily:-0.230089275344;PAX5:-0.238596467467;EP300:-0.239748806157;REST:-0.24065194614;FOXD3:-0.247873700596;FOXO1,3,4:-0.254391693234;NR5A1,2:-0.259007688752;TEF:-0.262008960466;HOX{A6,A7,B6,B7}:-0.267925415731;FOXA2:-0.268943375753;MED-1{core}:-0.292659535352;STAT2,4,6:-0.293537037899;PAX4:-0.294251900416;T:-0.309422693169;IRF1,2:-0.315948824412;ARID5B:-0.318711982514;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.33937519755;VSX1,2:-0.343014722235;EGR1..3:-0.346302706976;TGIF1:-0.354697317168;AR:-0.375217901;ELF1,2,4:-0.375487618223;STAT1,3:-0.380133777954;FOXP3:-0.383032775528;PITX1..3:-0.387588070139;NANOG:-0.398510464179;ETS1,2:-0.40125549634;NFKB1_REL_RELA:-0.41075560564;ALX1:-0.419381728608;SPI1:-0.437008540298;bHLH_family:-0.461741654476;GATA6:-0.46816369156;ZFP161:-0.468645378122;RBPJ:-0.470456849864;NFIL3:-0.505222330793;LMO2:-0.5158707428;ATF5_CREB3:-0.517790529238;ONECUT1,2:-0.521737541732;SPIB:-0.527540070939;BREu{core}:-0.532602132213;CUX2:-0.596290299735;BPTF:-0.599804019465;SNAI1..3:-0.611985734395;PAX2:-0.657699635583;POU6F1:-0.661612067833;DBP:-0.672903860545;ATF4:-0.677855407276;FOX{D1,D2}:-0.714224652486;FOXN1:-0.719650018926;IRF7:-0.73207313786;CREB1:-0.739654857705;PAX6:-0.746408198611;CDX1,2,4:-0.764539216046;NKX2-1,4:-0.815093215006;RFX2..5_RFXANK_RFXAP:-0.825315907039;FOXP1:-0.852677106796;ZEB1:-0.861428965126;SREBF1,2:-0.903349582237;FOX{F1,F2,J1}:-0.964403738014;IKZF2:-0.979962211958;ATF2:-1.04973811408;MYOD1:-1.0942355285;TLX2:-1.16885732192;RORA:-1.22099495908;ZBTB16:-1.31985586848 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11554-120C6;search_select_hide=table117:FF:11554-120C6 | |||
}} | }} |
Latest revision as of 18:08, 4 June 2020
Name: | Fibroblast - skin walker warburg, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11352 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11352
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11352
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.314 |
10 | 10 | 0.385 |
100 | 100 | 0.994 |
101 | 101 | 0.459 |
102 | 102 | 0.16 |
103 | 103 | 0.952 |
104 | 104 | 0.922 |
105 | 105 | 0.938 |
106 | 106 | 0.79 |
107 | 107 | 0.45 |
108 | 108 | 0.818 |
109 | 109 | 0.299 |
11 | 11 | 0.691 |
110 | 110 | 0.277 |
111 | 111 | 0.341 |
112 | 112 | 0.984 |
113 | 113 | 0.0337 |
114 | 114 | 0.784 |
115 | 115 | 0.583 |
116 | 116 | 0.171 |
117 | 117 | 0.416 |
118 | 118 | 0.745 |
119 | 119 | 0.681 |
12 | 12 | 0.851 |
120 | 120 | 0.744 |
121 | 121 | 0.323 |
122 | 122 | 0.775 |
123 | 123 | 1.63445e-5 |
124 | 124 | 0.837 |
125 | 125 | 0.709 |
126 | 126 | 0.398 |
127 | 127 | 0.896 |
128 | 128 | 0.997 |
129 | 129 | 0.962 |
13 | 13 | 0.775 |
130 | 130 | 0.0446 |
131 | 131 | 0.46 |
132 | 132 | 0.452 |
133 | 133 | 0.442 |
