FF:11784-124B2: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD4+CD25-CD45RA+ naive conventional T cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13223
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004701

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13223		CAGE		DRX008190		DRR009062

Accession ID Hg19

Library id		BAM		CTSS
CNhs13223		DRZ000487		DRZ001872

Accession ID Hg38

Library id		BAM		CTSS
CNhs13223		DRZ011837		DRZ013222

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.113
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.261
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.202
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.42
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.00241
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.217
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.303
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.716
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.449
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.933
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0526
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0877
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.113
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.574
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0797
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.822
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.16
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.452
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.452
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.186
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.755
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.113
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.847
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.885
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.726
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.605
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.55
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.861
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.0601
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.958
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.202
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.0601
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0601
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13223

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	6.77667e-4
MA0003.1	MA0003.1	0.39
MA0004.1	MA0004.1	0.922
MA0006.1	MA0006.1	0.0583
MA0007.1	MA0007.1	0.888
MA0009.1	MA0009.1	0.279
MA0014.1	MA0014.1	0.598
MA0017.1	MA0017.1	0.615
MA0018.2	MA0018.2	6.48717e-8
MA0019.1	MA0019.1	0.931
MA0024.1	MA0024.1	0.592
MA0025.1	MA0025.1	0.349
MA0027.1	MA0027.1	0.744
MA0028.1	MA0028.1	9.56932e-5
