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(Created page with "{{f5samples |id=FF:11558-120D1 |name=Fibroblast - skin spinal muscular atrophy, donor2 |sample_id=11558 |rna_tube_id=120D1 |rna_box=120 |rna_position=D1 |sample_cell_lo...")
 
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{{f5samples
{{f5samples
|id=FF:11558-120D1
|DRA_sample_Accession=CAGE@SAMD00005679
|name=Fibroblast - skin spinal muscular atrophy, donor2
|accession_numbers=CAGE;DRX008290;DRR009162;DRZ000587;DRZ001972;DRZ011937;DRZ013322
|sample_id=11558
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|rna_tube_id=120D1
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|rna_box=120
|rna_position=D1
|sample_cell_lot=GM09677
|sample_cell_catalog=N/A
|sample_company=Coriell
|rna_lot_number=
|rna_catalog_number=custom
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=skin
|sample_donor(cell lot)=
|sample_sex=M
|sample_age=2 year old child
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=2.11000
|rna_od260/280=2.11000
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=Splicing (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=SPINAL MUSCULAR ATROPHY I; SMA1
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=148.73950
|rna_concentration=1.14400
|sample_note=
|profile_hcage=,LSID770,release011,MAPPING_mixup?
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002620
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0001062,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0002416,UBERON:0003102
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000251
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.08!135.14!PRRX1;;chr8:99956662..99956684,+!p1@OSR2!2.01!154.05!OSR2;;chr6:85474299..85474324,-!p1@TBX18!1.91!139.99!TBX18;;chr1:170633348..170633399,+!p2@PRRX1!1.87!98.60!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.83!177.49!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.73!52.37!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.69!62.40!PRRX2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.63!41.38!SEBOX;;chr4:111544219..111544240,-!p1@PITX2!1.61!40.09!PITX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.59!61.59!TFAP2A;;chr11:46299199..46299233,+!p1@CREB3L1!1.54!165.85!CREB3L1;;chr6:10415276..10415341,-!p2@TFAP2A!1.51!38.47!TFAP2A;;chr6:134210243..134210257,+!p1@TCF21!1.48!29.26!TCF21;;chr1:170633262..170633285,+!p3@PRRX1!1.44!30.07!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.39!39.44!TCF12;;chr2:239756739..239756755,+!p2@TWIST2!1.34!35.56!TWIST2;;chr7:44143925..44143970,+!p1@AEBP1!1.33!440.49!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.31!32.49!CREB3L1;;chr1:170633058..170633084,+!p5@PRRX1!1.31!19.24!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.29!59.00!TWIST2;;chr7:44143978..44143989,+!p2@AEBP1!1.28!32.49!AEBP1;;chr6:391743..391759,+!p1@IRF4!1.27!17.62!IRF4;;chr19:13134772..13134822,+!p2@NFIX!1.26!25.22!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!1.26!18.75!PRRX1;;chr6:50786591..50786614,+!p1@TFAP2B!1.26!17.30!TFAP2B;;chr3:138665937..138665968,-!p1@FOXL2!1.25!16.97!FOXL2;;chr4:111558135..111558198,-!p2@PITX2!1.25!16.97!PITX2;;chr12:85673977..85674015,+!p1@ALX1!1.25!16.97!ALX1;;chr10:119303078..119303169,+!p2@EMX2!1.21!15.19!EMX2;;chr10:63809013..63809041,+!p3@ARID5B!1.18!77.59!ARID5B;;chr5:2751762..2751784,-!p1@IRX2!1.18!14.22!IRX2;;chr15:80843484..80843499,+!p5@ARNT2!1.18!14.06!ARNT2;;chr7:44143997..44144008,+!p3@AEBP1!1.17!17.78!AEBP1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.16!13.58!SEBOX;;chr10:63809106..63809127,+!p1@ARID5B!1.15!174.74!ARID5B;;chr6:1389789..1389821,+!p1@FOXF2!1.14!17.62!FOXF2;;chr1:170632115..170632136,+!p9@PRRX1!1.12!12.29!PRRX1;;chr10:31610110..31610159,+!p2@ZEB1!1.11!11.96!ZEB1;;chr9:129376233..129376251,+!p2@LMX1B!1.11!11.96!LMX1B;;chr1:170632137..170632172,+!p10@PRRX1!1.10!11.64!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.10!11.48!RUNX1T1;;chr16:86544113..86544145,+!p1@FOXF1!1.09!13.90!FOXF1;;chr17:1959369..1959388,+!p2@HIC1!1.08!29.26!HIC1;;chr20:51588873..51588953,+!p1@TSHZ2!1.08!14.55!TSHZ2;;chr14:24837368..24837401,+!p1@NFATC4!1.06!24.73!NFATC4;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.35!KDM5D;;chr2:119605214..119605230,-!p1@EN1!1.05!10.35!EN1;;chr6:10412392..10412409,-!p4@TFAP2A!1.04!11.48!TFAP2A;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.19!NR2F1;;chr8:77593750..77593757,+!p3@ZFHX4!1.01!9.21!ZFHX4;;chr12:53614115..53614154,-!p1@RARG!1.00!48.98!RARG;;chr1:170632250..170632277,+!p7@PRRX1!1.00!8.89!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.00!8.89!PRRX1;;chr9:16870659..16870675,-!p2@BNC2!0.98!10.67!BNC2;;chr10:31607811..31607837,+!p6@ZEB1!0.98!8.57!ZEB1;;chr15:67418119..67418162,+!p5@SMAD3!0.97!9.21!SMAD3;;chr7:28448965..28448994,+!p2@CREB5!0.96!29.10!CREB5;;chr10:63809077..63809089,+!p5@ARID5B!0.96!18.10!ARID5B;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.15!OSR1;;chr10:63853436..63853442,+!p4@ARID5B!0.94!42.67!ARID5B;;chr18:52969674..52969685,-!p24@TCF4!0.94!7.76!TCF4;;chr1:170632683..170632696,+!p12@PRRX1!0.93!7.44!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.92!7.27!RUNX1T1;;chr15:67418177..67418204,+!p9@SMAD3!0.91!7.11!SMAD3;;chrY:2803415..2803468,+!p1@ZFY!0.91!7.11!ZFY;;chr12:85674018..85674039,+!p3@ALX1!0.90!6.95!ALX1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.89!71.12!GLIS2;;chr1:23696448..23696453,-!p5@ZNF436!0.89!8.41!ZNF436;;chr1:164528911..164528940,+!p7@PBX1!0.88!10.02!PBX1;;chr6:85473156..85473210,-!p2@TBX18!0.88!8.08!TBX18;;chr4:111558118..111558133,-!p5@PITX2!0.88!6.63!PITX2;;chr18:52969844..52969895,-!p27@TCF4!0.88!6.63!TCF4;;chr10:63809090..63809097,+!p7@ARID5B!0.87!9.21!ARID5B;;chr5:321810..321877,+!p1@AHRR!0.86!21.01!AHRR;;chr10:114710244..114710257,+!p3@TCF7L2!0.86!17.94!TCF7L2;;chr1:170632051..170632081,+!p16@PRRX1!0.86!6.30!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.86!6.30!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.86!6.30!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.86!6.30!PRRX1;;chr9:129376201..129376225,+!p1@LMX1B!0.85!6.14!LMX1B;;chr1:158979792..158979814,+!p2@IFI16!0.84!59.97!IFI16;;chr15:67418047..67418093,+!p4@SMAD3!0.84!7.60!SMAD3;;chr10:63809134..63809145,+!p6@ARID5B!0.83!13.90!ARID5B;;chr1:23696308..23696339,-!p2@ZNF436!0.83!12.93!ZNF436;;chr6:10412576..10412599,-!p5@TFAP2A!0.83!5.82!TFAP2A;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.66!CREB3L1;;chr18:53068911..53068935,-!p4@TCF4!0.81!6.30!TCF4;;chr1:110613238..110613272,-!p1@ALX3!0.81!5.50!ALX3;;chr19:13106214..13106382,+!p1@NFIX!0.80!132.55!NFIX;;chr10:31607702..31607755,+!p3@ZEB1!0.80!6.30!ZEB1;;chr10:119302232..119302265,+!p1@EMX2!0.80!5.33!EMX2;;chr17:1958388..1958404,+!p1@HIC1!0.79!35.72!HIC1;;chr10:119302508..119302559,+!p5@EMX2!0.79!5.17!EMX2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.42!TWIST1;;chr1:23696348..23696363,-!p4@ZNF436!0.78!5.66!ZNF436;;chr5:158526917..158526932,-!p1@EBF1!0.77!13.09!EBF1;;chr12:53625846..53625861,-!p6@RARG!0.77!4.85!RARG;;chr10:63661437..63661465,+!p2@ARID5B!0.76!101.03!ARID5B;;chr5:92918894..92918912,+!p2@NR2F1!0.76!16.97!NR2F1;;chr15:42749722..42749739,-!p2@ZFP106!0.76!9.05!ZFP106;;chr5:43067636..43067674,+!p6@ZNF131!0.76!6.63!ZNF131;;chr17:38498594..38498661,+!p2@RARA!0.75!16.81!RARA;;chr9:16870710..16870763,-!p1@BNC2!0.75!8.41!BNC2;;chr10:63853479..63853496,+!p21@ARID5B!0.75!4.69!ARID5B;;chr15:66994561..66994597,+!p2@SMAD6!0.74!11.48!SMAD6;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.57!IKZF2;;chr6:50786571..50786590,+!p2@TFAP2B!0.74!4.53!TFAP2B;;chr6:50789717..50789729,+!p4@TFAP2B!0.74!4.53!TFAP2B;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.53!ZNF668;;chr6:144329384..144329405,-!p1@PLAGL1!0.73!57.22!PLAGL1;;chr8:77593474..77593612,+!p1@ZFHX4!0.73!20.21!ZFHX4;;chr2:74229812..74229867,+!p1@TET3!0.73!11.80!TET3;;chr1:170632762..170632786,+!p13@PRRX1!0.73!4.36!PRRX1;;chr10:31608127..31608156,+!p1@ZEB1!0.72!88.10!ZEB1;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.20!PRRX1;;chr1:2985726..2985752,+!p2@PRDM16!0.72!4.20!PRDM16;;chr15:57511589..57511608,+!p4@TCF12!0.72!4.20!TCF12;;chr16:49698178..49698209,-!p1@ZNF423!0.72!4.20!ZNF423;;chr5:124082322..124082364,-!p1@ZNF608!0.71!11.48!ZNF608;;chr1:158969752..158969780,+!p6@IFI16!0.71!7.60!IFI16;;chr16:54964740..54964789,+!p1@IRX5!0.71!6.30!IRX5;;chr11:46299186..46299195,+!p3@CREB3L1!0.71!4.69!CREB3L1;;chr14:75894714..75894733,+!p1@JDP2!0.70!128.19!JDP2;;chr14:61116183..61116208,-!p1@SIX1!0.70!16.81!SIX1;;chr12:53625966..53626012,-!p2@RARG!0.70!11.80!RARG;;chr5:158526459..158526481,-!p2@EBF1!0.70!5.50!EBF1;;chr5:92919100..92919135,+!p3@NR2F1!0.70!5.01!NR2F1;;chr6:50786547..50786564,+!p3@TFAP2B!0.70!4.04!TFAP2B;;chr22:41763452..41763466,+!p2@TEF!0.70!4.04!TEF;;chr3:157823517..157823562,-!p1@SHOX2!0.69!4.20!SHOX2;;chr2:214014959..214015006,-!p4@IKZF2!0.69!3.88!IKZF2;;chr5:2751785..2751808,-!p2@IRX2!0.69!3.88!IRX2;;chr16:54964899..54964914,+!p2@IRX5!0.69!3.88!IRX5;;chr19:13135386..13135435,+!p4@NFIX!0.69!3.88!NFIX;;chr7:42276787..42276815,-!p1@GLI3!0.68!11.15!GLI3;;chr8:49833948..49833973,-!p2@SNAI2!0.67!26.83!SNAI2;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.24!HMGA2;;chr15:66995062..66995065,+!p8@SMAD6!0.67!3.72!SMAD6;;chr3:138665969..138665993,-!p2@FOXL2!0.67!3.72!FOXL2;;chr19:47523058..47523114,+!p1@NPAS1!0.67!3.72!NPAS1;;chr1:170633245..170633256,+!p14@PRRX1!0.67!3.72!PRRX1;;chr8:106330656..106330684,+!p1@ZFPM2!0.66!10.35!ZFPM2;;chr8:60031619..60031676,-!p1@TOX!0.66!8.41!TOX;;chr11:707063..707088,-!p4@DEAF1!0.66!4.69!DEAF1;;chr5:122424955..122424988,+!p2@PRDM6!0.66!3.56!PRDM6;;chr1:158969727..158969749,+!p11@IFI16!0.66!3.56!IFI16;;chr7:28725740..28725778,+!p1@CREB5!0.65!35.89!CREB5;;chr7:150974206..150974255,-!p1@SMARCD3!0.65!25.22!SMARCD3;;chr6:32095523..32095564,-!p2@ATF6B!0.65!5.01!ATF6B;;chr6:1610293..1610310,+!p1@FOXC1!0.64!6.14!FOXC1;;chr5:92919068..92919082,+!p5@NR2F1!0.64!4.20!NR2F1;;chr11:47279248..47279264,+!p3@NR1H3!0.64!3.88!NR1H3;;chr6:85474198..85474212,-!p3@TBX18!0.64!3.39!TBX18;;chr2:119604456..119604501,-!p2@EN1!0.64!3.39!EN1;;chr4:111544254..111544270,-!p3@PITX2!0.64!3.39!PITX2;;chrY:21906761..21906810,-!p2@KDM5D!0.64!3.39!KDM5D;;chr3:178789522..178789564,-!p2@ZMAT3!0.63!27.96!ZMAT3;;chr3:128206762..128206781,-!p2@GATA2!0.63!23.76!GATA2;;chr11:8102749..8102769,+!p2@TUB!0.63!6.95!TUB;;chr2:214015343..214015366,-!p3@IKZF2!0.63!3.23!IKZF2;;chr15:67430351..67430366,+!p10@SMAD3!0.63!3.23!SMAD3;;chr1:164528445..164528459,+!p2@PBX1!0.62!11.48!PBX1;;chr7:113726357..113726443,+!p1@FOXP2!0.62!5.98!FOXP2;;chr15:80696703..80696754,+!p1@ARNT2!0.62!4.53!ARNT2;;chr19:13136241..13136258,+!p7@NFIX!0.62!4.53!NFIX;;chr4:26322616..26322652,+!p1@RBPJ!0.61!80.34!RBPJ;;chr1:170633100..170633112,+!p19@PRRX1!0.61!3.07!PRRX1;;chr1:221053444..221053473,+!p8@HLX!0.61!3.07!HLX;;chr6:1389989..1390019,+!p2@FOXF2!0.61!3.07!FOXF2;;chr11:47236584..47236679,+!p1@DDB2!0.60!39.28!DDB2;;chr11:65687362..65687436,+!p3@DRAP1!0.60!16.16!DRAP1;;chr5:72744594..72744609,-!p1@FOXD1!0.60!16.00!FOXD1;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.27!GLI2;;chr17:20492136..20492165,+!p1@MEIS3P2!0.59!5.01!MEIS3P2;;chr5:3595934..3595957,+!p2@IRX1!0.59!2.91!IRX1;;chr8:99956759..99956767,+!p5@OSR2!0.59!2.91!OSR2;;chr10:119302645..119302712,+!p3@EMX2!0.59!2.91!EMX2;;chr1:170632907..170632916,+!p22@PRRX1!0.59!2.91!PRRX1;;chr9:110252035..110252057,-!p1@KLF4!0.58!55.93!KLF4;;chr10:77161504..77161530,-!p1@ZNF503!0.58!46.23!ZNF503;;chr9:2158443..2158481,+!p2@SMARCA2!0.58!9.38!SMARCA2;;chr6:126112074..126112144,+!p1@NCOA7!0.57!44.61!NCOA7;;chr16:8962202..8962222,-!p3@CARHSP1!0.57!5.33!CARHSP1;;chr5:134369905..134369972,-!p1@PITX1!0.57!4.53!PITX1;;chr8:106330696..106330719,+!p2@ZFPM2!0.57!3.72!ZFPM2;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.75!NR3C1;;chr1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589!0.34!4.69!ZNF589;;chr19:58570605..58570655,+!p1@ZNF135!0.34!2.75!ZNF135;;chr9:4299552..4299598,-!p5@GLIS3!0.34!2.59!GLIS3;;chr17:79881332..79881348,-!p3@MAFG!0.34!2.10!MAFG;;chr10:51565188..51565236,+!p1@NCOA4!0.33!145.16!NCOA4;;chr11:10879572..10879591,-!p2@ZBED5!0.33!25.38!ZBED5;;chr18:32820990..32821031,+!p1@ZNF397!0.33!18.91!ZNF397;;chr19:57901208..57901280,+!p1@ZNF548!0.33!14.87!ZNF548;;chr9:4300050..4300118,-!p1@GLIS3!0.33!11.96!GLIS3;;chr7:99156434..99156510,+!p2@ZNF655!0.33!10.99!ZNF655;;chr19:35225121..35225175,+!p1@ZNF181!0.33!10.18!ZNF181;;chr6:28317685..28317761,+!p1@ZKSCAN3!0.33!9.21!ZKSCAN3;;chr19:38270215..38270251,-!p1@ZNF573!0.33!7.27!ZNF573;;chr19:53758094..53758147,-!p1@ZNF677!0.33!6.63!ZNF677;;chr2:42795651..42795676,+!p3@MTA3!0.33!4.36!MTA3;;chr4:76439649..76439662,+!p2@THAP6!0.33!3.88!THAP6;;chr17:42298339..42298361,-!p5@UBTF!0.33!3.56!UBTF;;chr9:2017383..2017417,+!p5@SMARCA2!0.33!3.56!SMARCA2;;chr13:41635029..41635044,-!p4@ELF1!0.33!3.39!ELF1;;chr12:53774035..53774058,+!p4@SP1!0.33!3.07!SP1;;chr19:52956798..52956843,+!p1@ZNF578!0.33!3.07!ZNF578;;chr19:58373157..58373159,+!p4@ZNF587!0.33!2.75!ZNF587;;chr10:63851669..63851682,+!p10@ARID5B!0.33!1.29!ARID5B;;chr1:170632414..170632421,+!p28@PRRX1!0.33!1.13!PRRX1;;chr1:170632583..170632590,+!p26@PRRX1!0.33!1.13!PRRX1;;chr20:42602000..42602034,+!p5@TOX2!0.33!1.13!TOX2;;chr2:85981107..85981120,+!p3@ATOH8!0.33!1.13!ATOH8;;chr4:121843402..121843416,+!p4@PRDM5!0.33!1.13!PRDM5;;chr7:42276771..42276782,-!p4@GLI3!0.33!1.13!GLI3;;chr8:93074872..93074884,-!p10@RUNX1T1!0.33!1.13!RUNX1T1;;chr8:93107451..93107468,-!p2@RUNX1T1!0.33!1.13!RUNX1T1;;chr15:67391010..67391046,+!p13@SMAD3!0.33!1.13!SMAD3;;chr15:80843472..80843480,+!p22@ARNT2!0.33!1.13!ARNT2;;chr16:86612320..86612394,+!p1@FOXL1!0.33!1.13!FOXL1;;chr17:7387459..7387470,-!p10@ZBTB4!0.33!1.13!ZBTB4;;chr5:135468516..135468621,+!p1@SMAD5!0.32!72.74!SMAD5;;chr1:61548225..61548299,+!p1@NFIA!0.32!24.25!NFIA;;chr9:2015335..2015370,+!p1@SMARCA2!0.32!22.79!SMARCA2;;chr2:113033164..113033219,+!p1@ZC3H6!0.32!15.52!ZC3H6;;chr12:54772960..54773015,-!p3@ZNF385A!0.32!8.57!ZNF385A;;chr12:53856284..53856299,+!p3@PCBP2!0.32!4.69!PCBP2;;chr1:164528340..164528379,+!p4@PBX1!0.32!3.88!PBX1;;chr4:121843985..121844024,-!p2@PRDM5!0.32!3.39!PRDM5;;chr13:41635104..41635124,-!p6@ELF1!0.32!2.42!ELF1;;chr6:144329531..144329546,-!p5@PLAGL1!0.32!2.26!PLAGL1;;chr8:60031762..60031803,-!p3@TOX!0.32!1.94!TOX;;chr17:38792325..38792330,-!p3@SMARCE1!0.32!1.94!SMARCE1;;chr11:65687243..65687276,+!p8@DRAP1!0.32!1.78!DRAP1;;chr6:151712922..151712942,-!p6@ZBTB2!0.32!1.78!ZBTB2;;chr12:66218443..66218461,+!p8@HMGA2!0.32!1.62!HMGA2;;chr18:72922858..72922897,+!p4@TSHZ1!0.32!1.45!TSHZ1;;chr4:81104958..81104981,+!p5@PRDM8!0.32!1.45!PRDM8;;chr5:138629417..138629446,+!p1@MATR3!0.31!170.05!MATR3;;chr6:34204921..34204939,+!p3@HMGA1!0.31!55.77!HMGA1;;chr7:28220354..28220441,-!p1@JAZF1!0.31!28.13!JAZF1;;chr19:57791328..57791377,+!p2@ZNF460!0.31!22.15!ZNF460;;chr1:197170394..197170444,-!p@chr1:197170394..197170444,-!0.31!19.24!ZBTB41;;chr15:96874012..96874042,+!p2@NR2F2!0.31!16.00!NR2F2;;chr14:73360799..73360817,-!p1@DPF3!0.31!5.66!DPF3;;chr19:44455368..44455396,+!p1@ZNF221!0.31!5.50!ZNF221;;chr19:44645731..44645786,+!p2@ZNF226,p2@ZNF234!0.31!5.01!ZNF234;;chr19:37329254..37329295,-!p1@ZNF790!0.31!3.88!ZNF790;;chr19:56152332..56152347,+!p4@ZNF580!0.31!3.39!ZNF580;;chr12:53848505..53848532,+!p4@PCBP2!0.31!3.39!PCBP2;;chr14:64971014..64971044,+!p4@ZBTB1!0.31!2.26!ZBTB1;;chr3:107244229..107244254,+!p3@BBX!0.31!2.26!BBX;;chr5:178322893..178322931,+!p1@ZFP2!0.31!1.94!ZFP2;;chr5:142783365..142783379,-!p10@NR3C1!0.31!1.62!NR3C1;;chr11:12695944..12695989,+!p1@TEAD1!0.30!64.50!TEAD1;;chr19:3366570..3366619,+!p1@NFIC!0.30!57.22!NFIC;;chr14:21566731..21566836,-!p1@ZNF219!0.30!18.75!ZNF219;;chr2:42795839..42795887,+!p2@MTA3!0.30!11.80!MTA3;;chr19:2841459..2841490,+!p1@ZNF555!0.30!9.21!ZNF555;;chr19:9546227..9546257,-!p2@ZNF266!0.30!8.73!ZNF266;;chr6:28220023..28220053,-!p1@ZKSCAN4!0.30!7.27!ZKSCAN4;;chr11:65686732..65686756,+!p2@DRAP1!0.30!6.95!DRAP1;;chr3:71007344..71007348,-!p6@FOXP1!0.30!6.63!FOXP1;;chr19:53758058..53758088,-!p2@ZNF677!0.30!5.17!ZNF677;;chr19:8942909..8942953,-!p2@ZNF558!0.30!3.56!ZNF558;;chr9:2016724..2016752,+!p7@SMARCA2!0.30!2.75!SMARCA2;;chr16:30582888..30582923,-!p3@ZNF688!0.30!2.10!ZNF688;;chr16:54320646..54320672,-!p2@IRX3!0.30!1.94!IRX3;;chr4:81104895..81104920,+!p2@PRDM8!0.30!1.94!PRDM8;;chr15:66994615..66994630,+!p3@SMAD6!0.30!1.78!SMAD6;;chr9:2017365..2017380,+!p9@SMARCA2!0.30!1.45!SMARCA2;;chr6:28109608..28109693,+!p1@ZNF192!0.29!29.10!ZNF192;;chr5:142783175..142783297,-!p1@NR3C1!0.29!24.25!NR3C1;;chr1:67390665..67390698,+!p1@MIER1!0.29!24.09!MIER1;;chr9:99540335..99540388,-!p1@ZNF510!0.29!12.29!ZNF510;;chr17:40440481..40440550,+!p1@STAT5A!0.29!11.96!STAT5A;;chr19:6110474..6110551,-!p1@RFX2!0.29!10.18!RFX2;;chr19:35264089..35264146,-!p1@ZNF599!0.29!8.41!ZNF599;;chr2:178129358..178129403,-!p5@NFE2L2!0.29!6.47!NFE2L2;;chr7:99156145..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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg38.nobarcode.ctss.bed.gz
