FF:11711-123C1: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005586 | ||
| | |accession_numbers=CAGE;DRX008816;DRR009688;DRZ001113;DRZ002498;DRZ012463;DRZ013848 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0002494,CL:0000737,CL:0000746 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000103,FF:0000001,FF:0000106 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.57!368.65!Tbx20;;chr10:22539932..22539956,-!p1@Tcf21!1.70!127.60!Tcf21;;chr19:5447886..5447905,+!p1@Fosl1!1.51!31.64!Fosl1;;chr7:19895354..19895369,-!p1@Fosb!1.46!37.82!Fosb;;chr14:63864056..63864102,-!p1@Gata4!1.35!36.27!Gata4;;chr7:52071956..52071978,-!p1@Atf5!1.29!579.61!Atf5;;chr2:167363692..167363710,+!p1@Snai1!1.28!211.98!Snai1;;chr10:119913278..119913298,-!p2@Hmga2!1.27!38.85!Hmga2;;chr8:59799772..59799789,+!p1@Hand2!1.26!48.36!Hand2;;chr9:96653072..96653154,-!p1@Zbtb38!1.26!45.79!Zbtb38;;chr12:86814833..86814846,+!p1@Fos!1.24!374.83!Fos;;chr2:152758901..152758925,-!p1@Foxs1!1.20!65.60!Foxs1;;chr16:15887371..15887385,+!p1@Cebpd!1.18!473.61!Cebpd;;chr10:67000609..67000625,+!p1@Egr2!1.18!32.41!Egr2;;chr7:119822957..119822980,+!p2@Tead1!1.15!63.54!Tead1;;chr1:165243792..165243808,-!p1@Prrx1!1.13!43.48!Prrx1;;chr9:87626083..87626108,-!p1@Tbx18!1.11!25.98!Tbx18;;chr19:5447692..5447711,+!p2@Fosl1!1.07!10.80!Fosl1;;chr9:48644037..48644067,-!p2@Zbtb16!1.05!25.73!Zbtb16;;chr8:123640063..123640077,+!p1@Foxc2!1.03!18.01!Foxc2;;chr10:88996295..88996335,-!p3@Nr1h4!1.02!11.32!Nr1h4;;chr7:19895384..19895399,-!p2@Fosb!1.01!13.12!Fosb;;chr11:74981654..74981658,-!p1@Hic1!1.00!36.27!Hic1;;chrX:48499591..48499593,-!p3@Mbnl3!1.00!9.00!Mbnl3;;chr18:75979866..75979890,+!p3@Zbtb7c!0.98!18.27!Zbtb7c;;chr8:87502608..87502623,-!p1@Junb!0.95!134.55!Junb;;chr12:34642510..34642530,+!p1@Twist1!0.95!25.98!Twist1;;chr12:86940338..86940357,+!p1@Jdp2!0.94!77.95!Jdp2;;chr18:11052485..11052508,+!p2@Gata6!0.94!22.38!Gata6;;chr15:79178029..79178044,+!p4@Maff!0.94!9.52!Maff;;chr6:72185232..72185272,-!p1@Atoh8!0.92!21.61!Atoh8;;chr6:72185210..72185228,-!p3@Atoh8!0.91!12.35!Atoh8;;chr18:35020854..35020869,+!p1@Egr1!0.90!278.87!Egr1;;chr4:135699731..135699747,+!p1@Id3!0.89!790.30!Id3;;chr16:55822241..55822258,-!p1@Nfkbiz!0.89!218.41!Nfkbiz;;chr16:43363190..43363242,+!p2@Zbtb20!0.88!21.10!Zbtb20;;chr10:88996336..88996380,-!p2@Nr1h4!0.87!7.98!Nr1h4;;chr12:34642682..34642753,+!p2@Twist1!0.85!16.98!Twist1;;chr15:79178013..79178028,+!p3@Maff!0.85!8.23!Maff;;chr8:123640090..123640101,+!p2@Foxc2!0.85!6.95!Foxc2;;chr2:91864300..91864379,-!p2@Creb3l1!0.84!17.75!Creb3l1;;chr18:11052606..11052633,+!p4@Gata6!0.84!15.69!Gata6;;chr15:79177964..79177986,+!p1@Maff!0.83!20.84!Maff;;chr16:43363152..43363186,+!p3@Zbtb20!0.82!13.63!Zbtb20;;chr18:11052642..11052659,+!p1@Gata6!0.81!29.58!Gata6;;chr2:152758938..152758954,-!p2@Foxs1!0.81!7.72!Foxs1;;chr9:63869751..63869767,-!p1@Smad6!0.80!14.92!Smad6;;chr10:119913546..119913583,-!p3@Hmga2!0.80!11.83!Hmga2;;chr4:43575544..43575565,+!p2@Creb3!0.79!32.67!Creb3;;chr11:101645830..101645881,-!p2@Etv4!0.79!10.03!Etv4;;chr13:5860776..5860796,+!p1@Klf6!0.76!128.37!Klf6;;chrX:7339938..7339963,+!p1@Tfe3!0.76!26.24!Tfe3;;chr18:75979828..75979864,+!p2@Zbtb7c!0.76!11.58!Zbtb7c;;chr3:32264530..32264544,-!p2@Zmat3!0.76!7.72!Zmat3;;chr1:165243272..165243283,-!p6@Prrx1!0.76!5.92!Prrx1;;chr10:119913310..119913366,-!p1@Hmga2!0.75!39.62!Hmga2;;chr18:11052456..11052477,+!p3@Gata6!0.75!15.69!Gata6;;chr4:149611832..149611846,+!p3@LOC100045967,p3@LOC100503183,p4@Eno1,p4@Gm5506!0.75!4.63!Eno1;;chr9:63869850..63869873,-!p2@Smad6!0.74!14.41!Smad6;;chr1:52176406..52176433,+!p2@Stat1!0.74!12.09!Stat1;;chr7:144506077..144506128,-!p1@Ebf3!0.74!11.06!Ebf3;;chr5:53981592..53981616,+!p3@Rbpj!0.74!9.00!Rbpj;;chrX:7341077..7341091,+!p5@Tfe3!0.74!7.98!Tfe3;;chr9:106356211..106356242,+!p1@Pcbp4!0.73!95.44!Pcbp4;;chr10:67375368..67375433,-!p1@Zfp365!0.73!8.23!Zfp365;;chr11:112643496..112643562,+!p1@Sox9!0.72!179.31!Sox9;;chr9:63605740..63