FF:11555-120C7: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005869 | |DRA_sample_Accession=CAGE@SAMD00005869 | ||
|accession_numbers=CAGE;DRX008289;DRR009161;DRZ000586;DRZ001971 | |accession_numbers=CAGE;DRX008289;DRR009161;DRZ000586;DRZ001971;DRZ011936;DRZ013321 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | ||
Line 42: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11555-120C7 | |id=FF:11555-120C7 | ||
|is_a=EFO:0002091;;FF:0000251 | |is_a=EFO:0002091;;FF:0000251 | ||
Line 47: | Line 52: | ||
|library_id=CNhs11074 | |library_id=CNhs11074 | ||
|library_id_phase_based=2:CNhs11074 | |library_id_phase_based=2:CNhs11074 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11555 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11555 | |||
|name=Fibroblast - skin spinal muscular atrophy, donor1 | |name=Fibroblast - skin spinal muscular atrophy, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 54: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0191212414416402,0,0,0,0,-0.0869297233215061,0,-0.20144499144121,-0.282403560576942,0,0,0,0.190975487341205,0,0,0,0,0,0,0,0,0,-0.0799347035835476,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.07338830676488,0,-0.113204448940105,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.215994075261499,0,0,0,-0.0969923612426051,0,0,-0.023955320448217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0191212414416402,0,0.019760631540928,0,0,0,0,0.0382424828832804,0,0,-0.0117007141189789,-0.0146030490788059,0.0191212414416402,0.323169315074425,0,0.136149457396536,-0.059792868354426,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496818962931377,0,0,0,-0.0875274356726945,-0.0558891073597955,0,0,-0.0302099898629903,0,0,0 | |repeat_enrich_byfamily=0,0,0.0191212414416402,0,0,0,0,-0.0869297233215061,0,-0.20144499144121,-0.282403560576942,0,0,0,0.190975487341205,0,0,0,0,0,0,0,0,0,-0.0799347035835476,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.07338830676488,0,-0.113204448940105,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.215994075261499,0,0,0,-0.0969923612426051,0,0,-0.023955320448217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0191212414416402,0,0.019760631540928,0,0,0,0,0.0382424828832804,0,0,-0.0117007141189789,-0.0146030490788059,0.0191212414416402,0.323169315074425,0,0.136149457396536,-0.059792868354426,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496818962931377,0,0,0,-0.0875274356726945,-0.0558891073597955,0,0,-0.0302099898629903,0,0,0 | ||
|repeat_enrich_byname=0,0,0,0,-0.059792868354426,0,0.136149457396536,0,0,0.0382424828832804,0.0382424828832804,0.0382424828832804,0,0.323169315074425,0,0,0.233560540179631,0.0449608797854786,-0.0206152949136605,-0.143515142523472,0,0,0.00529177382854935,0,0.0382424828832804,0,0.0256710797723414,0,0,0,0.0382424828832804,0,0.5830329346848,0,0.0857369058072216,0,0.07338830676488,0.105901621330139,0,0.0431996302347084,0.0877164763357185,0,-0.0223848420317294,0.193738611059787,0,0,0,0,0.164994776802625,0,0.0152699736027959,0.293993347334812,-0.0306361007616017,0.0510700812638465,-0.00856217600909964,0,0,0,0.112517209593678,0.207771840035332,0,0,0.305899248851868,0.130701944999835,0,0,1.25859838017783,0,-0.0689178689900356,0.070601694171707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.477941163287358,0.014772007571019,0,0,0.0382424828832804,0,0.017350207289791,0,0,-0.157292080695068,0.255392296750808,-0.00230056934392425,-0.298703033530955,0,-0.229001420245033,-0.0606030394850665,0.0040620599310425,-0.0117007141189789,0.406165308749104,0.31641473478375,0,-0.0616080861138347,0.0220021000370617,-0.0204808502525383,-0.0432986646128537,-0.0129534513898698,0.0419546509831625,-0.169957921003584,0,0,0.00091086761766146,0.127601352090924,0,0.0207018775548593,0.258266757877938,-0.087812396130401,0.187763534082089,0.0940406565