|id=FF:11558-120D1
|is_a=EFO:0002091;;FF:0000251
|is_obsolete=
|library_id=CNhs11911
|library_id_phase_based=2:CNhs11911
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11558
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11558
|name=Fibroblast - skin spinal muscular atrophy, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11911,LSID842,release014,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
|rna_catalog_number=custom
|rna_concentration=1.144
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=2.11
|rna_od260/280=2.11
|rna_position=D1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=120D1
|rna_weight_ug=148.7395
|sample_age=2 year old child
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=GM09677
|sample_cell_type=fibroblast
|sample_collaboration=Splicing (contact: Al Forrest)
|sample_company=Coriell
|sample_description=
|sample_dev_stage=
|sample_disease=SPINAL MUSCULAR ATROPHY I; SMA1
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.19633315879583e-218!GO:0005737;cytoplasm;2.29115721973013e-173!GO:0043226;organelle;2.64360790170936e-170!GO:0043229;intracellular organelle;7.73591642401888e-170!GO:0043231;intracellular membrane-bound organelle;5.16579543416724e-168!GO:0043227;membrane-bound organelle;9.62404874084711e-168!GO:0044444;cytoplasmic part;2.75808171204145e-125!GO:0044422;organelle part;7.27301059434069e-112!GO:0044446;intracellular organelle part;1.75067637199811e-110!GO:0032991;macromolecular complex;1.96030097931515e-80!GO:0044238;primary metabolic process;7.52881592445784e-80!GO:0044237;cellular metabolic process;9.68408785547168e-79!GO:0043170;macromolecule metabolic process;2.77284781521319e-76!GO:0030529;ribonucleoprotein complex;2.06698300368779e-74!GO:0005515;protein binding;1.11172376983083e-71!GO:0005634;nucleus;1.58262822566985e-63!GO:0003723;RNA binding;1.33557438977368e-62!GO:0043233;organelle lumen;2.29652246577504e-61!GO:0031974;membrane-enclosed lumen;2.29652246577504e-61!GO:0044428;nuclear part;2.32831407995597e-57!GO:0005739;mitochondrion;1.00846923302956e-53!GO:0019538;protein metabolic process;2.22516027679972e-47!GO:0016043;cellular component organization and biogenesis;1.24792468022417e-45!GO:0006412;translation;2.05124915636131e-45!GO:0005840;ribosome;3.64769391894263e-45!GO:0015031;protein transport;2.08655141718392e-43!GO:0033036;macromolecule localization;3.05775668257258e-43!GO:0031090;organelle membrane;4.4242543752118e-43!GO:0044260;cellular macromolecule metabolic process;5.24016852714622e-42!GO:0010467;gene expression;3.75178415663564e-41!GO:0044267;cellular protein metabolic process;8.74121472651823e-41!GO:0045184;establishment of protein localization;1.38495898154673e-40!GO:0003735;structural constituent of ribosome;1.81246745220072e-40!GO:0006396;RNA processing;2.91747510922145e-40!GO:0008104;protein localization;5.27596255828241e-40!GO:0043234;protein complex;1.94855626569067e-39!GO:0043283;biopolymer metabolic process;2.44463729124224e-39!GO:0031981;nuclear lumen;2.27592958085176e-37!GO:0005829;cytosol;2.57504690710167e-37!GO:0033279;ribosomal subunit;6.28362094418178e-36!GO:0044429;mitochondrial part;1.5296040503512e-35!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.24790547791946e-35!GO:0016071;mRNA metabolic process;1.59978273107695e-34!GO:0009059;macromolecule biosynthetic process;2.37601046168996e-34!GO:0009058;biosynthetic process;5.16107170754788e-33!GO:0008380;RNA splicing;1.82289804303032e-32!GO:0044249;cellular biosynthetic process;1.82289804303032e-32!GO:0046907;intracellular transport;4.17043872833086e-31!GO:0031967;organelle envelope;2.62926632812592e-30!GO:0006397;mRNA processing;4.43007891826982e-30!GO:0031975;envelope;4.49936581900474e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.49190275599052e-28!GO:0065003;macromolecular complex assembly;2.48717006968711e-28!GO:0006886;intracellular protein transport;7.80899513145558e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.70116248467517e-26!GO:0022607;cellular component assembly;5.07831058138852e-26!GO:0006996;organelle organization and biogenesis;1.24812123699642e-24!GO:0005654;nucleoplasm;2.18667562119125e-24!GO:0003676;nucleic acid binding;2.61448468803657e-23!GO:0005740;mitochondrial envelope;2.79484665622693e-23!GO:0043228;non-membrane-bound organelle;2.97511729226437e-22!GO:0043232;intracellular non-membrane-bound organelle;2.97511729226437e-22!GO:0031966;mitochondrial membrane;4.34922488395011e-22!GO:0005681;spliceosome;4.43232434964655e-22!GO:0044445;cytosolic part;8.71699118180387e-22!GO:0019866;organelle inner membrane;2.34753393505982e-21!GO:0044451;nucleoplasm part;2.72386534051836e-20!GO:0005743;mitochondrial inner membrane;2.93151356415043e-20!GO:0005783;endoplasmic reticulum;3.30904696456632e-19!GO:0006457;protein folding;4.28022782884301e-19!GO:0022618;protein-RNA complex assembly;4.29516543784744e-19!GO:0006119;oxidative phosphorylation;4.88760001868804e-19!GO:0051649;establishment of cellular localization;5.64802053229797e-19!GO:0051641;cellular localization;6.91766859367849e-19!GO:0016070;RNA metabolic process;1.17986863710108e-18!GO:0008134;transcription factor binding;1.45473323247297e-18!GO:0015935;small ribosomal subunit;1.5739744247619e-18!GO:0015934;large ribosomal subunit;2.63872960434628e-18!GO:0006259;DNA metabolic process;2.63872960434628e-18!GO:0016462;pyrophosphatase activity;3.24243147947987e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.37813889251129e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.78182920194753e-17!GO:0000166;nucleotide binding;5.38359421406694e-17!GO:0012505;endomembrane system;8.16104008724849e-17!GO:0017111;nucleoside-triphosphatase activity;1.00166405964226e-16!GO:0005794;Golgi apparatus;1.62877575673534e-16!GO:0044455;mitochondrial membrane part;1.83790836542202e-16!GO:0006512;ubiquitin cycle;2.70368227620307e-16!GO:0008135;translation factor activity, nucleic acid binding;2.75770291892992e-16!GO:0048770;pigment granule;6.65447927918746e-16!GO:0042470;melanosome;6.65447927918746e-16!GO:0048193;Golgi vesicle transport;1.91835211645618e-15!GO:0016874;ligase activity;3.60425894065337e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;4.62165594728768e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.90866398604188e-15!GO:0000502;proteasome complex (sensu Eukaryota);7.22979919653581e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.01117804344613e-14!GO:0019941;modification-dependent protein catabolic process;1.01117804344613e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.01117804344613e-14!GO:0044432;endoplasmic reticulum part;1.01117804344613e-14!GO:0044257;cellular protein catabolic process;1.37446881049349e-14!GO:0031980;mitochondrial lumen;1.43988767811954e-14!GO:0005759;mitochondrial matrix;1.43988767811954e-14!GO:0016192;vesicle-mediated transport;1.99815487098736e-14!GO:0043285;biopolymer catabolic process;2.97652521980857e-14!GO:0044265;cellular macromolecule catabolic process;3.35424425894126e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.58285233734401e-14!GO:0005730;nucleolus;9.85432645379709e-14!GO:0005746;mitochondrial respiratory chain;1.05469248244121e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.91954751400619e-13!GO:0006413;translational initiation;4.51198326601482e-13!GO:0003743;translation initiation factor activity;5.15103992971717e-13!GO:0006605;protein targeting;8.72754974376423e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.08780332906188e-12!GO:0003954;NADH dehydrogenase activity;2.08780332906188e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.08780332906188e-12!GO:0030163;protein catabolic process;2.13837041687882e-12!GO:0051186;cofactor metabolic process;2.17927283627386e-12!GO:0003712;transcription cofactor activity;2.62851665905582e-12!GO:0009057;macromolecule catabolic process;2.97684409165688e-12!GO:0051082;unfolded protein binding;3.08058658737993e-12!GO:0005793;ER-Golgi intermediate compartment;4.24942262078169e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;7.17488057650722e-12!GO:0000375;RNA splicing, via transesterification reactions;7.17488057650722e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.17488057650722e-12!GO:0044248;cellular catabolic process;1.20416465796287e-11!GO:0007049;cell cycle;1.44975017111747e-11!GO:0005761;mitochondrial ribosome;2.36761822032795e-11!GO:0000313;organellar ribosome;2.36761822032795e-11!GO:0017076;purine nucleotide binding;3.22544847635892e-11!GO:0050794;regulation of cellular