605771,-!p1@Smad3!0.72!69.20!Smad3;;chr13:5860872..5860883,+!p3@Klf6!0.72!9.00!Klf6;;chr15:79178060..79178074,+!p2@Maff!0.71!5.66!Maff;;chr10:119913266..119913277,-!p6@Hmga2!0.71!4.12!Hmga2;;chr2:167514456..167514473,+!p1@Cebpb!0.70!200.66!Cebpb;;chr2:91864661..91864686,-!p1@Creb3l1!0.70!99.30!Creb3l1;;chr3:32264565..32264613,-!p1@Zmat3!0.69!49.39!Zmat3;;chr19:46380235..46380277,+!p3@Nfkb2!0.69!9.26!Nfkb2;;chr6:16848443..16848459,-!p3@Tfec!0.69!3.86!Tfec;;chr10:88996274..88996286,-!p4@Nr1h4!0.69!3.86!Nr1h4;;chr11:96690797..96690813,-!p1@Nfe2l1!0.68!83.61!Nfe2l1;;chr8:87643578..87643593,-!p1@Zfp791!0.68!8.49!Zfp791;;chr1:93698030..93698064,+!p1@Twist2!0.68!8.23!Twist2;;chr1:165243591..165243625,-!p2@Prrx1!0.68!6.17!Prrx1;;chr18:75527009..75527027,+!p1@Smad7!0.67!90.04!Smad7;;chr10:107769168..107769215,+!p1@Pawr!0.67!43.22!Pawr;;chr19:23215673..23215753,+!p1@Klf9!0.66!59.68!Klf9;;chr14:17407970..17408015,-!p2@Rarb!0.66!10.80!Rarb;;chr1:165243379..165243402,-!p3@Prrx1!0.66!5.66!Prrx1;;chr11:96684043..96684069,-!p9@Nfe2l1!0.66!3.60!Nfe2l1;;chr9:119893782..119893802,-!p1@Csrnp1!0.66!3.60!Csrnp1;;chr11:72990738..72990763,+!p2@LOC100047518,p2@Tax1bp3!0.65!22.12!Tax1bp3;;chr6:128250380..128250442,-!p2@Tead4!0.65!4.63!Tead4;;chr6:72185553..72185612,-!p2@Atoh8!0.64!7.20!Atoh8;;chr6:133985993..133986029,+!p2@Etv6!0.63!24.95!Etv6;;chr1:52176378..52176401,+!p3@Stat1!0.63!11.06!Stat1;;chr6:108610766..108610781,+!p2@Bhlhe40!0.63!6.43!Bhlhe40;;chr3:135354384..135354443,-!p1@Nfkb1!0.62!22.64!Nfkb1;;chr9:63869802..63869815,-!p3@Smad6!0.62!6.95!Smad6;;chr9:32503590..32503680,+!p1@Ets1!0.61!135.32!Ets1;;chr9:71743854..71743909,-!p1@Tcf12!0.61!29.33!Tcf12;;chr5:104121391..104121450,+!p3@Aff1!0.61!19.04!Aff1;;chr19:23215509..23215523,+!p4@Klf9!0.61!4.12!Klf9;;chr10:126727842..126727859,+!p1@Ddit3!0.60!103.93!Ddit3;;chr19:5637528..5637548,+!p2@Rela!0.60!21.10!Rela;;chr15:102087880..102087927,-!p2@Rarg!0.60!7.72!Rarg;;chr11:101646566..101646603,-!p1@Etv4!0.59!11.06!Etv4;;chr14:17407878..17407926,-!p1@Rarb!0.58!7.20!Rarb;;chr5:65203599..65203617,+!p8@Klf3!0.58!5.15!Klf3;;chr9:87625971..87625992,-!p2@Tbx18!0.58!2.83!Tbx18;;chr11:44431687..44431706,+!p2@Ebf1!0.57!15.44!Ebf1;;chr10:107769750..107769799,+!p2@Pawr!0.57!6.69!Pawr;;chr14:52935788..52935817,-!p2@Sall2!0.56!6.69!Sall2;;chr6:144730427..144730508,-!p1@Sox5!0.55!19.55!Sox5;;chr5:34530293..34530318,-!p2@Mxd4!0.55!17.75!Mxd4;;chr9:48644306..48644364,-!p1@Zbtb16!0.55!12.61!Zbtb16;;chr1:138521574..138521597,+!p3@Zfp281!0.55!7.20!Zfp281;;chr4:149611803..149611814,+!p6@LOC100045967,p6@LOC100503183,p7@Eno1,p8@Gm5506!0.55!2.57!Eno1;;chr10:80889867..80889924,-!p1@Nfic!0.54!89.01!Nfic;;chr15:101097270..101097290,+!p1@Nr4a1!0.54!32.16!Nr4a1;;chr5:24107779..24107825,-!p1@Smarcd3!0.54!20.58!Smarcd3;;chr5:125538737..125538781,-!p2@Ncor2!0.54!10.80!Ncor2;;chrX:7339915..7339935,+!p4@Tfe3!0.54!6.43!Tfe3;;chr16:43363968..43364001,+!p7@Zbtb20!0.54!5.15!Zbtb20;;chr7:119822940..119822945,+!p6@Tead1!0.54!3.34!Tead1;;chr10:67375223..67375240,-!p4@Zfp365!0.54!2.83!Zfp365;;chr11:5761889..5761969,+!p1@Aebp1!0.53!127.86!Aebp1;;chr7:119822841..119822887,+!p1@Tead1!0.53!98.53!Tead1;;chr18:75527030..75527055,+!p2@Smad7!0.53!19.04!Smad7;;chr2:181194069..181194144,-!p1@Zbtb46!0.53!16.98!Zbtb46;;chr12:56593574..56593592,-!p1@Nfkbia!0.52!153.84!Nfkbia;;chr15:40486566..40486600,+!p1@Zfpm2!0.52!17.24!Zfpm2;;chr9:106356243..106356264,+!p2@Pcbp4!0.52!12.61!Pcbp4;;chr18:75528166..75528170,+!p3@Smad7!0.52!6.95!Smad7;;chr6:72185179..72185196,-!p4@Atoh8!0.52!3.34!Atoh8;;chr5:32438831..32438878,+!p1@Fosl2!0.51!30.10!Fosl2;;chr15:81977802..81977828,+!p2@Srebf2!0.51!24.95!Srebf2;;chr19:46379199..46379301,+!p1@Nfkb2!0.51!16.46!Nfkb2;;chr9:63869834..63869849,-!p5@Smad6!0.51!4.37!Smad6;;chr7:119822915..119822936,+!p5@Tead1!0.51!4.12!Tead1;;chr17:37139472..37139514,+!p1@Zfp57!0.50!19.04!Zfp57;;chr7:20214704..20214800,-!p1@Relb!0.50!8.75!Relb;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