253202,0.0051829442180167,0.106604598930322,0.16250579081713,0.26142177053677,0.00857822918904895,0.278767831016366,0,0,0,0.0537881859563426,0.0694460941001621,-0.376176598818284,0.00274508326196807,0.0582685938051889,0.0678051963191683,0.0632407586383198,0.0459114887765006,-0.12187109781556,0,0.0382424828832804,0.162409443801896,0.07338830676488,0,0,0.011140827660851,0,-0.129657369076344,0.0666361670175004,-0.0684284973683387,0,-0.0506879673146645,0.0545563453398317,-0.155579039205222,0,-0.0815216062667746,0.236995774776936,-0.0359912802241373,-0.0432997911201112,0,-0.0434056598512411,0.249015510647663,0.0115168178434832,-0.0292060981576117,-0.0584468268118252,-0.124343623728064,-0.0643513141883426,0.0744144325645939,0.410267539000699,0.116377973720948,0.979233763294866,0,0.276000944058166,-0.488522644280319,-0.00555555234510452,-0.0365105062585001,0,0.175768744194035,0,-0.0880212842356012,0,-0.264047989382197,0.0556789464342209,-0.30313991718415,-0.27416543889867,0,-0.0489290020009965,0.282639552691451,0,-0.0610151310644134,0,0,0.153379354900921,-0.0272649332229655,-0.122005463817079,0.108879572193949,0,0.141789013463307,0,0.136149457396536,0.0205084715558315,-0.0710489735771826,0.0382424828832804,-0.144377081726322,-0.128463498748201,-0.320801958900565,-0.0777285905516537,0,0,0.0807289745631092,0,0.480739415465195,-0.500026442487891,0.136149457396536,0.0835248700832619,0.106262258862995,0,0.0989516460531785,0,0,0.038466309296323,0,0.149661250265261,0,0,-0.050765131831978,0,0,0,0.07338830676488,0.0191212414416402,0.0382424828832804,0,0,0,0.0191212414416402,0,0.0298938889908214,-0.158244693461356,-0.01307272596646,0,0,0,0,0,0,0,0,0,0.409061679605454,1.08205220552277,0,0.0131320417201162,0,0,0,0,-0.215723402553475,-0.203236562094724,0.0382424828832804,-0.0936202236143513,0,0,0,0,0.019760631540928,0,0,0,0.0529508106650695,0.0481711642764754,-0.387919449698278,0,0,0,-0.27695440160179,0,0,0.164427064187206,0.042112638722705,-0.12832823507566,0,0,0.277556868914361,0,0.067699133182835,-0.0815818795468414,0,0.101375845865932,0.574395193958427,0.0215047173941012,0,0,-0.261347131789888,0,0.0700591698442712,-0.000541036001370898,-0.0441277400823859,0,0.0591159101920632,0,0,0,0,0,0,0.210060398186965,0.170880302124994,0,0,0,0,0,0,0.239649574360395,0,0,0,0.083617903146023,-0.0922240566585104,0.07338830676488,0,0,0,0,0,0,-0.0241060230789031,-0.126135882840681,0,0,0,0,0,0,0,0,-0.0782372324291163,0,0,0,0,0,-0.0969923612426051,0,0,0,0.0382424828832804,-0.564807121153884,0,0,-0.171460510863375,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0174174647053084,-0.279377335436949,0,0,0,0,0,0,0,-0.20144499144121,0,0,0,0,-0.0756418908256968,0,0,0,0.254792215560595,0,-0.0869297233215061,0,0,0,0,0,0.0684676568136192,0,0,0,0,0,0,0,0,0,0,0,0.0191212414416402,0,0,0,0.562665054162792,0.0208847817919349,0.0382424828832804,0.0247953908666888,0,0,0.141562383544314,0,0,0,0,0,0,0.00535372935391295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0332166848931799,0,0,0,0,0.136149457396536,0,0,-0.0979578962680575,0,0.300018583473329,-0.0729115683588859,0,0,0,0,0,0,0.246118117746202,0.393686685719386,0.0141736524229621,0,0,0,0.125408727692421,0.215994075261499,0,0,0,0.413962028046294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0799347035835476,0,0,0,0,0,0,0,0,0,0,0,0,0.068074728698268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105901621330139,0,0,0,0,0,0,0.0382424828832804,-0.0148901218337763,0.0382424828832804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0769367722605072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07338830676488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.269279409553858,0,0,0,0,0,0,0,0,0.07338830676488,0,0,0,0,-0.0482220752390542,0,-0.0461341493467467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136149457396536,-0.512261559632