process;3.22544847635892e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.5121366181282e-11!GO:0032553;ribonucleotide binding;3.71667984897805e-11!GO:0032555;purine ribonucleotide binding;3.71667984897805e-11!GO:0006974;response to DNA damage stimulus;4.57940644311131e-11!GO:0042775;organelle ATP synthesis coupled electron transport;5.80410758169466e-11!GO:0042773;ATP synthesis coupled electron transport;5.80410758169466e-11!GO:0016604;nuclear body;6.56081765941697e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.24485439829786e-11!GO:0045271;respiratory chain complex I;9.24485439829786e-11!GO:0005747;mitochondrial respiratory chain complex I;9.24485439829786e-11!GO:0006446;regulation of translational initiation;9.24485439829786e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.22343131499523e-10!GO:0008565;protein transporter activity;2.33369147422494e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.20232131959918e-10!GO:0043412;biopolymer modification;6.17584220778457e-10!GO:0005789;endoplasmic reticulum membrane;1.12649244315645e-09!GO:0016607;nuclear speck;1.76431329533654e-09!GO:0006732;coenzyme metabolic process;1.89986173285392e-09!GO:0009055;electron carrier activity;2.26140687995588e-09!GO:0006464;protein modification process;5.69053845276066e-09!GO:0008639;small protein conjugating enzyme activity;6.12174944131206e-09!GO:0006888;ER to Golgi vesicle-mediated transport;8.17351345021604e-09!GO:0004842;ubiquitin-protein ligase activity;1.02270469912639e-08!GO:0006366;transcription from RNA polymerase II promoter;1.15197315352108e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.1676421444051e-08!GO:0009259;ribonucleotide metabolic process;1.29720150208068e-08!GO:0019787;small conjugating protein ligase activity;1.58084369984163e-08!GO:0006163;purine nucleotide metabolic process;1.78148492214052e-08!GO:0006913;nucleocytoplasmic transport;1.78148492214052e-08!GO:0006281;DNA repair;1.80552030964959e-08!GO:0048475;coated membrane;1.82688751866876e-08!GO:0030117;membrane coat;1.82688751866876e-08!GO:0042254;ribosome biogenesis and assembly;1.86930840275663e-08!GO:0048523;negative regulation of cellular process;1.88140922887522e-08!GO:0009150;purine ribonucleotide metabolic process;1.96365849016722e-08!GO:0006461;protein complex assembly;1.98251154690125e-08!GO:0004386;helicase activity;2.13217078112604e-08!GO:0005524;ATP binding;2.90312238422137e-08!GO:0050789;regulation of biological process;3.05532280185774e-08!GO:0051169;nuclear transport;3.06421453002086e-08!GO:0005768;endosome;3.1065469546506e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.41768300624298e-08!GO:0016887;ATPase activity;3.50191083615804e-08!GO:0030120;vesicle coat;3.61327778940469e-08!GO:0030662;coated vesicle membrane;3.61327778940469e-08!GO:0008026;ATP-dependent helicase activity;3.63651885211245e-08!GO:0031965;nuclear membrane;3.70634279749124e-08!GO:0032559;adenyl ribonucleotide binding;3.83726124308496e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.8445689283991e-08!GO:0030554;adenyl nucleotide binding;4.04866325773665e-08!GO:0022402;cell cycle process;4.36566147818513e-08!GO:0009060;aerobic respiration;4.47529487899698e-08!GO:0006164;purine nucleotide biosynthetic process;4.53394567618583e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.82247937276497e-08!GO:0045333;cellular respiration;5.39139783281033e-08!GO:0012501;programmed cell death;5.8413736731069e-08!GO:0051246;regulation of protein metabolic process;6.30072294740612e-08!GO:0003924;GTPase activity;6.30072294740612e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.08961066902467e-08!GO:0009260;ribonucleotide biosynthetic process;7.37492857510562e-08!GO:0009719;response to endogenous stimulus;7.41887805651036e-08!GO:0005635;nuclear envelope;7.65978447988453e-08!GO:0043687;post-translational protein modification;9.3630218567335e-08!GO:0006323;DNA packaging;1.04104440565769e-07!GO:0042623;ATPase activity, coupled;1.09885342665555e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.10677794704075e-07!GO:0006915;apoptosis;1.26868196369091e-07!GO:0016491;oxidoreductase activity;1.6372816473285e-07!GO:0015986;ATP synthesis coupled proton transport;1.83428355235812e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.83428355235812e-07!GO:0051276;chromosome organization and biogenesis;1.83933238038199e-07!GO:0044453;nuclear membrane part;1.97531777128838e-07!GO:0016881;acid-amino acid ligase activity;1.97531777128838e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.98166646295221e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.98166646295221e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.21416833340151e-07!GO:0005788;endoplasmic reticulum lumen;2.40678982531774e-07!GO:0008219;cell death;2.8943001534657e-07!GO:0016265;death;2.8943001534657e-07!GO:0003713;transcription coactivator activity;3.40079418782256e-07!GO:0009141;nucleoside triphosphate metabolic process;3.65048316103336e-07!GO:0051187;cofactor catabolic process;4.23294798085239e-07!GO:0006099;tricarboxylic acid cycle;5.50539972665885e-07!GO:0046356;acetyl-CoA catabolic process;5.50539972665885e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.50539972665885e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.88601285703564e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.42080930752932e-07!GO:0004812;aminoacyl-tRNA ligase activity;6.42080930752932e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.42080930752932e-07!GO:0006399;tRNA metabolic process;6.93702163818427e-07!GO:0046034;ATP metabolic process;6.99321487299908e-07!GO:0048519;negative regulation of biological process;7.7480434040259e-07!GO:0043038;amino acid activation;7.94407961343256e-07!GO:0006418;tRNA aminoacylation for protein translation;7.94407961343256e-07!GO:0043039;tRNA aminoacylation;7.94407961343256e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.05194125999769e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.05194125999769e-07!GO:0009109;coenzyme catabolic process;8.49072177048021e-07!GO:0019829;cation-transporting ATPase activity;8.53344352469114e-07!GO:0009056;catabolic process;8.66589481543471e-07!GO:0000074;regulation of progression through cell cycle;9.02361580709685e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.06146775818142e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.06146775818142e-07!GO:0051726;regulation of cell cycle;9.18997179092317e-07!GO:0017038;protein import;1.04265188231839e-06!GO:0044431;Golgi apparatus part;1.17729974858488e-06!GO:0044440;endosomal part;1.34587185840038e-06!GO:0010008;endosome membrane;1.34587185840038e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.37737054748113e-06!GO:0045786;negative regulation of progression through cell cycle;1.60047719082876e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.23001898195977e-06!GO:0006754;ATP biosynthetic process;2.3718349168163e-06!GO:0006753;nucleoside phosphate metabolic process;2.3718349168163e-06!GO:0006084;acetyl-CoA metabolic process;2.72292335080047e-06!GO:0000245;spliceosome assembly;2.97533585099939e-06!GO:0005667;transcription factor complex;3.07101322405718e-06!GO:0005643;nuclear pore;3.68794871656245e-06!GO:0016568;chromatin modification;3.83613316108408e-06!GO:0065002;intracellular protein transport across a membrane;4.05807585640555e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.23038228305726e-06!GO:0043566;structure-specific DNA binding;4.49870263458581e-06!GO:0000278;mitotic cell cycle;4.81823741546699e-06!GO:0019222;regulation of metabolic process;5.49173249383768e-06!GO:0006403;RNA localization;5.67115961115445e-06!GO:0004298;threonine endopeptidase activity;5.71223398493849e-06!GO:0050657;nucleic acid transport;5.71239446330841e-06!GO:0051236;establishment of RNA localization;5.71239446330841e-06!GO:0050658;RNA transport;5.71239446330841e-06!GO:0005525;GTP binding;7.11727156327179e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.23966665552265e-06!GO:0003697;single-stranded DNA binding;7.36504913221374e-06!GO:0006613;cotranslational protein targeting to membrane;7.37810114424567e-06!GO:0045259;proton-transporting ATP synthase complex;7.74226725626127e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.97784692539067e-06!GO:0032446;protein modification by small protein conjugation;8.56628118704037e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.56628118704037e-06!GO:0009117;nucleotide metabolic process;9.62458442910328e-06!GO:0051188;cofactor biosynthetic