!0.50!6.43!Hmga1;;chr3:135354903..135354945,-!p7@Nfkb1!0.50!5.92!Nfkb1;;chr19:5423800..5423821,-!p5@Drap1!0.50!3.60!Drap1;;chr6:133986042..133986052,+!p7@Etv6!0.50!3.09!Etv6;;chr7:52253119..52253130,+!p4@Irf3!0.50!2.57!Irf3;;chr11:96690779..96690790,-!p3@Nfe2l1!0.49!6.17!Nfe2l1;;chr14:67853425..67853454,+!p1@Ebf2!0.49!3.34!Ebf2;;chr11:101645774..101645795,-!p9@Etv4!0.49!2.06!Etv4;;chr9:63869918..63869936,-!p9@Smad6!0.49!2.06!Smad6;;chr17:87153240..87153254,+!p1@Epas1!0.48!53.00!Epas1;;chr16:43619101..43619151,+!p6@Zbtb20!0.48!5.92!Zbtb20;;chr5:32438894..32438908,+!p2@Fosl2!0.48!5.15!Fosl2;;chr6:37392095..37392154,-!p1@Creb3l2!0.47!85.41!Creb3l2;;chr17:87153028..87153049,+!p2@Epas1!0.47!55.57!Epas1;;chr1:92895299..92895373,+!p2@Lrrfip1!0.47!55.05!Lrrfip1;;chr10:119913792..119913820,-!p5@Hmga2!0.47!3.86!Hmga2;;chr19:5424878..5424890,-!p7@Drap1!0.47!3.60!Drap1;;chr10:127080230..127080241,+!p6@Stat6!0.47!2.32!Stat6;;chr15:80085920..80085941,+!p1@Atf4!0.46!302.28!Atf4;;chr19:46380172..46380231,+!p2@Nfkb2!0.46!17.49!Nfkb2;;chr19:23215469..23215494,+!p2@Klf9!0.46!3.34!Klf9;;chr10:119914001..119914078,-!p4@Hmga2!0.46!2.83!Hmga2;;chr11:100800671..100800770,-!p1@Stat3!0.45!82.84!Stat3;;chr3:30993974..30994045,+!p1@Skil!0.45!72.03!Skil;;chr16:4594740..4594759,+!p1@Glis2!0.45!28.81!Glis2;;chr4:124805092..124805135,-!p2@Zc3h12a!0.45!10.29!Zc3h12a;;chr19:5637501..5637517,+!p4@Rela!0.45!9.78!Rela;;chr5:140267510..140267555,+!p2@Mafk!0.45!5.40!Mafk;;chr17:37140628..37140631,+!p2@Zfp57!0.45!4.37!Zfp57;;chr19:28754600..28754612,-!p2@Glis3!0.45!3.34!Glis3;;chr17:37139519..37139531,+!p5@Zfp57!0.45!2.32!Zfp57;;chr16:30066499..30066518,+!p5@Hes1!0.45!2.32!Hes1;;chr3:98186461..98186476,+!p2@Zfp697!0.45!1.80!Zfp697;;chr8:87324243..87324277,-!p1@Nfix!0.44!59.68!Nfix;;chr16:14705925..14705951,+!p1@Snai2!0.44!16.98!Snai2;;chr5:104121453..104121479,+!p4@Aff1!0.44!10.80!Aff1;;chr8:87297280..87297326,-!p2@Nfix!0.44!5.15!Nfix;;chr1:165243653..165243664,-!p4@Prrx1!0.44!2.83!Prrx1;;chr1:165243638..165243649,-!p5@Prrx1!0.44!2.32!Prrx1;;chr1:93698095..93698113,+!p3@Twist2!0.44!2.32!Twist2;;chr15:61818914..61818943,+!p7@Myc!0.44!2.32!Myc;;chr19:5637475..5637486,+!p6@Rela!0.43!5.40!Rela;;chr6:131338435..131338482,-!p1@Csda!0.42!226.90!Csda;;chr7:148452314..148452329,-!p1@Irf7!0.42!15.95!Irf7;;chr15:81977766..81977789,+!p3@Srebf2!0.42!14.15!Srebf2;;chr10:92773818..92773906,-!p2@Elk3!0.42!10.80!Elk3;;chr4:124805061..124805087,-!p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fp219;;chr14:52640344..52640350,-!p17@Zfp219!0.10!0.26!Zfp219;;chr12:57714288..57714305,-!p2@Nkx2-9!0.10!0.26!Nkx2-9;;chr15:25914088..25914091,+!p6@Zfp622!0.10!0.26!Zfp622;;chr14:17408052..17408073,-!p5@Rarb!0.10!0.26!Rarb;;chr12:50485948..50485959,+!p7@Foxg1!0.10!0.26!Foxg1;;chr12:86815639..86815664,+!p2@Fos!0.10!0.26!Fos;;chr11:53164494..53164501,+!p10@Aff4!0.10!0.26!Aff4;;chr10:67001047..67001057,+!p6@Egr2!0.10!0.26!Egr2;;chr10:67599527..67599530,-!p9@Arid5b!0.10!0.26!Arid5b;;chr10:66998241..66998263,+!p2@Egr2!0.10!0.26!Egr2;;chr11:102180656..102180663,-!p24@Ubtf!0.10!0.26!Ubtf;;chr11:23671279..23671293,-!p8@Rel!0.10!0.26!Rel;;chr11:23670827..23670846,-!p3@Rel!0.10!0.26!Rel;;chr11:100553754..100553787,-!p1@Zfp385c!0.10!0.26!Zfp385c;;chr11:100721640..100721658,+!p2@Stat5a!0.10!0.26!Stat5a;;chr10:80811972..80811985,-!p8@Hmg20b!0.10!0.26!Hmg20b;;chr10:77517570..77517581,+!p1@Dnmt3l!0.10!0.26!Dnmt3l;;chr10:30375647..30375658,-!p7@Ncoa7!0.10!0.26!Ncoa7;;chr10:119913766..119913779,-!p10@Hmga2!0.10!0.26!Hmga2;;chr11:100721584..100721587,+!p8@Stat5a!0.10!0.26!Stat5a;;chr11:60034039..60034050,-!p4@Srebf1!0.10!0.26!Srebf1;;chr11:44431115..44431132,+!p9@Ebf1!0.10!0.26!Ebf1;;chr11:44431053..44431060,+!p14@Ebf1!0.10!0.26!Ebf1;;chr11:98614697..98614707,+!p15@Thra!0.10!0.26!Thra;;chr11:98601909..98601922,+!p11@Thra!0.10!0.26!Thra;;chr11:58717647..58717659,-!p3@Zfp39!0.10!0.26!Zfp39;;chr11:96685487..96685512,-!p7@Nfe2l1!0.10!0.26!Nfe2