432,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0191212414416402,0,0,0.262082872137155,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.113204448940105,0,0,0,0,0,0,0,0,0,0,0,0,-0.023077696266846,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.14260799172946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0191212414416402,-0.097792098552806,-0.0558891073597955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155480175797692,0.0191212414416402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0383778063255925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0191212414416402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0382424828832804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0382424828832804,0,0,0,0,0,0.113474253896451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0382424828832804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0235644211718365,0,0,0.0191212414416402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993637925862754,0,0,0,0,0,0,0,0,0,0,0.0382424828832804,0,0,0,0,0,0,0,0,0.0954877436706025,0,0,0,0,0,0,0,0,0.03669415338244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.04729442551622,0,0,0.0191212414416402,0,0,0,0,0.23689260335275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0046185420759217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0382424828832804,-0.012595344606743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.068074728698268,0,0,0,0.0564074587315584,0,0,0,0,0,0,0,0,0,0,0.07338830676488,0,0,0,0,0,0,0,-0.023955320448217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0191212414416402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0.0382424828832804,0,0.0542376521427955,0,0,0,0,0,0,0,0.0191212414416402,0,0,0,0,0,0.07338830676488,0,0,0,0,-0.116862475961117,0,0,-0.00404498559383556,0,-0.0937684769410088,0.0893426847101455,0,0,0,0,0,0.0478873690459033,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0403627733403112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.206683788558086,0,-0.139237773478507,-0.358832205638734,0,0,-0.178743288733243,0,-0.0115215531276872,-0.0477396614475454,0,0,-0.174992895090299,-0.403680737260553,0.190975487341205,0,0,0,0.07338830676488,0,0,0,0,0,0,0,0,0,0.105901621330139,0.136149457396536,0,0,-0.0568589461625992,-0.0298260612341744,0.0382424828832804,-0.187860767009219,0,0,-0.357398126403677,0,0,0,-0.0225711006087069 | |repeat_enrich_byname=0,0,0,0,-0.059792868354426,0,0.136149457396536,0,0,0.0382424828832804,0.0382424828832804,0.0382424828832804,0,0.323169315074425,0,0,0.233560540179631,0.0449608797854786,-0.0206152949136605,-0.143515142523472,0,0,0.00529177382854935,0,0.0382424828832804,0,0.0256710797723414,0,0,0,0.0382424828832804,0,0.5830329346848,0,0.0857369058072216,0,0.07338830676488,0.105901621330139,0,0.0431996302347084,0.0877164763357185,0,-0.0223848420317294,0.193738611059787,0,0,0,0,0.164994776802625,0,0.0152699736027959,0.293993347334812,-0.0306361007616017,0.0510700812638465,-0.00856217600909964,0,0,0,0.112517209593678,0.207771840035332,0,0,0.305899248851868,0.130701944999835,0,0,1.25859838017783,0,-0.0689178689900356,0.070601694171707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.477941163287358,0.014772007571019,0,0,0.0382424828832804,0,0.017350207289791,0,0,-0.157292080695068,0.255392296750808,-0.00230056934392425,-0.298703033530955,0,-0.229001420245033,-0.0606030394850665,0.0040620599310425,-0.0117007141189789,0.406165308749104,0.31641473478375,0,-0.0616080861138347,0.0220021000370617,-0.0204808502525383,-0.0432986646128537,-0.0129534513898698,0.0419546509831625,-0.169957921003584,0,0,0.00091086761766146,0.127601352090924,0,0.0207018775548593,0.258266757877938,-0.087812396130401,0.187763534082089,0.0940406565253202,0.0051829442180167,0.106604598930322,0.16250579081713,0.26142177053677,0.00857822