process;1.04535594420182e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.15169647578988e-05!GO:0031252;leading edge;1.2197758897594e-05!GO:0031988;membrane-bound vesicle;1.23726858200302e-05!GO:0000151;ubiquitin ligase complex;1.25113924368328e-05!GO:0016563;transcription activator activity;1.26460054751891e-05!GO:0005770;late endosome;1.30856223343183e-05!GO:0065004;protein-DNA complex assembly;1.37687851496674e-05!GO:0008361;regulation of cell size;1.38573325245356e-05!GO:0016049;cell growth;1.42626922325035e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.45166609244946e-05!GO:0005798;Golgi-associated vesicle;1.49121340793559e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.51218455160646e-05!GO:0016567;protein ubiquitination;1.52146671707786e-05!GO:0051789;response to protein stimulus;1.56980040672353e-05!GO:0006986;response to unfolded protein;1.56980040672353e-05!GO:0016859;cis-trans isomerase activity;1.59737289286883e-05!GO:0016564;transcription repressor activity;1.72814958957593e-05!GO:0003714;transcription corepressor activity;1.83915682326583e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.13340125958634e-05!GO:0006260;DNA replication;2.21138725871565e-05!GO:0005773;vacuole;2.30330695497269e-05!GO:0031324;negative regulation of cellular metabolic process;2.36968575245838e-05!GO:0016853;isomerase activity;2.55158527705042e-05!GO:0046930;pore complex;2.76696690386916e-05!GO:0006364;rRNA processing;3.10565398837558e-05!GO:0006091;generation of precursor metabolites and energy;3.30740121902945e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.46868114697917e-05!GO:0019843;rRNA binding;3.50385173991537e-05!GO:0003724;RNA helicase activity;3.59409800507095e-05!GO:0031982;vesicle;3.91585931524978e-05!GO:0005694;chromosome;3.91585931524978e-05!GO:0016072;rRNA metabolic process;4.36721386922768e-05!GO:0042981;regulation of apoptosis;4.46607443822211e-05!GO:0043067;regulation of programmed cell death;4.6210336353739e-05!GO:0001558;regulation of cell growth;5.48045047041932e-05!GO:0031410;cytoplasmic vesicle;5.64572321379071e-05!GO:0032561;guanyl ribonucleotide binding;5.64572321379071e-05!GO:0019001;guanyl nucleotide binding;5.64572321379071e-05!GO:0006752;group transfer coenzyme metabolic process;5.76396440586768e-05!GO:0051170;nuclear import;6.30503692401594e-05!GO:0005769;early endosome;6.54328056955427e-05!GO:0016787;hydrolase activity;6.93269371386282e-05!GO:0065007;biological regulation;7.24581482677242e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;7.24581482677242e-05!GO:0000139;Golgi membrane;7.73841084005392e-05!GO:0006916;anti-apoptosis;7.96234103545618e-05!GO:0006612;protein targeting to membrane;7.96234103545618e-05!GO:0006333;chromatin assembly or disassembly;8.07309003085621e-05!GO:0005905;coated pit;8.20110391289018e-05!GO:0005813;centrosome;8.35041984875506e-05!GO:0043069;negative regulation of programmed cell death;8.35434800103756e-05!GO:0051028;mRNA transport;8.69792463475201e-05!GO:0015630;microtubule cytoskeleton;8.76700286908394e-05!GO:0009892;negative regulation of metabolic process;8.86664372699686e-05!GO:0006606;protein import into nucleus;9.39336381689755e-05!GO:0048522;positive regulation of cellular process;0.000112211998778603!GO:0043066;negative regulation of apoptosis;0.000121958427254881!GO:0008654;phospholipid biosynthetic process;0.000122183245043126!GO:0000323;lytic vacuole;0.000136625836442779!GO:0005764;lysosome;0.000136625836442779!GO:0007005;mitochondrion organization and biogenesis;0.000145346402943229!GO:0009108;coenzyme biosynthetic process;0.000145346402943229!GO:0005791;rough endoplasmic reticulum;0.000177531606426429!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000182356252590966!GO:0005762;mitochondrial large ribosomal subunit;0.000186207274182061!GO:0000315;organellar large ribosomal subunit;0.000186207274182061!GO:0043021;ribonucleoprotein binding;0.00018665499911286!GO:0043623;cellular protein complex assembly;0.000187583562102573!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000198233294423866!GO:0005815;microtubule organizing center;0.000213391570554154!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00021515154060357!GO:0030867;rough endoplasmic reticulum membrane;0.000233165508316972!GO:0030133;transport vesicle;0.00024397842281248!GO:0016779;nucleotidyltransferase activity;0.000269181773625712!GO:0030029;actin filament-based process;0.000279447045773617!GO:0045454;cell redox homeostasis;0.000289529956286452!GO:0051427;hormone receptor binding;0.000302516246347409!GO:0044427;chromosomal part;0.000315480164495745!GO:0000785;chromatin;0.00036734998910272!GO:0016481;negative regulation of transcription;0.000388749002644878!GO:0007010;cytoskeleton organization and biogenesis;0.000414494054101603!GO:0030663;COPI coated vesicle membrane;0.000430859804951358!GO:0030126;COPI vesicle coat;0.000430859804951358!GO:0004177;aminopeptidase activity;0.000433469612212799!GO:0007243;protein kinase cascade;0.000434023335745228!GO:0019899;enzyme binding;0.000485324934487193!GO:0033116;ER-Golgi intermediate compartment membrane;0.000487301978288318!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000498786493199641!GO:0016310;phosphorylation;0.000506448930535382!GO:0005048;signal sequence binding;0.00051949691679269!GO:0035257;nuclear hormone receptor binding;0.000575820266580762!GO:0008250;oligosaccharyl transferase complex;0.000576258055680905!GO:0007050;cell cycle arrest;0.000652884954054145!GO:0006891;intra-Golgi vesicle-mediated transport;0.00069681173682248!GO:0005885;Arp2/3 protein complex;0.000705355247272769!GO:0008186;RNA-dependent ATPase activity;0.000716354126227489!GO:0031323;regulation of cellular metabolic process;0.000717157370266502!GO:0016740;transferase activity;0.000805861006598206!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000837134196448478!GO:0006793;phosphorus metabolic process;0.000847553501786537!GO:0006796;phosphate metabolic process;0.000847553501786537!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000851220970059339!GO:0004576;oligosaccharyl transferase activity;0.000868204152207879!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000978331739971667!GO:0016044;membrane organization and biogenesis;0.00101717770319975!GO:0030118;clathrin coat;0.00105238877311197!GO:0030137;COPI-coated vesicle;0.00111486761343735!GO:0051920;peroxiredoxin activity;0.00112117248312606!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00122626958080386!GO:0019867;outer membrane;0.00123146215684071!GO:0031968;organelle outer membrane;0.0013984598508048!GO:0030027;lamellipodium;0.00140082749367029!GO:0008154;actin polymerization and/or depolymerization;0.00140339149553121!GO:0007264;small GTPase mediated signal transduction;0.00142701698227075!GO:0051128;regulation of cellular component organization and biogenesis;0.0014519462503788!GO:0016363;nuclear matrix;0.00146052869357636!GO:0051252;regulation of RNA metabolic process;0.00152009242002925!GO:0048500;signal recognition particle;0.00169190654697897!GO:0046914;transition metal ion binding;0.00169480537205245!GO:0000314;organellar small ribosomal subunit;0.00169801861980333!GO:0005763;mitochondrial small ribosomal subunit;0.00169801861980333!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00175521833180793!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00179340667710691!GO:0006414;translational elongation;0.00179631376292888!GO:0051168;nuclear export;0.00182265962641005!GO:0018196;peptidyl-asparagine modification;0.00185374289392921!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00185374289392921!GO:0006350;transcription;0.00189131214073524!GO:0003729;mRNA binding;0.00193578451172491!GO:0003899;DNA-directed RNA polymerase activity;0.00197005833741756!GO:0004004;ATP-dependent RNA helicase activity;0.00200517771015019!GO:0051329;interphase of mitotic cell cycle;0.00217317597155726!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00226533893902041!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00226533893902041!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00226533893902041!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00227103023755411!GO:0003690;double-stranded DNA binding;0.00228604089606021!GO:0040008;regulation of growth;0.0025210698894114!GO:0022403;cell cycle phase;0.00257640050609243!GO:0051301;cell division;0.00262498826088483!GO:0030658;transport vesicle membrane;0.00264744512945586!GO:0006383;transcription from RNA polymerase III promoter;0.00272547815719961!GO:0005741;mitochondrial outer membrane;0.00274414225418256!