l1;;chr7:135019127..135019137,-!p6@Zfp668!0.10!0.26!Zfp668;;chr6:83661226..83661282,+!p1@Vax2!0.10!0.26!Vax2;;chr7:144505876..144505884,-!p9@Ebf3!0.10!0.26!Ebf3;;chr6:128250448..128250453,-!p8@Tead4!0.10!0.26!Tead4;;chr5:77544170..77544181,-!p6@Hopx!0.10!0.26!Hopx;;chr5:120285130..120285141,+!p3@Tbx5!0.10!0.26!Tbx5;;chr5:46247735..46247746,-!p13@Lcorl!0.10!0.26!Lcorl;;chr5:77695258..77695269,+!p12@Rest!0.10!0.26!Rest;;chr7:13563672..13563687,+!p5@Zfp446!0.10!0.26!Zfp446;;chr6:29476684..29476685,+!p6@Irf5!0.10!0.26!Irf5;;chr6:29479277..29479296,+!p2@Irf5!0.10!0.26!Irf5;;chr6:29479308..29479325,+!p3@Irf5!0.10!0.26!Irf5;;chr7:116093986..116093999,+!p4@Tub!0.10!0.26!Tub;;chr6:90415250..90415271,+!p4@Klf15!0.10!0.26!Klf15;;chr19:12871064..12871095,-!p2@Zfp91!0.10!0.26!Zfp91;;chr18:3337249..3337274,-!p17@Crem!0.10!0.26!Crem;;chr18:52775562..52775650,+!p1@Zfp474!0.10!0.26!Zfp474;;chr18:5591424..5591444,+!p5@Zeb1!0.10!0.26!Zeb1;;chr17:71201050..71201078,-!p9@Tgif1!0.10!0.26!Tgif1;;chr19:23215616..23215627,+!p9@Klf9!0.10!0.26!Klf9;;chr19:46380374..46380397,+!p7@Nfkb2!0.10!0.26!Nfkb2;;chr16:55819071..55819073,-!p11@Nfkbiz!0.10!0.26!Nfkbiz;;chr16:43364012..43364030,+!p22@Zbtb20!0.10!0.26!Zbtb20;;chr17:44873599..44873623,-!p7@Runx2!0.10!0.26!Runx2;;chr16:43235969..43235989,+!p20@Zbtb20!0.10!0.26!Zbtb20;;chr16:30064250..30064282,+!p6@Hes1!0.10!0.26!Hes1;;chr16:55838779..55838788,-!p9@Nfkbiz!0.10!0.26!Nfkbiz;;chr2:9800094..9800108,-!p3@Gata3!0.10!0.26!Gata3;;chr4:118967319..118967330,-!p6@Ybx1!0.10!0.26!Ybx1;;chr4:97444086..97444093,+!p24@Nfia!0.10!0.26!Nfia;;chr4:97444557..97444558,+!p23@Nfia!0.10!0.26!Nfia;;chr2:71384425..71384456,-!p4@Dlx2!0.10!0.26!Dlx2;;chr4:107107224..107107259,+!p2@Glis1!0.10!0.26!Glis1;;chr2:74536050..74536065,+!p2@Hoxd9!0.10!0.26!Hoxd9;;chr2:90936867..90936874,+!p7@Sfpi1!0.10!0.26!Sfpi1;;chr2:74565247..74565258,+!p3@Hoxd4!0.10!0.26!Hoxd4;;chr2:93482426..93482434,+!p3@Alx4!0.10!0.26!Alx4;;chr4:84321280..84321298,-!p5@Bnc2!0.10!0.26!Bnc2;;chr3:29912310..29912321,-!p23@Mecom!0.10!0.26!Mecom;;chr4:48058196..48058205,+!p4@Nr4a3!0.10!0.26!Nr4a3;;chr4:107353480..107353492,-!p9@Dmrtb1!0.10!0.26!Dmrtb1;;chr4:114581497..114581519,-!p2@Foxd2!0.10!0.26!Foxd2;;chr9:55388997..55389016,+!p1@Isl2!0.10!0.26!Isl2;;chr9:106355745..106355766,+!p7@Pcbp4!0.10!0.26!Pcbp4;;chr8:108582687..108582734,+!p4@Nfatc3!0.10!0.26!Nfatc3;;chr8:86590283..86590297,+!p5@Rfx1!0.10!0.26!Rfx1;;chr8:94881639..94881650,+!p5@Irx5!0.10!0.26!Irx5;;chrX:110837933..110837958,+!p2@Dach2!0.10!0.26!Dach2;;chr9:32349051..32349061,-!p5@Fli1!0.10!0.26!Fli1;;chr7:50817698..50817710,+!p4@Zfp658!0.10!0.26!Zfp658;;chr7:19895122..19895142,-!p4@Fosb!0.10!0.26!Fosb;;chr9:32503336..32503360,+!p4@Ets1!0.10!0.26!Ets1;;chr9:113840426..113840435,+!p8@Ubp1!0.10!0.26!Ubp1;;chr8:26950912..26950933,-!p4@Ash2l!0.10!0.26!Ash2l;;chr8:74842792..74842814,+!p2@Klf2!0.10!0.26!Klf2;;chrX:137077530..137077533,-!p11@Tsc22d3!0.10!0.26!Tsc22d3;;chr9:32503263..32503271,+!p10@Ets1!0.10!0.26!Ets1;;chr7:52960663..52960677,+!p6@Dbp!0.10!0.26!Dbp;;chr11:5420973..5420992,+!p1@Xbp1!0.09!116.80!Xbp1;;chr3:103772250..103772317,+!p1@Phtf1!0.09!21.10!Phtf1;;chr6:86475924..86475935,-!p2@Pcbp1!0.09!17.75!Pcbp1;;chr14:79880971..79880992,+!p2@Elf1!0.09!13.63!Elf1;;chr18:69505797..69505852,+!p2@Tcf4!0.09!12.35!Tcf4;;chr17:21625946..21626024,+!p1@Zfp53!0.09!11.32!Zfp53;;chr14:76814601..76814630,+!p5@Tsc22d1!0.09!5.92!Tsc22d1;;chr6:65728988..65729056,+!p1@Prdm5!0.09!4.63!Prdm5;;chr13:30076168..30076222,-!p2@E2f3!0.09!4.37!E2f3;;chr3:32409460..32409483,+!p2@Zfp639!0.09!4.37!Zfp6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| |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000513 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|id=FF:11711-123C1 | |||
|is_a=EFO:0002091;;FF:0000106 | |||
|is_obsolete= | |||
|library_id=CNhs12355 | |||