918904895,0.278767831016366,0,0,0,0.0537881859563426,0.0694460941001621,-0.376176598818284,0.00274508326196807,0.0582685938051889,0.0678051963191683,0.0632407586383198,0.0459114887765006,-0.12187109781556,0,0.0382424828832804,0.162409443801896,0.07338830676488,0,0,0.011140827660851,0,-0.129657369076344,0.0666361670175004,-0.0684284973683387,0,-0.0506879673146645,0.0545563453398317,-0.155579039205222,0,-0.0815216062667746,0.236995774776936,-0.0359912802241373,-0.0432997911201112,0,-0.0434056598512411,0.249015510647663,0.0115168178434832,-0.0292060981576117,-0.0584468268118252,-0.124343623728064,-0.0643513141883426,0.0744144325645939,0.410267539000699,0.116377973720948,0.979233763294866,0,0.276000944058166,-0.488522644280319,-0.00555555234510452,-0.0365105062585001,0,0.175768744194035,0,-0.0880212842356012,0,-0.264047989382197,0.0556789464342209,-0.30313991718415,-0.27416543889867,0,-0.0489290020009965,0.282639552691451,0,-0.0610151310644134,0,0,0.153379354900921,-0.0272649332229655,-0.122005463817079,0.108879572193949,0,0.141789013463307,0,0.136149457396536,0.0205084715558315,-0.0710489735771826,0.0382424828832804,-0.144377081726322,-0.128463498748201,-0.320801958900565,-0.0777285905516537,0,0,0.0807289745631092,0,0.480739415465195,-0.500026442487891,0.136149457396536,0.0835248700832619,0.106262258862995,0,0.0989516460531785,0,0,0.038466309296323,0,0.149661250265261,0,0,-0.050765131831978,0,0,0,0.07338830676488,0.0191212414416402,0.0382424828832804,0,0,0,0.0191212414416402,0,0.0298938889908214,-0.158244693461356,-0.01307272596646,0,0,0,0,0,0,0,0,0,0.409061679605454,1.08205220552277,0,0.0131320417201162,0,0,0,0,-0.215723402553475,-0.203236562094724,0.0382424828832804,-0.0936202236143513,0,0,0,0,0.019760631540928,0,0,0,0.0529508106650695,0.0481711642764754,-0.387919449698278,0,0,0,-0.27695440160179,0,0,0.164427064187206,0.042112638722705,-0.12832823507566,0,0,0.277556868914361,0,0.067699133182835,-0.0815818795468414,0,0.101375845865932,0.574395193958427,0.0215047173941012,0,0,-0.261347131789888,0,0.0700591698442712,-0.000541036001370898,-0.0441277400823859,0,0.0591159101920632,0,0,0,0,0,0,0.210060398186965,0.170880302124994,0,0,0,0,0,0,0.239649574360395,0,0,0,0.083617903146023,-0.0922240566585104,0.07338830676488,0,0,0,0,0,0,-0.0241060230789031,-0.126135882840681,0,0,0,0,0,0,0,0,-0.0782372324291163,0,0,0,0,0,-0.0969923612426051,0,0,0,0.0382424828832804,-0.564807121153884,0,0,-0.171460510863375,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0174174647053084,-0.279377335436949,0,0,0,0,0,0,0,-0.20144499144121,0,0,0,0,-0.0756418908256968,0,0,0,0.254792215560595,0,-0.0869297233215061,0,0,0,0,0,0.0684676568136192,0,0,0,0,0,0,0,0,0,0,0,0.0191212414416402,0,0,0,0.562665054162792,0.0208847817919349,0.0382424828832804,0.0247953908666888,0,0,0.141562383544314,0,0,0,0,0,0,0.00535372935391295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0332166848931799,0,0,0,0,0.136149457396536,0,0,-0.0979578962680575,0,0.300018583473329,-0.0729115683588859,0,0,0,0,0,0,0.246118117746202,0.393686685719386,0.0141736524229621,0,0,0,0.125408727692421,0.215994075261499,0,0,0,0.413962028046294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0799347035835476,0,0,0,0,0,0,0,0,0,0,0,0,0.068074728698268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105901621330139,0,0,0,0,0,0,0.0382424828832804,-0.0148901218337763,0.0382424828832804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0769367722605072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07338830676488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.269279409553858,0,0,0,0,0,0,0,0,0.07338830676488,0,0,0,0,-0.0482220752390542,0,-0.0461341493467467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136149457396536,-0.512261559632432,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0191212414416402,0,0,0.262082872