MA0029.1	MA0029.1	0.328
MA0030.1	MA0030.1	0.0237
MA0031.1	MA0031.1	1.1291e-4
MA0035.2	MA0035.2	0.329
MA0038.1	MA0038.1	0.107
MA0039.2	MA0039.2	0.915
MA0040.1	MA0040.1	0.675
MA0041.1	MA0041.1	0.311
MA0042.1	MA0042.1	0.94
MA0043.1	MA0043.1	0.018
MA0046.1	MA0046.1	0.179
MA0047.2	MA0047.2	0.182
MA0048.1	MA0048.1	0.769
MA0050.1	MA0050.1	1.82027e-4
MA0051.1	MA0051.1	0.0175
MA0052.1	MA0052.1	0.00643
MA0055.1	MA0055.1	0.98
MA0057.1	MA0057.1	0.489
MA0058.1	MA0058.1	0.967
MA0059.1	MA0059.1	0.807
MA0060.1	MA0060.1	0.355
MA0061.1	MA0061.1	0.292
MA0062.2	MA0062.2	4.09262e-16
MA0065.2	MA0065.2	0.525
MA0066.1	MA0066.1	0.833
MA0067.1	MA0067.1	0.0334
MA0068.1	MA0068.1	0.378
MA0069.1	MA0069.1	0.97
MA0070.1	MA0070.1	0.687
MA0071.1	MA0071.1	0.596
MA0072.1	MA0072.1	0.612
MA0073.1	MA0073.1	0.976
MA0074.1	MA0074.1	0.447
MA0076.1	MA0076.1	6.69874e-7
MA0077.1	MA0077.1	0.0279
MA0078.1	MA0078.1	0.75
MA0079.2	MA0079.2	0.566
MA0080.2	MA0080.2	1.07167e-10
MA0081.1	MA0081.1	0.0168
MA0083.1	MA0083.1	0.0109
MA0084.1	MA0084.1	0.333
MA0087.1	MA0087.1	0.574
MA0088.1	MA0088.1	0.273
MA0090.1	MA0090.1	5.06345e-4
MA0091.1	MA0091.1	0.539
MA0092.1	MA0092.1	0.759
MA0093.1	MA0093.1	0.943
MA0099.2	MA0099.2	1.98773e-9
MA0100.1	MA0100.1	0.567
MA0101.1	MA0101.1	0.402
MA0102.2	MA0102.2	0.596
MA0103.1	MA0103.1	0.234
MA0104.2	MA0104.2	0.0696
MA0105.1	MA0105.1	0.00649
MA0106.1	MA0106.1	0.0736
MA0107.1	MA0107.1	0.27
MA0108.2	MA0108.2	1.32703e-9
MA0111.1	MA0111.1	0.217
MA0112.2	MA0112.2	0.61
MA0113.1	MA0113.1	0.568
MA0114.1	MA0114.1	0.781
MA0115.1	MA0115.1	0.593
MA0116.1	MA0116.1	0.00621
MA0117.1	MA0117.1	0.0958
MA0119.1	MA0119.1	0.553
MA0122.1	MA0122.1	0.666
MA0124.1	MA0124.1	0.559
MA0125.1	MA0125.1	0.0956
MA0131.1	MA0131.1	0.0642
MA0135.1	MA0135.1	0.075
MA0136.1	MA0136.1	4.15826e-22
MA0137.2	MA0137.2	0.515
MA0138.2	MA0138.2	0.33
MA0139.1	MA0139.1	0.103
MA0140.1	MA0140.1	0.372
MA0141.1	MA0141.1	0.184
MA0142.1	MA0142.1	0.0597
MA0143.1	MA0143.1	0.0939
MA0144.1	MA0144.1	0.469
MA0145.1	MA0145.1	0.0315
MA0146.1	MA0146.1	0.779
MA0147.1	MA0147.1	0.0893
MA0148.1	MA0148.1	0.31
MA0149.1	MA0149.1	0.248
MA0150.1	MA0150.1	0.0527
MA0152.1	MA0152.1	7.37445e-4
MA0153.1	MA0153.1	0.229
MA0154.1	MA0154.1	0.487
MA0155.1	MA0155.1	0.281
MA0156.1	MA0156.1	1.06941e-18
MA0157.1	MA0157.1	1.03947e-4
MA0159.1	MA0159.1	0.837
MA0160.1	MA0160.1	0.434
MA0162.1	MA0162.1	0.21
MA0163.1	MA0163.1	2.05226e-5
MA0164.1	MA0164.1	0.891
MA0258.1	MA0258.1	0.964
MA0259.1	MA0259.1	0.0969

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13223

Novel motif	Logo	P-value
1	1	0.542
10	10	0.0201
100	100	0.587
101	101	0.23
102	102	0.795
103	103	0.877
104	104	0.924
105	105	0.536
106	106	0.787
107	107	6.93466e-4
108	108	0.557
109	109	0.348
11	11	0.372
110	110	0.926
111	111	0.616
112	112	0.859
113	113	0.431
114	114	0.641
115	115	0.23
116	116	0.201