|library_id_phase_based=2:CNhs12355 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11711 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11711 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Cardiac%2520Myocytes%252c%2520donor1.CNhs12355.11711-123C1.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Cardiac%2520Myocytes%252c%2520donor1.CNhs12355.11711-123C1.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Cardiac%2520Myocytes%252c%2520donor1.CNhs12355.11711-123C1.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Cardiac%2520Myocytes%252c%2520donor1.CNhs12355.11711-123C1.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Cardiac%2520Myocytes%252c%2520donor1.CNhs12355.11711-123C1.mm9.nobarcode.rdna.fa.gz | |||
|name=Mouse Cardiac Myocytes, donor1 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs12355,LSID913,release011,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,0.0091100352968473,0,0,0,0,0.498842954817343,0,0,0,0,0,0,-0.0116186615361689,0,0,0,0,0,0,0,0,0,0,0,0,0.405441408897354,-0.458997888533779,0,0.099424903790252,0,0,0,-0.00660202104714899,0,-0.0826649158045962,0.490195141556008,0.21557956371412,0.099424903790252,0,0,0,0,0,0,0,0,0,0.520527408589401,0.099424903790252,0.114269141782965,0.307290125850945,0,0,0,0,0,0.090137344673203,0,0,0,-0.119021088038573,-0.310650657339386,-0.158091042771083,-0.112249076751733,0,-0.0780086007519514,-0.0379479929572728,0,0,0,-0.0690233610320378,-0.0560617832660446,0.0420121920365668,-0.0788315948399074,0,0,0,0,0,0,0.00846563010767587,-0.0144042360751615,-0.0554609674024984,0,0,0.099424903790252,0.248409380311396,0 | |||
|rna_box=123 | |||
|rna_catalog_number=custom | |||
|rna_concentration=1ug/ul | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=C1 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=123C1 | |||
|rna_weight_ug=10 | |||
|sample_age= | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=N/A | |||
|sample_cell_type=cardiac muscle cell | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Sciencell/3H | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_id=11711 | |||
|sample_note= | |||
|sample_sex= | |||
|sample_species=Mouse (Mus musculus) | |||
|sample_strain= | |||
|sample_tissue=heart | |||
|top_motifs=UFEwm:1.85086367274;IKZF1:1.84473079887;NFE2L2:1.67005209663;TEAD1:1.54863911308;GLI1..3:1.50686672649;NR3C1:1.50569621648;NFE2:1.50255800562;STAT2,4,6:1.48436294905;ZNF238:1.43431370629;HIF1A:1.36581436959;NFE2L1:1.25274972913;TP53:1.23743594594;BACH2:1.23500614208;NKX3-1:1.20332125867;FOXP3:1.15608521298;TLX1..3_NFIC{dimer}:1.13424442965;AR:1.12010748325;MTE{core}:1.10781650355;GCM1,2:1.10704302162;CEBPA,B_DDIT3:1.07584322796;HAND1,2:1.07297119021;FOS_FOS{B,L1}_JUN{B,D}:1.05769768077;ESR1:1.04548958853;NFATC1..3:1.00284764629;DBP:0.991745975577;EVI1:0.954148498812;HES1:0.944975808552;HOXA9_MEIS1:0.920920051912;CDC5L:0.918927930221;T:0.91534130211;DMAP1_NCOR{1,2}_SMARC:0.879893011291;TFAP4:0.87136801364;SRF:0.867123463644;ATF4:0.842415538825;TAL1_TCF{3,4,12}:0.746569080166;TFCP2:0.745697213721;ALX4:0.71429270882;FOSL2:0.702375774181;MYBL2:0.687144941697;ALX1:0.686443577175;ATF6:0.658714971893;HMGA1,2:0.599794750429;IRF7:0.582929975121;ELF1,2,4:0.561585721715;EP300:0.547255955855;TFAP2{A,C}:0.531049057568;HBP1_HMGB_SSRP1_UBTF:0.522637458479;NR1H4:0.490033416763;HOX{A5,B5}:0.48888603218;HLF:0.46367892494;IKZF2:0.455818791448;NFKB1_REL_RELA:0.44610359709;ZNF148:0.433056460453;ELK1,4_GABP{A,B1}:0.431080806467;PAX8:0.401768552202;GATA4:0.387046379126;RXRA_VDR{dimer}:0.375756038206;XCPE1{core}:0.358157469361;MAZ:0.337914366107;GTF2A1,2:0.333611105514;ZNF423:0.329547526232;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.315787349344;IRF1,2:0.29077693809;NKX2-2,8:0.284199823097;MAFB:0.268710960125;GZF1:0.267305426012;PAX2:0.266302445549;GTF2I:0.262726561157;SREBF1,2:0.260167730366;NFIL3:0.256399645315;FOXL1:0.255625142135;SPI1:0.210852513413;PDX1:0.196377823262;RXR{A,B,G}:0.191746703107;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.181067161392;GFI1B:0.173129928272;ETS1,2:0.158547539364;EBF1:0.15791174039;HMX1:0.149046784442;POU2F1..3:0.146487736579;SOX17:0.144609508257;EN1,2:0.140219295567;POU1F1:0.140145244394;TOPORS:0.133602162014;LHX3,4:0.133081959623;EGR1..3:0.123122070902;KLF4:0.118966261116;PAX5:0.1165943454;HSF1,2:0.116352445341;SP1:0.109820784272;PAX4:0.0921406500113;SPIB:0.0529820307113;SPZ1:0.0485493050734;HIC1:0.0182977574145;CREB1:0.0040362002277;RUNX1..3:-0.0144656563937;MTF1:-0.027813214784;RREB1:-0.0279410242811;ONECUT1,2:-0.0344339915805;NHLH1,2:-0.0357504212476;STAT1,3:-0.0558931878139;CDX1,2,4:-0.0569438520212;ZIC1..3:-0.0685557717332;SMAD1..7,9:-0.076443072244;PATZ1:-0.106202184603;NKX2-3_NKX2-5:-0.109528451982;ZBTB6:-0.116936138527;ATF2:-0.125115307826;MYB:-0.131619860264;TFAP2B:-0.162785291427;BPTF:-0.242777542588;NKX2-1,4:-0.244439689267;PRDM1:-0.264053255943;FOX{D1,D2}:-0.300910935278;TBP:-0.305085643106;FOXO1,3,4:-0.308135290842;ZFP161:-0.321504949269;PAX1,9:-0.331052028016;TEF:-0.341414485893;SOX5:-0.351581517864;POU3F1..4:-0.365957271578;ATF5_CREB3:-0.370882049685;MEF2{A,B,C,D}:-0.384514955926;AHR_ARNT_ARNT2:-0.395757607765;MED-1{core}:-0.400499614672;E2F1..5:-0.402578760102;RFX1:-0.410889134631;CRX:-0.423182304241;FOXD3:-0.424500465476;JUN:-0.438868302947;HNF4A_NR2F1,2:-0.451102889449;REST:-0.453849942344;ZNF384:-0.474780577145;ZBTB16:-0.476939923862;FOX{I1,J2}:-0.500416073805;PAX6:-0.51632939898;MZF1:-0.522116788521;HOX{A4,D4}:-0.522975051049;SOX2:-0.527538950016;RORA:-0.532950350955;HNF1A:-0.554436398783;ARID5B:-0.565977352573;TLX2:-0.570633991236;RFX2..5_RFXANK_RFXAP:-0.591183646994;MYFfamily:-0.594165344873;POU5F1:-0.597958524522;ESRRA:-0.607359503724;AIRE:-0.620226555064;TFDP1:-0.623031504263;FOXP1:-0.685271112857;YY1:-0.690801603766;GATA6:-0.724203355648;ADNP_IRX_SIX_ZHX:-0.725179640461;LEF1_TCF7_TCF7L1,2:-0.735430600442;bHLH_family:-0.791942315495;NKX3-2:-0.793515453059;TBX4,5:-0.799351917659;NRF1:-0.800802879741;NR6A1:-0.807321757426;PPARG:-0.810168872105;FOXA2:-0.813151209708;PITX1..3:-0.817299913158;NANOG{mouse}:-0.818734464802;NKX6-1,2:-0.822818304223;FOXN1:-0.823828894855;FOXQ1:-0.849677818244;RBPJ:-0.866881180298;TGIF1:-0.891098500071;PRRX1,2:-0.910003137474;FOXM1:-0.970819150243;ZNF143:-0.97392963786;FOX{F1,F2,J1}:-0.975358689859;STAT5{A,B}:-0.985226570989;NR5A1,2:-0.986801353289;VSX1,2:-1.03422295382;GFI1:-1.08989126033;NANOG:-1.12083324642;BREu{core}:-1.15180328196;NFIX:-1.15490932776;OCT4_SOX2{dimer}:-1.23383423433;NFY{A,B,C}:-1.28131486871;SOX{8,9,10}:-1.33690142309;SNAI1..3:-1.60308802204;CUX2:-1.68902376131;PBX1:-1.7608105934;ZEB1:-1.79878040143;MYOD1:-1.90531514213;POU6F1:-1.99967629854;LMO2:-2.56376230373 | |top_motifs=UFEwm:1.85086367274;IKZF1:1.84473079887;NFE2L2:1.67005209663;TEAD1:1.54863911308;GLI1..3:1.50686672649;NR3C1:1.50569621648;NFE2:1.50255800562;STAT2,4,6:1.48436294905;ZNF238:1.43431370629;HIF1A:1.36581436959;NFE2L1:1.25274972913;TP53:1.23743594594;BACH2:1.23500614208;NKX3-1:1.20332125867;FOXP3:1.15608521298;TLX1..3_NFIC{dimer}:1.13424442965;AR:1.12010748325;MTE{core}:1.10781650355;GCM1,2:1.10704302162;CEBPA,B_DDIT3:1.07584322796;HAND1,2:1.07297119021;FOS_FOS{B,L1}_JUN{B,D}:1.05769768077;ESR1:1.04548958853;NFATC1..3:1.00284764629;DBP:0.991745975577;EVI1:0.954148498812;HES1:0.944975808552;HOXA9_MEIS1:0.920920051912;CDC5L:0.918927930221;T:0.91534130211;DMAP1_NCOR{1,2}_SMARC:0.879893011291;TFAP4:0.87136801364;SRF:0.867123463644;ATF4:0.842415538825;TAL1_TCF{3,4,12}:0.746569080166;TFCP2:0.745697213721;ALX4:0.71429270882;FOSL2:0.702375774181;MYBL2:0.687144941697;ALX1:0.686443577175;ATF6:0.658714971893;HMGA1,2:0.599794750429;IRF7:0.582929975121;ELF1,2,4:0.561585721715;EP300:0.547255955855;TFAP2{A,C}:0.531049057568;HBP1_HMGB_SSRP1_UBTF:0.522637458479;NR1H4:0.490033416763;HOX{A5,B5}:0.48888603218;HLF:0.46367892494;IKZF2:0.455818791448;NFKB1_REL_RELA:0.44610359709;ZNF148:0.433056460453;ELK1,4_GABP{A,B1}:0.431080806467;PAX8:0.401768552202;GATA4:0.387046379126;RXRA_VDR{dimer}:0.375