137155,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.113204448940105,0,0,0,0,0,0,0,0,0,0,0,0,-0.023077696266846,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.14260799172946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0191212414416402,-0.097792098552806,-0.0558891073597955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155480175797692,0.0191212414416402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0383778063255925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0191212414416402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0382424828832804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0382424828832804,0,0,0,0,0,0.113474253896451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0382424828832804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0235644211718365,0,0,0.0191212414416402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993637925862754,0,0,0,0,0,0,0,0,0,0,0.0382424828832804,0,0,0,0,0,0,0,0,0.0954877436706025,0,0,0,0,0,0,0,0,0.03669415338244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.04729442551622,0,0,0.0191212414416402,0,0,0,0,0.23689260335275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0046185420759217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0382424828832804,-0.012595344606743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.068074728698268,0,0,0,0.0564074587315584,0,0,0,0,0,0,0,0,0,0,0.07338830676488,0,0,0,0,0,0,0,-0.023955320448217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0191212414416402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0.0382424828832804,0,0.0542376521427955,0,0,0,0,0,0,0,0.0191212414416402,0,0,0,0,0,0.07338830676488,0,0,0,0,-0.116862475961117,0,0,-0.00404498559383556,0,-0.0937684769410088,0.0893426847101455,0,0,0,0,0,0.0478873690459033,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0403627733403112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.206683788558086,0,-0.139237773478507,-0.358832205638734,0,0,-0.178743288733243,0,-0.0115215531276872,-0.0477396614475454,0,0,-0.174992895090299,-0.403680737260553,0.190975487341205,0,0,0,0.07338830676488,0,0,0,0,0,0,0,0,0,0.105901621330139,0.136149457396536,0,0,-0.0568589461625992,-0.0298260612341744,0.0382424828832804,-0.187860767009219,0,0,-0.357398126403677,0,0,0,-0.0225711006087069 | ||
Line 91: | Line 101: | ||
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.23979697424;NKX2-2,8:2.04619402822;ZNF238:2.03848161531;GZF1:2.01960393322;NKX3-1:1.80534133482;HMGA1,2:1.78894932405;TAL1_TCF{3,4,12}:1.56022178647;MYBL2:1.55352029768;HIF1A:1.39201375776;ESR1:1.35692681081;TFAP4:1.33079986281;XBP1:1.32402917541;NKX3-2:1.30214803187;TEAD1:1.30006237637;NR3C1:1.22594586691;NFIX:1.14274231881;KLF4:1.10094062528;FOXD3:1.059977559;HOX{A5,B5}:1.05937085812;FOXL1:1.02792002873;GFI1B:1.02741963886;TEF:1.02231702162;NANOG{mouse}:1.00376983054;ATF6:0.985684879869;HSF1,2:0.978431529808;DBP:0.957787021903;UFEwm:0.936093882882;TP53:0.925758016977;NKX2-3_NKX2-5:0.915955470332;EVI1:0.915621897755;LHX3,4:0.904474041149;MZF1:0.903338777416;SRF:0.901195051383;SOX17:0.883480990183;EN1,2:0.871795709568;HAND1,2:0.86885364377;MAFB:0.868046512639;HOX{A4,D4}:0.805174140992;ALX4:0.793277627023;GTF2I:0.782957697919;TFAP2{A,C}:0.773704996893;MAZ:0.76118273557;ZNF384:0.752514253648;NFATC1..3:0.749836353201;GTF2A1,2:0.732888779696;GCM1,2:0.72443453554;RXR{A,B,G}:0.704787373146;PATZ1:0.698613690997;PRDM1:0.685029706433;NKX6-1,2:0.683426490689;PDX1:0.649933212019;BPTF:0.647032674072;NFE2L1:0.630516213065;HMX1:0.61332927997;SPZ1:0.605456732674;PAX1,9:0.598362579238;STAT5{A,B}:0.588067178105;TLX1..3_NFIC{dimer}:0.584575866201;ADNP_IRX_SIX_ZHX:0.580206801692;GATA4:0.576932335101;HES1:0.519434544261;NR6A1:0.515751346957;PRRX1,2:0.507819854035;GLI1..3:0.503587914361;MTE{core}:0.500578994894;HLF:0.479919833776