117	117	0.00193
118	118	0.33
119	119	0.115
12	12	0.767
120	120	0.709
121	121	0.847
122	122	0.764
123	123	5.31024e-4
124	124	0.596
125	125	0.564
126	126	0.893
127	127	0.989
128	128	0.376
129	129	0.737
13	13	0.724
130	130	0.343
131	131	0.312
132	132	0.572
133	133	0.821
134	134	0.596
135	135	0.768
136	136	0.705
137	137	0.0295
138	138	0.348
139	139	0.0912
14	14	0.699
140	140	0.266
141	141	0.478
142	142	0.356
143	143	0.00882
144	144	0.838
145	145	0.629
146	146	0.911
147	147	0.0128
148	148	0.406
149	149	0.298
15	15	0.318
150	150	0.883
151	151	0.515
152	152	0.169
153	153	0.756
154	154	0.308
155	155	0.0216
156	156	0.976
157	157	0.475
158	158	0.00367
159	159	0.891
16	16	0.456
160	160	0.334
161	161	0.93
162	162	0.0961
163	163	0.351
164	164	0.11
165	165	0.575
166	166	0.431
167	167	0.0944
168	168	0.93
169	169	0.134
17	17	0.459
18	18	0.636
19	19	0.0558
2	2	0.284
20	20	0.364
21	21	0.523
22	22	0.301
23	23	0.304
24	24	0.656
25	25	0.112
26	26	0.938
27	27	0.638
28	28	0.651
29	29	0.0364
3	3	0.255
30	30	0.0925
31	31	0.602
32	32	0.0189
33	33	0.219
34	34	0.275
35	35	0.132
36	36	0.0326
37	37	0.4
38	38	0.77
39	39	0.134
4	4	0.583
40	40	0.942
41	41	0.23
42	42	0.166
43	43	0.663
44	44	0.936
45	45	0.213
46	46	0.587
47	47	0.242
48	48	0.469
49	49	0.142
5	5	0.591
50	50	0.443
51	51	0.96
52	52	0.236
53	53	0.567
54	54	0.841
55	55	0.808
56	56	0.968
57	57	0.844
58	58	0.19
59	59	0.409
6	6	0.781
60	60	0.982
61	61	0.097
62	62	0.209
63	63	0.894
64	64	0.586
65	65	0.63
66	66	0.695
67	67	0.715
68	68	0.752
69	69	0.846
7	7	0.532
70	70	0.124
71	71	0.151
72	72	0.161
73	73	0.778
74	74	0.72
75	75	0.00825
76	76	0.12
77	77	0.0096
78	78	0.643
79	79	0.756
8	8	0.635
80	80	0.0324
81	81	0.395
82	82	0.256
83	83	0.593
84	84	0.619
85	85	0.318
86	86	0.292
87	87	0.421
88	88	0.972
89	89	0.0582
9	9	0.753
90	90	0.0332
91	91	0.574
92	92	0.92
93	93	0.899
94	94	0.379
95	95	0.205
96	96	0.371
97	97	0.346
98	98	0.287
99	99	1.40109e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13223

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008083
+|DRA_sample_Accession=CAGE@SAMD00004701
-|accession_numbers=CAGE;DRX008190;DRR009062;DRZ000487;DRZ001872
+|accession_numbers=CAGE;DRX008190;DRR009062;DRZ000487;DRZ001872;DRZ011837;DRZ013222
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.40!250.75!TCF7;;chr4:109087445..109087463,-!p1@LEF1!2.33!212.79!LEF1;;chr3:63953435..63953499,+!p1@ATXN7!2.17!147.69!ATXN7;;chr6:91006518..91006570,-!p1@BACH2!2.00!219.61!BACH2;;chr7:50343634..50343717,+!p2@IKZF1!1.97!92.68!IKZF1;;chr5:133450365..133450444,+!p1@TCF7!1.95!384.95!TCF7;;chr3:71355163..71355209,-!p5@FOXP1!1.94!116.55!FOXP1;;chr3:71542615..71542644,-!p12@FOXP1!1.90!78.15!FOXP1;;chr2:192015701..192015743,-!p1@STAT4!1.86!97.72!STAT4;;chr4:109090075..109090095,-!p2@LEF1!1.83!66.73!LEF1;;chr3:18486354..18486377,-!p2@SATB1!1.79!75.03!SATB1;;chr19:16435625..16435682,+!p1@KLF2!1.78!1768.17!KLF2;;chr5:133451347..133451358,+!p3@TCF7!1.76!56.79!TCF7;;chr19:54058073..54058088,+!p1@ZNF331!1.74!53.38!ZNF331;;chrY:21906594..21906622,-!p1@KDM5D!1.71!50.86!KDM5D;;chr2:231090433..231090469,+!p1@SP140!1.65!43.45!