134 | 134 | 0.28 |
135 | 135 | 0.229 |
136 | 136 | 0.291 |
137 | 137 | 0.26 |
138 | 138 | 0.21 |
139 | 139 | 0.0156 |
14 | 14 | 0.274 |
140 | 140 | 0.212 |
141 | 141 | 0.0391 |
142 | 142 | 0.899 |
143 | 143 | 0.583 |
144 | 144 | 0.9 |
145 | 145 | 0.48 |
146 | 146 | 0.888 |
147 | 147 | 0.0974 |
148 | 148 | 0.0844 |
149 | 149 | 0.0842 |
15 | 15 | 0.251 |
150 | 150 | 0.362 |
151 | 151 | 0.939 |
152 | 152 | 0.053 |
153 | 153 | 0.868 |
154 | 154 | 0.477 |
155 | 155 | 0.0118 |
156 | 156 | 0.765 |
157 | 157 | 0.0475 |
158 | 158 | 0.00556 |
159 | 159 | 0.522 |
16 | 16 | 0.187 |
160 | 160 | 0.303 |
161 | 161 | 0.353 |
162 | 162 | 0.396 |
163 | 163 | 0.866 |
164 | 164 | 0.412 |
165 | 165 | 0.228 |
166 | 166 | 0.0686 |
167 | 167 | 0.186 |
168 | 168 | 0.733 |
169 | 169 | 0.0664 |
17 | 17 | 0.714 |
18 | 18 | 0.121 |
19 | 19 | 0.0269 |
2 | 2 | 0.345 |
20 | 20 | 0.182 |
21 | 21 | 0.162 |
22 | 22 | 0.215 |
23 | 23 | 0.612 |
24 | 24 | 0.975 |
25 | 25 | 0.856 |
26 | 26 | 0.72 |
27 | 27 | 0.71 |
28 | 28 | 0.232 |
29 | 29 | 0.747 |
3 | 3 | 0.98 |
30 | 30 | 0.035 |
31 | 31 | 0.945 |
32 | 32 | 2.1789e-5 |
33 | 33 | 0.999 |
34 | 34 | 0.66 |
35 | 35 | 0.355 |
36 | 36 | 0.074 |
37 | 37 | 0.229 |
38 | 38 | 0.613 |
39 | 39 | 0.477 |
4 | 4 | 0.495 |
40 | 40 | 0.889 |
41 | 41 | 0.68 |
42 | 42 | 0.951 |
43 | 43 | 0.924 |
44 | 44 | 0.954 |
45 | 45 | 0.437 |
46 | 46 | 0.616 |
47 | 47 | 0.882 |
48 | 48 | 0.843 |
49 | 49 | 0.463 |
5 | 5 | 0.737 |
50 | 50 | 0.262 |
51 | 51 | 0.997 |
52 | 52 | 0.899 |
53 | 53 | 0.381 |
54 | 54 | 0.681 |
55 | 55 | 0.866 |
56 | 56 | 0.93 |
57 | 57 | 0.665 |
58 | 58 | 0.323 |
59 | 59 | 0.0952 |
6 | 6 | 0.905 |
60 | 60 | 0.562 |
61 | 61 | 0.242 |
62 | 62 | 0.779 |
63 | 63 | 0.559 |
64 | 64 | 0.885 |
65 | 65 | 0.695 |
66 | 66 | 0.224 |
67 | 67 | 0.859 |
68 | 68 | 0.844 |
69 | 69 | 0.434 |
7 | 7 | 0.626 |
70 | 70 | 0.0388 |
71 | 71 | 0.474 |
72 | 72 | 0.982 |
73 | 73 | 0.0575 |
74 | 74 | 0.365 |
75 | 75 | 0.715 |
76 | 76 | 0.128 |
77 | 77 | 0.0128 |
78 | 78 | 0.125 |
79 | 79 | 0.0659 |
8 | 8 | 0.607 |
80 | 80 | 0.965 |
81 | 81 | 0.882 |
82 | 82 | 0.85 |
83 | 83 | 0.192 |
84 | 84 | 0.494 |
85 | 85 | 0.418 |
86 | 86 | 0.801 |
87 | 87 | 0.178 |
88 | 88 | 0.416 |
89 | 89 | 0.0758 |
9 | 9 | 0.429 |
90 | 90 | 0.0564 |
91 | 91 | 0.822 |
92 | 92 | 0.977 |
93 | 93 | 0.183 |
94 | 94 | 0.562 |
95 | 95 | 0.194 |
96 | 96 | 0.64 |
97 | 97 | 0.832 |
98 | 98 | 0.288 |
99 | 99 | 8.93986e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11352
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000252 human fibroblast - skin walker warburg sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000252 (human fibroblast - skin walker warburg sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)