;T:0.479871901601;FOXO1,3,4:0.473718114419;RXRA_VDR{dimer}:0.470498162865;STAT1,3:0.458662876186;IKZF1:0.424174149144;TFAP2B:0.418846093072;CDC5L:0.40686796035;NR1H4:0.399612525059;TBX4,5:0.396569364836;CRX:0.395920010959;PAX5:0.395222152698;POU5F1:0.378517552133;GFI1:0.377932750277;MYFfamily:0.375310146321;AIRE:0.373221623092;AHR_ARNT_ARNT2:0.348761691241;YY1:0.336380420348;FOX{I1,J2}:0.336309563575;EBF1:0.331998143723;TFCP2:0.330455518184;IRF1,2:0.317400252143;CEBPA,B_DDIT3:0.310446230235;SOX5:0.304557321401;PAX8:0.261440480429;FOXA2:0.261060927838;DMAP1_NCOR{1,2}_SMARC:0.252353062245;XCPE1{core}:0.226215075056;NFE2L2:0.205481525559;HOX{A6,A7,B6,B7}:0.180736173561;HIC1:0.179372521064;EGR1..3:0.179352145574;SMAD1..7,9:0.177045482475;ZNF148:0.163519181323;POU3F1..4:0.157199989495;ELK1,4_GABP{A,B1}:0.151250564908;MTF1:0.137370910075;EP300:0.136612019334;FOX{D1,D2}:0.115677123422;BACH2:0.109719916777;TFDP1:0.107321426691;STAT2,4,6:0.107133782789;NFE2:0.103232323648;RREB1:0.095764945259;RUNX1..3:0.0893081500213;MEF2{A,B,C,D}:0.0860062368058;ZFP161:0.0734367379234;ZIC1..3:0.0681492382393;NRF1:0.047962654754;NHLH1,2:0.0462710115701;ZBTB6:0.0458031630972;VSX1,2:0.0399474317903;ZNF143:0.0318155520713;HNF1A:0.0256405194487;TBP:0.0204803277459;TOPORS:0.0152482025781;MED-1{core}:0.00342155333633;LEF1_TCF7_TCF7L1,2:-0.0230052750459;FOS_FOS{B,L1}_JUN{B,D}:-0.0706373685838;SP1:-0.07660807924;POU1F1:-0.100985419454;RFX1:-0.10242962106;bHLH_family:-0.143664738561;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.152106110929;CDX1,2,4:-0.152662063066;ARID5B:-0.175440809686;REST:-0.190506400624;PAX3,7:-0.215689551558;ZNF423:-0.224187845762;MYB:-0.246342601193;NKX2-1,4:-0.248822714834;FOSL2:-0.250671911065;RBPJ:-0.280529870859;POU6F1:-0.289397181334;SOX2:-0.294364186676;ALX1:-0.312842614226;ATF5_CREB3:-0.34143724727;TGIF1:-0.357052026864;FOXM1:-0.365851338811;PAX4:-0.405414503275;SREBF1,2:-0.409728969438;HNF4A_NR2F1,2:-0.419775249329;E2F1..5:-0.430599398767;ATF4:-0.434047247419;CREB1:-0.441972344257;SPI1:-0.456173842696;NFKB1_REL_RELA:-0.45689427562;ETS1,2:-0.505931981606;JUN:-0.512513063522;ZBTB16:-0.516705156705;FOXN1:-0.533934142671;FOXP3:-0.537510887507;ATF2:-0.547769525438;TLX2:-0.558056586431;ELF1,2,4:-0.570729992981;IRF7:-0.572375899589;FOXP1:-0.578742939001;AR:-0.579355194354;NFIL3:-0.580076987212;SPIB:-0.589477032691;FOXQ1:-0.607209574932;PAX2:-0.613659204447;CUX2:-0.665025418095;PAX6:-0.665467184012;ONECUT1,2:-0.680971025791;RFX2..5_RFXANK_RFXAP:-0.695256920473;PBX1:-0.723176695235;ESRRA:-0.728396726906;GATA6:-0.732477166817;PPARG:-0.736761306173;IKZF2:-0.754716586208;BREu{core}:-0.760604724727;NFY{A,B,C}:-0.829541903058;FOX{F1,F2,J1}:-0.848760349797;OCT4_SOX2{dimer}:-0.848849913558;ZEB1:-0.850213702126;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.883805504519;POU2F1..3:-0.97263359835;RORA:-0.992041679705;PITX1..3:-0.995585912847;SNAI1..3:-1.00380873299;NANOG:-1.02476929313;NR5A1,2:-1.06397021496;SOX{8,9,10}:-1.15528631658;LMO2:-1.23749165898;HOXA9_MEIS1:-1.43309536516;MYOD1:-1.65849037737 | |top_motifs=HBP1_HMGB_SSRP1_UBTF:2.23979697424;NKX2-2,8:2.04619402822;ZNF238:2.03848161531;GZF1:2.01960393322;NKX3-1:1.80534133482;HMGA1,2:1.78894932405;TAL1_TCF{3,4,12}:1.56022178647;MYBL2:1.55352029768;HIF1A:1.39201375776;ESR1:1.35692681081;TFAP4:1.33079986281;XBP1:1.32402917541;NKX3-2:1.30214803187;TEAD1:1.30006237637;NR3C1:1.22594586691;NFIX:1.14274231881;KLF4:1.10094062528;FOXD3:1.059977559;HOX{A5,B5}:1.05937085812;FOXL1:1.02792002873;GFI1B:1.02741963886;TEF:1.02231702162;NANOG{mouse}:1.00376983054;ATF6:0.985684879869;HSF1,2:0.978431529808;DBP:0.957787021903;UFEwm:0.936093882882;TP53:0.925758016977;NKX2-3_NKX2-5:0.915955470332;EVI1:0.915621897755;LHX3,4:0.904474041149;MZF1:0.903338777416;SRF:0.901195051383;SOX17:0.883480990183;EN1,2:0.871795709568;HAND1,2:0.86885364377