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0028321795988752!GO:0009967;positive regulation of signal transduction;0.00284793207581385!GO:0008047;enzyme activator activity;0.00287270068439545!GO:0031901;early endosome membrane;0.00289263154021913!GO:0008092;cytoskeletal protein binding;0.00293087898585901!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00301328160357748!GO:0016197;endosome transport;0.00309076797460718!GO:0003711;transcription elongation regulator activity;0.00309076797460718!GO:0010468;regulation of gene expression;0.00309076797460718!GO:0003746;translation elongation factor activity;0.00311842835517663!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00328678419194848!GO:0045047;protein targeting to ER;0.00328678419194848!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00337478720407461!GO:0005096;GTPase activator activity;0.00364060622774386!GO:0006334;nucleosome assembly;0.00364783348430895!GO:0030132;clathrin coat of coated pit;0.00373379203525742!GO:0046474;glycerophospholipid biosynthetic process;0.00381180873143974!GO:0030521;androgen receptor signaling pathway;0.00382896889237228!GO:0030134;ER to Golgi transport vesicle;0.00390226536058347!GO:0043284;biopolymer biosynthetic process;0.00397670672846938!GO:0008270;zinc ion binding;0.00402796189642177!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0040294472799088!GO:0048518;positive regulation of biological process;0.00405185799006407!GO:0006402;mRNA catabolic process;0.00405185799006407!GO:0048471;perinuclear region of cytoplasm;0.00408837201635367!GO:0009165;nucleotide biosynthetic process;0.00411765846215694!GO:0030127;COPII vesicle coat;0.00438590325253439!GO:0012507;ER to Golgi transport vesicle membrane;0.00438590325253439!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00443525150797071!GO:0051325;interphase;0.00449562814066472!GO:0000087;M phase of mitotic cell cycle;0.00454883327867902!GO:0003684;damaged DNA binding;0.00462436518808797!GO:0008312;7S RNA binding;0.00469485331053164!GO:0031072;heat shock protein binding;0.00513433458413417!GO:0006289;nucleotide-excision repair;0.00551056473964831!GO:0007067;mitosis;0.00554817079920412!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00582400601480809!GO:0030119;AP-type membrane coat adaptor complex;0.00589239484433919!GO:0006354;RNA elongation;0.0060733214833979!GO:0043681;protein import into mitochondrion;0.00615552230844666!GO:0030659;cytoplasmic vesicle membrane;0.00633531500844786!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00641320253743556!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00641320253743556!GO:0031497;chromatin assembly;0.00641440885293114!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0066078303448581!GO:0030041;actin filament polymerization;0.00665557444746302!GO:0045045;secretory pathway;0.00685809993272171!GO:0035258;steroid hormone receptor binding;0.00710445160973128!GO:0017166;vinculin binding;0.00710445160973128!GO:0050681;androgen receptor binding;0.00749875366431522!GO:0030660;Golgi-associated vesicle membrane;0.00763085849819306!GO:0043488;regulation of mRNA stability;0.00775693753819937!GO:0043487;regulation of RNA stability;0.00775693753819937!GO:0044262;cellular carbohydrate metabolic process;0.00778739969892404!GO:0008180;signalosome;0.00788029614330601!GO:0045892;negative regulation of transcription, DNA-dependent;0.0079708725810867!GO:0000059;protein import into nucleus, docking;0.00838730293900163!GO:0006509;membrane protein ectodomain proteolysis;0.0085902042132068!GO:0033619;membrane protein proteolysis;0.0085902042132068!GO:0045893;positive regulation of transcription, DNA-dependent;0.00875571373296091!GO:0046489;phosphoinositide biosynthetic process;0.00878911010595654!GO:0005869;dynactin complex;0.00912533316224605!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00953561811333206!GO:0051087;chaperone binding;0.00954899852286549!GO:0008234;cysteine-type peptidase activity;0.00957248915511475!GO:0006892;post-Golgi vesicle-mediated transport;0.0100612278740866!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0100911396383384!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0100911396383384!GO:0001527;microfibril;0.0101569635749754!GO:0045941;positive regulation of transcription;0.0103119097423813!GO:0042802;identical protein binding;0.0104417498565672!GO:0006352;transcription initiation;0.0104798202055349!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0105867061296121!GO:0051287;NAD binding;0.0107669735287537!GO:0030131;clathrin adaptor complex;0.0114202644536248!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0116264728484524!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0120134660955086!GO:0046467;membrane lipid biosynthetic process;0.0120372521403164!GO:0000209;protein polyubiquitination;0.012098847087265!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0123593509299707!GO:0033043;regulation of organelle organization and biogenesis;0.0123593509299707!GO:0005100;Rho GTPase activator activity;0.0124061666305705!GO:0000339;RNA cap binding;0.0125977137819791!GO:0006740;NADPH regeneration;0.0127002974798617!GO:0006098;pentose-phosphate shunt;0.0127002974798617!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0133154236479514!GO:0015399;primary active transmembrane transporter activity;0.0133154236479514!GO:0043433;negative regulation of transcription factor activity;0.014419306107082!GO:0008139;nuclear localization sequence binding;0.0144542950810533!GO:0000049;tRNA binding;0.0146860515136037!GO:0044433;cytoplasmic vesicle part;0.0146860515136037!GO:0016408;C-acyltransferase activity;0.0152737606794381!GO:0046483;heterocycle metabolic process;0.0153080427227163!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0153219145248578!GO:0001726;ruffle;0.0153624790936898!GO:0006417;regulation of translation;0.0157957077127829!GO:0031543;peptidyl-proline dioxygenase activity;0.0158644915630394!GO:0032984;macromolecular complex disassembly;0.0158690766218082!GO:0019798;procollagen-proline dioxygenase activity;0.0161412968791644!GO:0006979;response to oxidative stress;0.0168417958571387!GO:0050662;coenzyme binding;0.0169988236954204!GO:0048487;beta-tubulin binding;0.01700813925491!GO:0031902;late endosome membrane;0.0170589724951622!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0170589724951622!GO:0015992;proton transport;0.0180332677458504!GO:0030125;clathrin vesicle coat;0.0187732518028224!GO:0030665;clathrin coated vesicle membrane;0.0187732518028224!GO:0032774;RNA biosynthetic process;0.0191807215964271!GO:0030176;integral to endoplasmic reticulum membrane;0.019255101755535!GO:0030880;RNA polymerase complex;0.0193433287707256!GO:0031529;ruffle organization and biogenesis;0.0193433287707256!GO:0006497;protein amino acid lipidation;0.0193639702401169!GO:0030032;lamellipodium biogenesis;0.0195048654973754!GO:0006818;hydrogen transport;0.0196898247961958!GO:0006376;mRNA splice site selection;0.0196898247961958!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0196898247961958!GO:0006401;RNA catabolic process;0.0201588718650094!GO:0031272;regulation of pseudopodium formation;0.0201588718650094!GO:0031269;pseudopodium formation;0.0201588718650094!GO:0031344;regulation of cell projection organization and biogenesis;0.0201588718650094!GO:0031268;pseudopodium organization and biogenesis;0.0201588718650094!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0201588718650094!GO:0031274;positive regulation of pseudopodium formation;0.0201588718650094!GO:0003682;chromatin binding;0.0207787395477202!GO:0003678;DNA helicase activity;0.020967476061792!GO:0006626;protein targeting to mitochondrion;0.0210534500477375!GO:0031124;mRNA 3'-end processing;0.0210534500477375!GO:0006351;transcription, DNA-dependent;0.0210534500477375!GO:0005862;muscle thin filament tropomyosin;0.0210534500477375!GO:0012506;vesicle membrane;0.0212498113919595!GO:0006650;glycerophospholipid metabolic process;0.0214809846828167!GO:0005684;U2-dependent spliceosome;0.0216504730064546!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0216504730064546!GO:0005586;collagen type III;0.0220356281894743!GO:0035035;histone acetyltransferase binding;0.0222903384444133!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0223617318186278!GO:0015002;heme-copper terminal oxidase activity;0.0223617318186278!