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.63!55.16!STAT4;;chrX:106960285..106960299,-!p1@TSC22D3!1.62!1030.15!TSC22D3;;chr10:35484053..35484076,+!p1@CREM!1.61!96.68!CREM;;chr9:3525727..3525828,-!p2@RFX3!1.58!91.34!RFX3;;chr19:54041669..54041697,+!p2@ZNF331!1.58!37.22!ZNF331;;chr6:91006575..91006602,-!p2@BACH2!1.56!52.05!BACH2;;chr8:123793988..123794016,+!p1@ZHX2!1.50!52.49!ZHX2;;chr7:50343895..50343936,+!p5@IKZF1!1.50!30.55!IKZF1;;chr19:45971246..45971265,+!p1@FOSB!1.48!524.34!FOSB;;chr17:38497662..38497713,+!p4@RARA!1.48!33.96!RARA;;chr7:50344251..50344288,+!p3@IKZF1!1.48!29.36!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.47!75.77!AKNA;;chr4:109089573..109089585,-!p8@LEF1!1.47!28.77!LEF1;;chr2:97202991..97203043,+!p3@ARID5A!1.47!28.32!ARID5A;;chr3:18480217..18480239,-!p3@SATB1!1.46!27.88!SATB1;;chr19:12902289..12902307,+!p1@JUNB!1.44!5786.73!JUNB;;chr21:36421535..36421610,-!p2@RUNX1!1.44!91.79!RUNX1;;chr10:35416142..35416169,+!p3@CREM!1.41!63.91!CREM;;chr20:50159198..50159299,-!p1@NFATC2!1.40!35.00!NFATC2;;chr3:71542651..71542683,-!p22@FOXP1!1.40!24.02!FOXP1;;chr2:157189180..157189290,-!p1@NR4A2!1.38!117.29!NR4A2;;chr11:128392273..128392308,-!p2@ETS1!1.36!91.20!ETS1;;chr7:50348268..50348366,+!p4@IKZF1!1.36!21.80!IKZF1;;chr3:18487057..18487105,-!p4@SATB1!1.35!21.35!SATB1;;chr6:91006503..91006517,-!p3@BACH2!1.34!21.06!BACH2;;chr4:109089901..109089930,-!p3@LEF1!1.34!20.76!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.33!20.46!IKZF1;;chr3:71542684..71542720,-!p18@FOXP1!1.30!18.98!FOXP1;;chr19:19779619..19779670,+!p1@ZNF101!1.28!49.82!ZNF101;;chr19:45972701..45972774,+!p2@FOSB!1.28!24.62!FOSB;;chr20:51588873..51588953,+!p1@TSHZ2!1.28!23.58!TSHZ2;;chr14:75745523..75745537,+!p1@FOS!1.27!2037.31!FOS;;chr10:8096772..8096787,+!p2@GATA3!1.26!20.17!GATA3;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.25!92.53!ZNF10;;chr13:41593425..41593480,-!p1@ELF1!1.24!103.06!ELF1;;chr1:25256756..25256774,-!p1@RUNX3!1.24!30.55!RUNX3;;chr10:8096631..8096660,+!p1@GATA3!1.23!19.13!GATA3;;chr2:231090471..231090504,+!p2@SP140!1.23!16.01!SP140;;chr9:20620829..20620848,-!p7@MLLT3!1.23!16.01!MLLT3;;chrX:101186981..101187030,-!p1@ZMAT1!1.22!50.42!ZMAT1;;chr4:38665769..38665801,+!p2@KLF3!1.21!135.98!KLF3;;chr16:3313791..3313834,+!p2@ZNF263!1.20!32.62!ZNF263;;chr14:64970670..64970712,-!p3@ZBTB25!1.19!31.44!ZBTB25;;chr10:35484090..35484104,+!p6@CREM!1.19!14.53!CREM;;chr4:109086281..109086319,-!p9@LEF1!1.19!14.38!LEF1;;chr6:391743..391759,+!p1@IRF4!1.18!14.24!IRF4;;chr15:60884706..60884743,-!p1@RORA!1.17!71.03!RORA;;chr19:16435423..16435484,+!p5@KLF2!1.17!13.79!KLF2;;chr11:128392085..128392232,-!p1@ETS1!1.16!447.97!ETS1;;chr2:100759037..100759058,-!p2@AFF3!1.16!13.49!AFF3;;chr9:102584262..102584276,+!p1@NR4A3!1.15!29.51!NR4A3;;chr1:45805693..45805718,+!p3@TOE1!1.15!28.32!TOE1;;chr6:12009042..12009092,+!p6@HIVEP1!1.15!17.05!HIVEP1;;chr2:97202480..97202499,+!p1@ARID5A!1.14!129.16!ARID5A;;chr4:109088089..109088101,-!p11@LEF1!1.14!12.75!LEF1;;chr3:18466787..18466839,-!p1@SATB1!1.13!55.61!SATB1;;chr14:64971288..64971316,-!p2@ZBTB25!1.13!38.55!ZBTB25;;chr3:71353892..71353928,-!p31@FOXP1!1.12!12.31!FOXP1;;chr14:99738138..99738163,-!p1@BCL11B!1.12!12.31!BCL11B;;chr19:54041645..54041661,+!p5@ZNF331!1.12!12.31!ZNF331;;chr3:18480173..18480189,-!p6@SATB1!1.11!12.01!SATB1;;chr19:54040550..54040594,+!p20@ZNF331!1.11!11.86!ZNF331;;chrX:106960221..106960236,-!p3@TSC22D3!1.10!32.03!TSC22D3;;chr3:114819124..114819200,-!p3@ZBTB20!1.10!27.14!ZBTB20;;chr12:72056800..72056834,+!p1@THAP2!1.10!15.57!THAP2;;chr19:19729477..19729542,-!p1@PBX4!1.08!23.73!PBX4;;chr3:71179699..71179744,-!p2@FOXP1!1.07!81.71!FOXP1;;chr13:41240717..41240735,-!p2@FOXO1!1.07!73.40!FOXO1;;chr13:74707894..74707947,-!p6@KLF12!1.07!11.86!KLF12;;chr17:38020392..38020477,-!p1@IKZF3!1.07!10.82!IKZF3;;chr3:71542747..71542766,-!p34@FOXP1!1.07!10.68!FOXP1;;chr8:81397846..81397860,+!p3@ZBTB10!1.06!13.05!ZBTB10;;chr2:208394817..208394834,+!p3@CREB1!1.05!41.82!CREB1;;chr19:12444440..12444455,-!p1@ZNF563!1.05!17.94!ZNF563;;chr4:38665810..38665827,+!p1@KLF3!1.04!146.06!KLF3;;chr2:100759010..100759035,-!p1@AFF3!1.04!9.94!AFF3;;chr2:192015677..192015691,-!p3@STAT4!1.04!9.94!STAT4;;chr17:56565257..56565283,-!p2@HSF5!1.04!9.94!HSF5;;chr14:65569101..65569119,-!p3@MAX!1.03!31.29!MAX;;chr4:149363494..149363543,-!p1@NR3C2!1.03!9.64!NR3C2;;chr4:109089996..109090012,-!p5@LEF1!1.02!9.49!LEF1;;chr6:143266297..143266356,-!p1@HIVEP2!1.01!45.38!HIVEP2;;chr19:38085768..38085821,+!p1@ZNF540!1.01!14.09!ZNF540;;chr19:54041574..54041589,+!p6@ZNF331!1.01!9.19!ZNF331;;chr16:68119324..68119364,+!p1@NFATC3!1.00!40.93!NFATC3;;chr7:21467674..21467727,+!p1@SP4!1.00!36.33!SP4;;chr4:109088130..109088163,-!p13@LEF1!1.00!8.90!LEF1;;chr10:35485013..35485034,+!p15@CREM!1.00!8.90!CREM;;chr11:128563948..128564003,+!p1@FLI1!0.99!108.40!FLI1;;chr2:208031542..208031595,-!p2@KLF7!0.99!63.61!KLF7;;chr9:20621927..20621996,-!p3@MLLT3!0.99!15.13!MLLT3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.98!939.54!ZFP36L2;;chr11:67007548..67007610,+!p3@KDM2A!0.98!65.69!KDM2A;;chr9:20622444..20622468,-!p2@MLLT3!0.98!28.47!MLLT3;;chr10:35416125..35416138,+!p10@CREM!0.98!10.08!CREM;;chr10:35416223..35416234,+!p12@CREM!0.98!8.60!CREM;;chr2:157189617..157189667,-!p4@NR4A2!0.98!8.45!NR4A2;;chr4:109088940..109089037,-!p4@LEF1!0.97!8.30!LEF1;;chr13:41240737..41240787,-!p1@FOXO1!0.96!99.50