;MAFB:0.868046512639;HOX{A4,D4}:0.805174140992;ALX4:0.793277627023;GTF2I:0.782957697919;TFAP2{A,C}:0.773704996893;MAZ:0.76118273557;ZNF384:0.752514253648;NFATC1..3:0.749836353201;GTF2A1,2:0.732888779696;GCM1,2:0.72443453554;RXR{A,B,G}:0.704787373146;PATZ1:0.698613690997;PRDM1:0.685029706433;NKX6-1,2:0.683426490689;PDX1:0.649933212019;BPTF:0.647032674072;NFE2L1:0.630516213065;HMX1:0.61332927997;SPZ1:0.605456732674;PAX1,9:0.598362579238;STAT5{A,B}:0.588067178105;TLX1..3_NFIC{dimer}:0.584575866201;ADNP_IRX_SIX_ZHX:0.580206801692;GATA4:0.576932335101;HES1:0.519434544261;NR6A1:0.515751346957;PRRX1,2:0.507819854035;GLI1..3:0.503587914361;MTE{core}:0.500578994894;HLF:0.479919833776;T:0.479871901601;FOXO1,3,4:0.473718114419;RXRA_VDR{dimer}:0.470498162865;STAT1,3:0.458662876186;IKZF1:0.424174149144;TFAP2B:0.418846093072;CDC5L:0.40686796035;NR1H4:0.399612525059;TBX4,5:0.396569364836;CRX:0.395920010959;PAX5:0.395222152698;POU5F1:0.378517552133;GFI1:0.377932750277;MYFfamily:0.375310146321;AIRE:0.373221623092;AHR_ARNT_ARNT2:0.348761691241;YY1:0.336380420348;FOX{I1,J2}:0.336309563575;EBF1:0.331998143723;TFCP2:0.330455518184;IRF1,2:0.317400252143;CEBPA,B_DDIT3:0.310446230235;SOX5:0.304557321401;PAX8:0.261440480429;FOXA2:0.261060927838;DMAP1_NCOR{1,2}_SMARC:0.252353062245;XCPE1{core}:0.226215075056;NFE2L2:0.205481525559;HOX{A6,A7,B6,B7}:0.180736173561;HIC1:0.179372521064;EGR1..3:0.179352145574;SMAD1..7,9:0.177045482475;ZNF148:0.163519181323;POU3F1..4:0.157199989495;ELK1,4_GABP{A,B1}:0.151250564908;MTF1:0.137370910075;EP300:0.136612019334;FOX{D1,D2}:0.115677123422;BACH2:0.109719916777;TFDP1:0.107321426691;STAT2,4,6:0.107133782789;NFE2:0.103232323648;RREB1:0.095764945259;RUNX1..3:0.0893081500213;MEF2{A,B,C,D}:0.0860062368058;ZFP161:0.0734367379234;ZIC1..3:0.0681492382393;NRF1:0.047962654754;NHLH1,2:0.0462710115701;ZBTB6:0.0458031630972;VSX1,2:0.0399474317903;ZNF143:0.0318155520713;HNF1A:0.0256405194487;TBP:0.0204803277459;TOPORS:0.0152482025781;MED-1{core}:0.00342155333633;LEF1_TCF7_TCF7L1,2:-0.0230052750459;FOS_FOS{B,L1}_JUN{B,D}:-0.0706373685838;SP1:-0.07660807924;POU1F1:-0.100985419454;RFX1:-0.10242962106;bHLH_family:-0.143664738561;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.152106110929;CDX1,2,4:-0.152662063066;ARID5B:-0.175440809686;REST:-0.190506400624;PAX3,7:-0.215689551558;ZNF423:-0.224187845762;MYB:-0.246342601193;NKX2-1,4:-0.248822714834;FOSL2:-0.250671911065;RBPJ:-0.280529870859;POU6F1:-0.289397181334;SOX2:-0.294364186676;ALX1:-0.312842614226;ATF5_CREB3:-0.34143724727;TGIF1:-0.357052026864;FOXM1:-0.365851338811;PAX4:-0.405414503275;SREBF1,2:-0.409728969438;HNF4A_NR2F1,2:-0.419775249329;E2F1..5:-0.430599398767;ATF4:-0.434047247419;CREB1:-0.441972344257;SPI1:-0.456173842696;NFKB1_REL_RELA:-0.45689427562;ETS1,2:-0.505931981606;JUN:-0.512513063522;ZBTB16:-0.516705156705;FOXN1:-0.533934142671;FOXP3:-0.537510887507;ATF2:-0.547769525438;TLX2:-0.558056586431;ELF1,2,4:-0.570729992981;IRF7:-0.572375899589;FOXP1:-0.578742939001;AR:-0.579355194354;NFIL3:-0.580076987212;SPIB:-0.589477032691;FOXQ1:-0.607209574932;PAX2:-0.613659204447;CUX2:-0.665025418095;PAX6:-0.665467184012;ONECUT1,2:-0.680971025791;RFX2..5_RFXANK_RFXAP:-0.695256920473;PBX1:-0.723176695235;ESRRA:-0.728396726906;GATA6:-0.732477166817;PPARG:-0.736761306173;IKZF2:-0.754716586208;BREu{core}:-0.760604724727;NFY{A,B,C}:-0.829541903058;FOX{F1,F2,J1}:-0.848760349797;OCT4_SOX2{dimer}:-0.848849913558;ZEB1:-0.850213702126;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.883805504519;POU2F1..3:-0.97263359835;RORA:-0.992041679705;PITX1..3:-0.995585912847;SNAI1..3:-1.00380873299;NANOG:-1.02476929313;NR5A1,2:-1.06397021496;SOX{8,9,10}:-1.15528631658;LMO2:-1.23749165898;HOXA9_MEIS1:-1.43309536516;MYOD1:-1.65849037737 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11555-120C7;search_select_hide=table117:FF:11555-120C7 | |||