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0223617318186278!GO:0004129;cytochrome-c oxidase activity;0.0223617318186278!GO:0005801;cis-Golgi network;0.0233845269231984!GO:0005832;chaperonin-containing T-complex;0.0238106897636197!GO:0030100;regulation of endocytosis;0.0239909739541615!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0240374280246613!GO:0050811;GABA receptor binding;0.0240381537971464!GO:0043022;ribosome binding;0.0242191328596615!GO:0022408;negative regulation of cell-cell adhesion;0.0248520706843765!GO:0016251;general RNA polymerase II transcription factor activity;0.0248520706843765!GO:0030833;regulation of actin filament polymerization;0.0248520706843765!GO:0008097;5S rRNA binding;0.0251523959887103!GO:0033673;negative regulation of kinase activity;0.0254659379944178!GO:0006469;negative regulation of protein kinase activity;0.0254659379944178!GO:0022890;inorganic cation transmembrane transporter activity;0.0256112498033749!GO:0016272;prefoldin complex;0.025933398533465!GO:0006897;endocytosis;0.0264797649114454!GO:0010324;membrane invagination;0.0264797649114454!GO:0031625;ubiquitin protein ligase binding;0.0264902098296514!GO:0019752;carboxylic acid metabolic process;0.0266235878352741!GO:0007034;vacuolar transport;0.0268208135425004!GO:0051101;regulation of DNA binding;0.0268730311221169!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0272495672587568!GO:0015631;tubulin binding;0.0275502466051472!GO:0007040;lysosome organization and biogenesis;0.0277358275087987!GO:0043241;protein complex disassembly;0.0278557436418463!GO:0006693;prostaglandin metabolic process;0.0278557436418463!GO:0006692;prostanoid metabolic process;0.0278557436418463!GO:0008610;lipid biosynthetic process;0.0281079830263504!GO:0043624;cellular protein complex disassembly;0.0281704547313779!GO:0000082;G1/S transition of mitotic cell cycle;0.0282828105764648!GO:0006082;organic acid metabolic process;0.0286845765710374!GO:0008022;protein C-terminus binding;0.0290882109297789!GO:0000096;sulfur amino acid metabolic process;0.0291910337176324!GO:0007265;Ras protein signal transduction;0.0293744166428152!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0294918503851259!GO:0006261;DNA-dependent DNA replication;0.0297239866640087!GO:0044452;nucleolar part;0.0301318867897537!GO:0051539;4 iron, 4 sulfur cluster binding;0.0301539338561939!GO:0005520;insulin-like growth factor binding;0.0319426529887781!GO:0051540;metal cluster binding;0.0320295707358645!GO:0051536;iron-sulfur cluster binding;0.0320295707358645!GO:0005669;transcription factor TFIID complex;0.0323871438751467!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0323871438751467!GO:0006635;fatty acid beta-oxidation;0.0329575142872019!GO:0016860;intramolecular oxidoreductase activity;0.0333981708771449!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0341932697462972!GO:0000428;DNA-directed RNA polymerase complex;0.0341932697462972!GO:0007021;tubulin folding;0.0345748465993624!GO:0032940;secretion by cell;0.0346482690477129!GO:0003756;protein disulfide isomerase activity;0.034732297211305!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.034732297211305!GO:0006839;mitochondrial transport;0.034732297211305!GO:0042158;lipoprotein biosynthetic process;0.0351364591625605!GO:0006302;double-strand break repair;0.0357787592102574!GO:0031418;L-ascorbic acid binding;0.0365207373637069!GO:0008238;exopeptidase activity;0.0365697951655046!GO:0051348;negative regulation of transferase activity;0.0365697951655046!GO:0030518;steroid hormone receptor signaling pathway;0.0366932275841483!GO:0007030;Golgi organization and biogenesis;0.0367746570990819!GO:0001953;negative regulation of cell-matrix adhesion;0.0369127382677353!GO:0032535;regulation of cellular component size;0.0370873263391242!GO:0006984;ER-nuclear signaling pathway;0.0389059329993502!GO:0030384;phosphoinositide metabolic process;0.0395582597579365!GO:0009081;branched chain family amino acid metabolic process;0.0395849494633536!GO:0045449;regulation of transcription;0.040163611687066!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0404748304691499!GO:0007033;vacuole organization and biogenesis;0.0411877559007511!GO:0051098;regulation of binding;0.0417419799794654!GO:0008147;structural constituent of bone;0.0419619091872966!GO:0005583;fibrillar collagen;0.0425503272145898!GO:0031123;RNA 3'-end processing;0.0428521497217325!GO:0004003;ATP-dependent DNA helicase activity;0.0429289515790589!GO:0019783;small conjugating protein-specific protease activity;0.0433825837840709!GO:0065009;regulation of a molecular function;0.0434467548955029!GO:0006378;mRNA polyadenylation;0.0436087749617584!GO:0006595;polyamine metabolic process;0.0438328432876065!GO:0006405;RNA export from nucleus;0.0438779120250559!GO:0004674;protein serine/threonine kinase activity;0.0439835038891528!GO:0031371;ubiquitin conjugating enzyme complex;0.0440263803168771!GO:0004287;prolyl oligopeptidase activity;0.0442004854634354!GO:0009303;rRNA transcription;0.044545317686172!GO:0008320;protein transmembrane transporter activity;0.0447011611860035!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0448578998518101!GO:0030832;regulation of actin filament length;0.0452738129160874!GO:0043065;positive regulation of apoptosis;0.0454604131666306!GO:0007006;mitochondrial membrane organization and biogenesis;0.0457029683782843!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0461606971016838!GO:0045792;negative regulation of cell size;0.046174169942478!GO:0031326;regulation of cellular biosynthetic process;0.0464768376411144!GO:0005099;Ras GTPase activator activity;0.0467896136213619!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0469707549358983!GO:0009116;nucleoside metabolic process;0.0470318411927525!GO:0033559;unsaturated fatty acid metabolic process;0.0470318411927525!GO:0006636;unsaturated fatty acid biosynthetic process;0.0470318411927525!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0470318411927525!GO:0006118;electron transport;0.0478080231524881!GO:0030308;negative regulation of cell growth;0.0478973366592289!GO:0022884;macromolecule transmembrane transporter activity;0.0484530989759234!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0484530989759234!GO:0042168;heme metabolic process;0.0485876952520085!GO:0003702;RNA polymerase II transcription factor activity;0.0489776749890158!GO:0006739;NADP metabolic process;0.0490458081045672!GO:0005777;peroxisome;0.04912501961108!GO:0042579;microbody;0.04912501961108!GO:0042585;germinal vesicle;0.04912501961108!GO:0006778;porphyrin metabolic process;0.0494193741133309!GO:0033013;tetrapyrrole metabolic process;0.0494193741133309!GO:0048468;cell development;0.0496380714299058!GO:0004843;ubiquitin-specific protease activity;0.0497250492028402
|sample_id=11558
|sample_note=Originally library704 tailing failed, the remaining sample is being rerun
|sample_sex=M
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|top_motifs=TAL1_TCF{3,4,12}:1.92393032837;ALX4:1.85528640475;ZNF238:1.76703389475;ESR1:1.63370851558;HMX1:1.52160290012;XBP1:1.44950003517;PAX1,9:1.29799003007;MYBL2:1.27969809584;GZF1:1.23713819978;EBF1:1.19098319137;STAT1,3:1.18708348445;KLF4:1.14571928961;ZIC1..3:1.09760464563;FOXO1,3,4:1.00943582603;GLI1..3:0.995863603482;ATF6:0.973695040943;MAZ:0.971892115828;TEAD1:0.963713262667;UFEwm:0.95881747714;TLX1..3_NFIC{dimer}:0.925517611664;HAND1,2:0.925087969013;GTF2I:0.907567938489;NFIX:0.886383191005;TP53:0.874273311702;TFCP2:0.815178106362;PATZ1:0.796841527261;RXR{A,B,G}:0.781691551194;MZF1:0.773639876375;NKX6-1,2:0.772762371888;HIF1A:0.770840529513;NKX2-2,8:0.757671943778;TFAP4:0.754578515652;EVI1:0.728744520967;EN1,2:0.727417967285;ZNF423:0.699132960614;ZNF148:0.68993883378;GCM1,2:0.683856086174;TFAP2{A,C}:0.654942209151;ALX1:0.641710882968;PAX5:0.615776948843;TBX4,5:0.595363800148;RREB1:0.571484382821;EP300:0.548680698162;SPZ1:0.540845594342;NANOG{mouse}:0.539812144269;HES1:0.527019427319;GTF2A1,2:0.518212091523;LHX3,4:0.496224330511;ADNP_IRX_SIX_ZHX:0.489677295279;PRDM1:0.474181051317;SOX5:0.466173395988;IRF1,2:0.462199665694;FOXL1:0.455414730943;HOX{A6,A7,B6,B7}:0.451708006066;ZBTB6:0.440819622515;RXRA_VDR{dimer}:0.435057197856;ELK1,4_GABP{A,B1}:0.427070282419;YY1:0.424460214753;SMAD1..7,9:0.418656756832;HOX{A5,B5}:0.406016820767;NRF1:0.383707861007;NFATC1..3:0.374266422986;MAFB:0.34001597916;HOX{A4,D4}:0.331349282078;TFAP2B:0.312381134712;XCPE1{core}:0.306502013404;NFE2L2:0.28760792857;MYFfamily:0.281333