756038206;XCPE1{core}:0.358157469361;MAZ:0.337914366107;GTF2A1,2:0.333611105514;ZNF423:0.329547526232;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.315787349344;IRF1,2:0.29077693809;NKX2-2,8:0.284199823097;MAFB:0.268710960125;GZF1:0.267305426012;PAX2:0.266302445549;GTF2I:0.262726561157;SREBF1,2:0.260167730366;NFIL3:0.256399645315;FOXL1:0.255625142135;SPI1:0.210852513413;PDX1:0.196377823262;RXR{A,B,G}:0.191746703107;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.181067161392;GFI1B:0.173129928272;ETS1,2:0.158547539364;EBF1:0.15791174039;HMX1:0.149046784442;POU2F1..3:0.146487736579;SOX17:0.144609508257;EN1,2:0.140219295567;POU1F1:0.140145244394;TOPORS:0.133602162014;LHX3,4:0.133081959623;EGR1..3:0.123122070902;KLF4:0.118966261116;PAX5:0.1165943454;HSF1,2:0.116352445341;SP1:0.109820784272;PAX4:0.0921406500113;SPIB:0.0529820307113;SPZ1:0.0485493050734;HIC1:0.0182977574145;CREB1:0.0040362002277;RUNX1..3:-0.0144656563937;MTF1:-0.027813214784;RREB1:-0.0279410242811;ONECUT1,2:-0.0344339915805;NHLH1,2:-0.0357504212476;STAT1,3:-0.0558931878139;CDX1,2,4:-0.0569438520212;ZIC1..3:-0.0685557717332;SMAD1..7,9:-0.076443072244;PATZ1:-0.106202184603;NKX2-3_NKX2-5:-0.109528451982;ZBTB6:-0.116936138527;ATF2:-0.125115307826;MYB:-0.131619860264;TFAP2B:-0.162785291427;BPTF:-0.242777542588;NKX2-1,4:-0.244439689267;PRDM1:-0.264053255943;FOX{D1,D2}:-0.300910935278;TBP:-0.305085643106;FOXO1,3,4:-0.308135290842;ZFP161:-0.321504949269;PAX1,9:-0.331052028016;TEF:-0.341414485893;SOX5:-0.351581517864;POU3F1..4:-0.365957271578;ATF5_CREB3:-0.370882049685;MEF2{A,B,C,D}:-0.384514955926;AHR_ARNT_ARNT2:-0.395757607765;MED-1{core}:-0.400499614672;E2F1..5:-0.402578760102;RFX1:-0.410889134631;CRX:-0.423182304241;FOXD3:-0.424500465476;JUN:-0.438868302947;HNF4A_NR2F1,2:-0.451102889449;REST:-0.453849942344;ZNF384:-0.474780577145;ZBTB16:-0.476939923862;FOX{I1,J2}:-0.500416073805;PAX6:-0.51632939898;MZF1:-0.522116788521;HOX{A4,D4}:-0.522975051049;SOX2:-0.527538950016;RORA:-0.532950350955;HNF1A:-0.554436398783;ARID5B:-0.565977352573;TLX2:-0.570633991236;RFX2..5_RFXANK_RFXAP:-0.591183646994;MYFfamily:-0.594165344873;POU5F1:-0.597958524522;ESRRA:-0.607359503724;AIRE:-0.620226555064;TFDP1:-0.623031504263;FOXP1:-0.685271112857;YY1:-0.690801603766;GATA6:-0.724203355648;ADNP_IRX_SIX_ZHX:-0.725179640461;LEF1_TCF7_TCF7L1,2:-0.735430600442;bHLH_family:-0.791942315495;NKX3-2:-0.793515453059;TBX4,5:-0.799351917659;NRF1:-0.800802879741;NR6A1:-0.807321757426;PPARG:-0.810168872105;FOXA2:-0.813151209708;PITX1..3:-0.817299913158;NANOG{mouse}:-0.818734464802;NKX6-1,2:-0.822818304223;FOXN1:-0.823828894855;FOXQ1:-0.849677818244;RBPJ:-0.866881180298;TGIF1:-0.891098500071;PRRX1,2:-0.910003137474;FOXM1:-0.970819150243;ZNF143:-0.97392963786;FOX{F1,F2,J1}:-0.975358689859;STAT5{A,B}:-0.985226570989;NR5A1,2:-0.986801353289;VSX1,2:-1.03422295382;GFI1:-1.08989126033;NANOG:-1.12083324642;BREu{core}:-1.15180328196;NFIX:-1.15490932776;OCT4_SOX2{dimer}:-1.23383423433;NFY{A,B,C}:-1.28131486871;SOX{8,9,10}:-1.33690142309;SNAI1..3:-1.60308802204;CUX2:-1.68902376131;PBX1:-1.7608105934;ZEB1:-1.79878040143;MYOD1:-1.90531514213;POU6F1:-1.99967629854;LMO2:-2.56376230373 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11711-123C1;search_select_hide=table117:11711-123C1 | |||
}} | }} |
Latest revision as of 18:15, 4 June 2020
Name: | Mouse Cardiac Myocytes, donor1 |
---|---|
Species: | Mouse (Mus musculus) |
Library ID: | CNhs12355 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs12355
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.0639 |
1001 | -0.00986 |
1002 | 0.425 |
1003 | 0.14 |
1004 | 0 |
1005 | 0 |
1006 | -0.302 |
1007 | -0.201 |
1008 | 0 |
1009 | 0.56 |
101 | -0.0743 |
1010 | 0 |
1011 | -0.198 |
1012 | 0 |
1013 | 0.0555 |
1014 | 0.00488 |
1015 | -0.0304 |
1016 | 0.106 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0.18 |
1021 | 0.0994 |
1022 | -0.0704 |
1023 | 0 |
1024 | -0.14 |
1025 | 0 |
1026 | 0 |
1027 | 0 |