}} | }} |
Latest revision as of 18:08, 4 June 2020
Name: | Fibroblast - skin spinal muscular atrophy, donor1 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs11074 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Download raw sequence, BAM & CTSS | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11074
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11074
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.293 |
10 | 10 | 0.629 |
100 | 100 | 0.707 |
101 | 101 | 0.236 |
102 | 102 | 0.00565 |
103 | 103 | 0.776 |
104 | 104 | 0.498 |
105 | 105 | 0.664 |
106 | 106 | 0.2 |
107 | 107 | 0.938 |
108 | 108 | 0.924 |
109 | 109 | 0.158 |
11 | 11 | 0.264 |
110 | 110 | 0.432 |
111 | 111 | 0.0647 |
112 | 112 | 0.7 |
113 | 113 | 0.00194 |
114 | 114 | 0.64 |
115 | 115 | 0.717 |
116 | 116 | 0.424 |
117 | 117 | 0.109 |
118 | 118 | 0.285 |
119 | 119 | 0.227 |
12 | 12 | 0.327 |
120 | 120 | 0.959 |
121 | 121 | 0.518 |
122 | 122 | 0.114 |
123 | 123 | 2.73148e-4 |
124 | 124 | 0.634 |
125 | 125 | 0.873 |
126 | 126 | 0.858 |
127 | 127 | 0.385 |
128 | 128 | 0.471 |
129 | 129 | 0.305 |
13 | 13 | 0.207 |
130 | 130 | 0.132 |
131 | 131 | 0.909 |
132 | 132 | 0.264 |
133 | 133 | 0.546 |
134 | 134 | 0.342 |
135 | 135 | 0.29 |
136 | 136 | 0.0152 |
137 | 137 | 0.442 |
138 | 138 | 0.521 |
139 | 139 | 0.393 |
14 | 14 | 0.357 |
140 | 140 | 0.431 |
141 | 141 | 0.104 |
142 | 142 | 0.661 |
143 | 143 | 0.453 |
144 | 144 | 0.185 |
145 | 145 | 0.572 |
146 | 146 | 0.936 |
147 | 147 | 0.161 |
148 | 148 | 0.0614 |
149 | 149 | 0.0333 |
15 | 15 | 0.15 |
150 | 150 | 0.721 |
151 | 151 | 0.493 |
152 | 152 | 0.479 |
153 | 153 | 0.0549 |
154 | 154 | 0.927 |
155 | 155 | 0.0197 |
156 | 156 | 0.79 |
157 | 157 | 0.308 |
158 | 158 | 3.81296e-4 |
159 | 159 | 0.299 |
16 | 16 | 0.31 |
160 | 160 | 0.841 |
161 | 161 | 0.167 |
162 | 162 | 0.781 |
163 | 163 | 0.452 |
164 | 164 | 0.888 |
165 | 165 | 0.522 |
166 | 166 | 0.0142 |
167 | 167 | 0.217 |
168 | 168 | 0.837 |
169 | 169 | 0.443 |
17 | 17 | 0.555 |
18 | 18 | 0.29 |
19 | 19 | 0.0555 |
2 | 2 | 0.756 |
20 | 20 | 0.436 |
21 | 21 | 0.0326 |
22 | 22 | 0.465 |
23 | 23 | 0.639 |
24 | 24 | 0.277 |
25 | 25 | 0.231 |
26 | 26 | 0.804 |
27 | 27 | 0.981 |
28 | 28 | 0.256 |
29 | 29 | 0.634 |
3 | 3 | 0.941 |
30 | 30 | 0.242 |
31 | 31 | 0.851 |
32 | 32 | 9.20699e-10 |
33 | 33 | 0.469 |
34 | 34 | 0.904 |
35 | 35 | 0.755 |
36 | 36 | 0.0645 |
37 | 37 | 0.433 |
38 | 38 | 0.286 |
39 | 39 | 0.367 |
4 | 4 | 0.286 |
40 | 40 | 0.0292 |
41 | 41 | 0.966 |
42 | 42 | 0.478 |
43 | 43 | 0.573 |
44 | 44 | 0.437 |
45 | 45 | 0.613 |
46 | 46 | 0.616 |
47 | 47 | 0.241 |
48 | 48 | 0.31 |
49 | 49 | 0.235 |
5 | 5 | 0.693 |
50 | 50 | 0.881 |
51 | 51 | 0.688 |
52 | 52 | 0.879 |
53 | 53 | 0.163 |
54 | 54 | 0.988 |
55 | 55 | 0.0999 |
56 | 56 | 0.783 |
57 | 57 | 0.942 |
58 | 58 | 0.115 |
59 | 59 | 0.772 |
6 | 6 | 0.891 |
60 | 60 | 0.175 |
61 | 61 | 0.416 |
62 | 62 | 0.306 |
63 | 63 | 0.629 |
64 | 64 | 0.309 |
65 | 65 | 0.881 |
66 | 66 | 0.299 |
67 | 67 | 0.459 |
68 | 68 | 0.924 |
69 | 69 | 0.693 |
7 | 7 | 0.0879 |
70 | 70 | 0.887 |
71 | 71 | 0.69 |
72 | 72 | 0.788 |
73 | 73 | 0.624 |
74 | 74 | 0.165 |
75 | 75 | 0.21 |
76 | 76 | 0.797 |
77 | 77 | 0.432 |
78 | 78 | 0.06 |
79 | 79 | 0.13 |
8 | 8 | 0.63 |
80 | 80 | 0.621 |
81 | 81 | 0.646 |
82 | 82 | 0.801 |
83 | 83 | 0.258 |
84 | 84 | 0.423 |
85 | 85 | 0.659 |
86 | 86 | 0.736 |
87 | 87 | 0.709 |
88 | 88 | 0.38 |
89 | 89 | 0.63 |
9 | 9 | 0.843 |
90 | 90 | 0.889 |
91 | 91 | 0.799 |
92 | 92 | 0.635 |
93 | 93 | 0.782 |
94 | 94 | 0.692 |
95 | 95 | 0.901 |
96 | 96 | 0.914 |
97 | 97 | 0.517 |
98 | 98 | 0.0581 |
99 | 99 | 0.00849 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11074
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000251 human fibroblast - skin spinal muscular atrophy sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)