657252;GFI1B:0.272696486338;IKZF1:0.26186067395;PAX6:0.256497423942;SP1:0.255144767723;GFI1:0.237449483751;GATA4:0.231702672591;FOX{I1,J2}:0.224640074476;BPTF:0.221547956083;NKX3-1:0.218426715375;HMGA1,2:0.210604355046;MTF1:0.204449078031;SRF:0.194074936682;ZNF143:0.1643340344;HSF1,2:0.163316272991;ZNF384:0.15795926899;PDX1:0.154225329731;NR1H4:0.139654399662;SOX17:0.122763420568;POU5F1:0.116789804121;TLX2:0.113558045565;NR3C1:0.100570789872;TEF:0.0974641600195;HIC1:0.0851804046117;RFX1:0.0461654353646;AHR_ARNT_ARNT2:0.0407264148661;MED-1{core}:0.0249377822453;TOPORS:0.0129590311209;HLF:0.0129285732268;PAX4:-0.0137816097108;HOXA9_MEIS1:-0.0258605932115;NFE2:-0.0338321292429;NKX3-2:-0.0435121664508;MTE{core}:-0.0436103233988;STAT2,4,6:-0.0675771394269;EGR1..3:-0.0705034274224;FOXD3:-0.0724895803892;NHLH1,2:-0.0827492255194;PRRX1,2:-0.103188787027;REST:-0.105314035243;FOXM1:-0.109657599751;CEBPA,B_DDIT3:-0.116150719419;NFE2L1:-0.1527930611;FOXP3:-0.157060304165;AIRE:-0.159487668055;HNF4A_NR2F1,2:-0.164829541594;RFX2..5_RFXANK_RFXAP:-0.189476255114;PAX8:-0.190970362907;CDC5L:-0.19135739998;BACH2:-0.193997849839;FOXA2:-0.201814344834;CDX1,2,4:-0.203082849627;NKX2-1,4:-0.204170575644;IRF7:-0.204710734446;LEF1_TCF7_TCF7L1,2:-0.207817115762;HNF1A:-0.209422511843;RBPJ:-0.218521028943;ZFP161:-0.219204637705;MEF2{A,B,C,D}:-0.220829956134;ATF2:-0.244108613888;FOS_FOS{B,L1}_JUN{B,D}:-0.250844418753;TBP:-0.260021593551;ELF1,2,4:-0.293808177363;AR:-0.29967018152;HBP1_HMGB_SSRP1_UBTF:-0.30207486053;DBP:-0.309175867024;E2F1..5:-0.317393463243;FOSL2:-0.323870739433;NR6A1:-0.365286663723;FOX{D1,D2}:-0.369354365191;ESRRA:-0.371654840087;RUNX1..3:-0.393124534979;POU3F1..4:-0.407858923103;TGIF1:-0.410679506226;PBX1:-0.411324980122;NFIL3:-0.411677436608;BREu{core}:-0.414737848349;CUX2:-0.428354067589;FOXP1:-0.448132440423;NANOG:-0.49508466071;NKX2-3_NKX2-5:-0.503506471847;T:-0.505004914572;NFKB1_REL_RELA:-0.50508849001;SREBF1,2:-0.515311450936;SPI1:-0.526451562463;ATF5_CREB3:-0.534926969019;FOX{F1,F2,J1}:-0.56066619399;CREB1:-0.566493857674;ONECUT1,2:-0.571040300687;MYB:-0.583372424716;DMAP1_NCOR{1,2}_SMARC:-0.622709715255;bHLH_family:-0.630487009917;FOXN1:-0.630788889748;STAT5{A,B}:-0.641727474689;ETS1,2:-0.645315343929;TFDP1:-0.664576234566;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.673835899369;ARID5B:-0.679748321628;SOX2:-0.682369369503;SPIB:-0.741476153979;ZEB1:-0.749854213858;ATF4:-0.761140602203;JUN:-0.808488508611;PITX1..3:-0.813484359392;POU1F1:-0.835691210336;POU6F1:-0.851162313396;NR5A1,2:-0.863827597735;PAX3,7:-0.873039310261;SNAI1..3:-0.875274492911;NFY{A,B,C}:-0.875348767867;SOX{8,9,10}:-0.889190996121;GATA6:-0.892077880446;PAX2:-0.910838594545;CRX:-0.928781911884;VSX1,2:-0.995427427505;RORA:-1.0142877098;OCT4_SOX2{dimer}:-1.05015335095;FOXQ1:-1.07246854566;ZBTB16:-1.08392575957;LMO2:-1.14569929021;MYOD1:-1.16060670588;PPARG:-1.18261887753;POU2F1..3:-1.32587438498;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.34605628399;IKZF2:-1.43269652593
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11558-120D1;search_select_hide=table117:FF:11558-120D1
}}
}}

Latest revision as of 18:09, 4 June 2020

Name:Fibroblast - skin spinal muscular atrophy, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11911
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age2 year old child
cell typefibroblast
cell lineNA
companyCoriell
collaborationSplicing (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005679
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11911 CAGE DRX008290 DRR009162
Accession ID Hg19

Library idBAMCTSS
CNhs11911 DRZ000587 DRZ001972
Accession ID Hg38

Library idBAMCTSS
CNhs11911 DRZ011937 DRZ013322
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0465
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.125
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.468
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0651
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0193
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0985
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.172
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.659
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.187
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.222
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.414
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.748
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.443
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.294
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.691
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.336
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.103
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0651
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.592
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.39
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.273
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0839
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.631
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.514
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11911

Jaspar motifP-value
MA0002.20.0144
MA0003.10.386
MA0004.10.00497
MA0006.10.34
MA0007.10.39
MA0009.10.25
MA0014.10.535
MA0017.10.0947
MA0018.29.83891e-6
MA0019.10.539
MA0024.10.0842
MA0025.11.5017e-4
MA0027.10.641
MA0028.10.431
MA0029.10.511
MA0030.10.592
MA0031.10.866
MA0035.20.0518
MA0038.10.0644
MA0039.20.15
MA0040.10.35
MA0041.10.16
MA0042.10.082
MA0043.18.17319e-4
MA0046.10.41
MA0047.20.824
MA0048.10.183
MA0050.10.89
MA0051.10.0146
MA0052.10.0233
MA0055.10.46
MA0057.10.619
MA0058.16.95672e-4
MA0059.10.00818
MA0060.17.02431e-8
MA0061.10.0023
MA0062.20.0274
MA0065.20.0352
MA0066.10.654
MA0067.12.04541e-4
MA0068.10.616
MA0069.10.0963
MA0070.10.975
MA0071.10.367
MA0072.10.539
MA0073.10.598
MA0074.10.761
MA0076.10.365
MA0077.10.442
MA0078.10.412
MA0079.20.683
MA0080.21.28202e-10
MA0081.10.087
MA0083.10.911
MA0084.10.142
MA0087.10.315
MA0088.10.451
MA0090.10.00537
MA0091.10.0555
MA0092.10.372
MA0093.10.00732
MA0099.23.77207e-6
MA0100.10.132
MA0101.17.18559e-5
MA0102.20.862
MA0103.12.81195e-4
MA0104.20.00143
MA0105.10.11
MA0106.10.287
MA0107.14.42757e-4
MA0108.20.233
MA0111.10.358
MA0112.20.752
MA0113.10.731
MA0114.10.0399
MA0115.10.0139
MA0116.10.384
MA0117.10.114
MA0119.10.727
MA0122.10.923
MA0124.10.935
MA0125.10.915
MA0131.10.647
MA0135.10.598
MA0136.15.64425e-9
MA0137.20.097
MA0138.20.692
MA0139.10.591
MA0140.10.0497
MA0141.10.169
MA0142.10.301
MA0143.10.471
MA0144.10.43
MA0145.10.662
MA0146.10.581
MA0147.10.00205
MA0148.10.407
MA0149.10.332
MA0150.10.00266
MA0152.10.00557
MA0153.10.109
MA0154.10.832
MA0155.10.857
MA0156.14.24571e-5
MA0157.10.921
MA0159.10.351
MA0160.10.037
MA0162.10.0971
MA0163.10.116
MA0164.10.757
MA0258.10.167
MA0259.10.0477



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11911

Novel motifP-value
10.096
100.331
1000.766
1010.432
1020.0951
1030.817
1040.996
1050.384
1060.00914
1070.215
1080.64
1090.225
110.408
1100.674
1110.0427
1120.846
1130.258
1140.99
1150.344
1160.41
1170.906
1180.859
1190.0301
120.275
1200.961
1210.475
1220.0824
1236.58233e-4
1240.439
1250.456
1260.365
1270.424
1280.223
1290.396
130.38
1300.489
1310.794
1320.135
1330.245
1340.245
1350.539
1360.4
1370.0233
1380.304
1390.0514
140.38
1400.837
1410.101
1420.526
1430.0571
1440.175
1450.376
1460.77
1470.304
1480.0371
1490.201
150.129
1500.905
1510.563
1520.779
1530.126
1540.235
1550.0729
1560.711
1570.328
1580.00337
1590.908
160.363
1600.959
1610.874
1620.868
1630.916
1640.148
1650.322
1660.0347
1670.454
1680.441
1690.231
170.595
180.93
190.0271
20.395
200.595
210.697
220.26
230.819
240.354
250.223
260.694
270.756
280.619
290.696
30.797
300.0848
310.816
321.1402e-10
330.374
340.688
350.426
360.0255
370.514
380.441
390.584
40.113
400.041
410.0194
420.6
430.391
440.969
450.692
460.601
470.255
480.444
490.179
50.578
500.607
510.983
520.478
530.447
540.8
550.204
560.732
570.382
580.118
590.727
60.795
600.121
610.424
620.239
630.752
640.457
650.669
660.102
670.3
680.981
690.709
70.107
700.8
710.198
720.686
730.767
740.792
750.879
760.538
770.46
780.0903
794.61789e-4
80.637
800.596
810.25
820.875
830.0749
840.214
850.714
860.694
870.789
880.284
890.245
90.734
900.294
910.476
920.784
930.583
940.98
950.0939
960.365
970.592
980.432
990.0435



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11911


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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