1028 | 0.0994 |
1029 | -0.12 |
103 | 0.549 |
1030 | 0 |
1031 | 0.732 |
1032 | 0.0785 |
1033 | -0.0752 |
1034 | 0 |
1035 | 0 |
1036 | -0.0803 |
1037 | 0 |
1038 | -5.64625e-4 |
1039 | -0.154 |
104 | 0 |
1040 | 0.526 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12355
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12355
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.879 |
10 | 10 | 0.222 |
100 | 100 | 0.478 |
101 | 101 | 0.395 |
102 | 102 | 0.128 |
103 | 103 | 0.817 |
104 | 104 | 0.233 |
105 | 105 | 0.402 |
106 | 106 | 0.0116 |
107 | 107 | 0.369 |
108 | 108 | 0.564 |
109 | 109 | 0.0228 |
11 | 11 | 0.474 |
110 | 110 | 0.199 |
111 | 111 | 0.856 |
112 | 112 | 0.94 |
113 | 113 | 0.471 |
114 | 114 | 0.282 |
115 | 115 | 0.957 |
116 | 116 | 0.0829 |
117 | 117 | 0.0643 |
118 | 118 | 0.886 |
119 | 119 | 0.679 |
12 | 12 | 0.912 |
120 | 120 | 0.402 |
121 | 121 | 0.353 |
122 | 122 | 0.0654 |
123 | 123 | 0.795 |
124 | 124 | 0.494 |
125 | 125 | 0.118 |
126 | 126 | 0.119 |
127 | 127 | 0.0399 |
128 | 128 | 0.0261 |
129 | 129 | 0.241 |
13 | 13 | 0.0737 |
130 | 130 | 0.991 |
131 | 131 | 0.0884 |
132 | 132 | 0.188 |
133 | 133 | 0.201 |
134 | 134 | 0.82 |
135 | 135 | 0.756 |
136 | 136 | 0.033 |
137 | 137 | 0.718 |
138 | 138 | 0.904 |
139 | 139 | 0.817 |
14 | 14 | 0.334 |
140 | 140 | 0.507 |
141 | 141 | 0.318 |
142 | 142 | 0.826 |
143 | 143 | 0.0755 |
144 | 144 | 0.217 |
145 | 145 | 0.237 |
146 | 146 | 0.717 |
147 | 147 | 0.315 |
148 | 148 | 0.983 |
149 | 149 | 0.00557 |
15 | 15 | 0.128 |
150 | 150 | 0.041 |
151 | 151 | 0.612 |
152 | 152 | 0.00866 |
153 | 153 | 0.744 |
154 | 154 | 0.768 |
155 | 155 | 0.186 |
156 | 156 | 0.997 |
157 | 157 | 0.451 |
158 | 158 | 0.698 |
159 | 159 | 0.0776 |
160 | 160 | 0.924 |
161 | 161 | 0.471 |
162 | 162 | 0.392 |
163 | 163 | 0.436 |
164 | 164 | 0.296 |
165 | 165 | 0.37 |
166 | 166 | 0.761 |
167 | 167 | 0.539 |
168 | 168 | 0.709 |
169 | 169 | 0.0198 |
17 | 17 | 0.32 |
18 | 18 | 0.36 |
19 | 19 | 0.0392 |
2 | 2 | 0.383 |
20 | 20 | 0.221 |
21 | 21 | 0.14 |
22 | 22 | 0.139 |
23 | 23 | 0.324 |
24 | 24 | 0.0677 |
25 | 25 | 0.154 |
26 | 26 | 0.0479 |
27 | 27 | 0.287 |
28 | 28 | 0.61 |
29 | 29 | 0.0278 |
3 | 3 | 0.377 |
30 | 30 | 0.36 |
31 | 31 | 0.807 |
32 | 32 | 0.154 |
33 | 33 | 0.95 |
34 | 34 | 0.957 |
35 | 35 | 0.255 |
36 | 36 | 0.556 |
37 | 37 | 0.0312 |
38 | 38 | 0.423 |
39 | 39 | 0.164 |
4 | 4 | 0.323 |
40 | 40 | 0.684 |
41 | 41 | 0.992 |
42 | 42 | 0.543 |
43 | 43 | 0.0674 |
44 | 44 | 0.337 |
45 | 45 | 0.931 |
46 | 46 | 0.657 |
47 | 47 | 0.722 |
48 | 48 | 0.942 |
49 | 49 | 0.92 |
5 | 5 | 0.933 |
50 | 50 | 0.11 |
51 | 51 | 0.696 |
52 | 52 | 0.528 |
53 | 53 | 0.735 |
54 | 54 | 0.546 |
55 | 55 | 0.987 |
56 | 56 | 0.819 |
57 | 57 | 0.796 |
58 | 58 | 0.534 |
59 | 59 | 0.0171 |
6 | 6 | 0.429 |
60 | 60 | 0.465 |
61 | 61 | 0.362 |
62 | 62 | 0.954 |
63 | 63 | 0.352 |
64 | 64 | 0.37 |
65 | 65 | 0.224 |
66 | 66 | 0.796 |
67 | 67 | 0.81 |
68 | 68 | 0.145 |
69 | 69 | 0.984 |
7 | 7 | 0.957 |
70 | 70 | 0.0158 |
71 | 71 | 0.2 |
72 | 72 | 0.771 |
73 | 73 | 0.0016 |
74 | 74 | 0.464 |
75 | 75 | 0.161 |
76 | 76 | 0.667 |
77 | 77 | 0.0415 |
78 | 78 | 0.023 |
79 | 79 | 0.223 |
8 | 8 | 0.623 |
80 | 80 | 0.0224 |
81 | 81 | 0.819 |
82 | 82 | 0.987 |
83 | 83 | 0.629 |
84 | 84 | 0.854 |
85 | 85 | 0.145 |
86 | 86 | 0.572 |
87 | 87 | 0.00877 |
88 | 88 | 0.297 |
89 | 89 | 0.78 |
9 | 9 | 0.774 |
90 | 90 | 0.881 |
91 | 91 | 0.523 |
92 | 92 | 0.0978 |
93 | 93 | 0.575 |
94 | 94 | 0.796 |
95 | 95 | 0.00142 |
96 | 96 | 0.203 |
97 | 97 | 0.264 |
98 | 98 | 0.406 |
99 | 99 | 0.898 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12355
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000106 mouse cardiac myocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000737 (striated muscle cell)
0000746 (cardiac muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000106 (mouse cardiac myocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000513 (cardiac muscle myoblast)