!FOXO1;;chr3:39195075..39195088,-!p1@CSRNP1!0.96!51.90!CSRNP1;;chr2:148778973..148779035,+!p3@MBD5!0.96!21.65!MBD5;;chr9:114287433..114287513,+!p1@ZNF483!0.96!21.65!ZNF483;;chr19:16435523..16435619,+!p2@KLF2!0.96!11.42!KLF2;;chr15:60884747..60884774,-!p3@RORA!0.95!19.72!RORA;;chr17:38020516..38020544,-!p5@IKZF3!0.95!7.86!IKZF3;;chr10:35416172..35416184,+!p13@CREM!0.95!7.86!CREM;;chr4:109090054..109090073,-!p7@LEF1!0.94!7.71!LEF1;;chr20:51589835..51589848,+!p5@TSHZ2!0.94!7.71!TSHZ2;;chr3:63898321..63898396,+!p3@ATXN7!0.93!17.65!ATXN7;;chr17:38020481..38020506,-!p7@IKZF3!0.93!7.56!IKZF3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.92!398.15!NFKBIZ;;chr6:12008986..12009016,+!p3@HIVEP1!0.92!23.43!HIVEP1;;chr16:89787937..89787971,+!p1@ZNF276!0.92!19.43!ZNF276;;chr3:23986824..23986848,+!p2@NR1D2!0.91!41.97!NR1D2;;chrX:106960180..106960197,-!p2@TSC22D3!0.91!28.62!TSC22D3;;chr9:3525867..3525902,-!p3@RFX3!0.91!25.36!RFX3;;chr14:75988771..75988826,+!p1@BATF!0.91!9.64!BATF;;chr8:41909982..41910009,-!p2@KAT6A!0.91!8.16!KAT6A;;chr14:64971893..64971928,-!p8@ZBTB25!0.91!7.12!ZBTB25;;chr19:49140609..49140643,-!p1@DBP!0.90!41.08!DBP;;chr19:52674696..52674758,-!p1@ZNF836!0.90!21.20!ZNF836;;chr9:20622478..20622525,-!p1@MLLT3!0.89!56.05!MLLT3;;chr18:77155922..77155939,+!p1@NFATC1!0.89!19.43!NFATC1;;chr11:128392309..128392350,-!p3@ETS1!0.89!16.76!ETS1;;chr19:12721790..12721810,+!p2@ZNF791!0.88!18.83!ZNF791;;chr19:54041603..54041615,+!p10@ZNF331!0.88!6.67!ZNF331;;chrY:2803415..2803468,+!p1@ZFY!0.88!6.52!ZFY;;chr15:31619326..31619390,+!p2@KLF13!0.87!78.15!KLF13;;chr19:20748574..20748599,-!p1@ZNF737!0.87!40.63!ZNF737;;chr2:178128250..178128293,-!p6@NFE2L2!0.87!16.90!NFE2L2;;chr9:32550965..32551031,-!p4@TOPORS!0.87!10.23!TOPORS;;chr17:37934365..37934387,-!p2@IKZF3!0.87!6.38!IKZF3;;chr19:18392422..18392440,-!p1@JUND!0.86!915.67!JUND;;chr5:172483347..172483407,+!p1@C5orf41!0.86!49.82!CREBRF;;chr1:8585945..8586056,-!p3@RERE!0.86!21.95!RERE;;chr9:32550839..32550962,-!p3@TOPORS!0.86!16.16!TOPORS;;chr2:231084659..231084721,-!p1@SP110!0.85!150.96!SP110;;chr14:90085458..90085557,-!p1@FOXN3!0.85!67.03!FOXN3;;chr17:38256973..38256990,-!p5@NR1D1!0.85!14.53!NR1D1;;chr9:102584241..102584261,+!p4@NR4A3!0.85!9.64!NR4A3;;chr16:68119440..68119480,+!p4@NFATC3!0.84!10.08!NFATC3;;chrX:106960249..106960260,-!p5@TSC22D3!0.84!9.79!TSC22D3;;chr7:64126503..64126528,+!p1@ZNF107!0.83!44.04!ZNF107;;chr6:15249128..15249177,+!p4@JARID2!0.83!10.82!JARID2;;chr14:99738059..99738086,-!p2@BCL11B!0.82!5.63!BCL11B;;chr2:231090344..231090361,-!p3@SP110!0.82!5.63!SP110;;chr3:71542827..71542838,-!p53@FOXP1!0.82!5.63!FOXP1;;chr4:149365827..149365870,-!p5@NR3C2!0.82!5.63!NR3C2;;chr19:19932513..19932569,-!p1@ZNF506!0.81!110.62!ZNF506;;chr19:12273866..12273935,+!p1@ZNF136!0.81!52.20!ZNF136;;chr18:77160282..77160343,+!p2@NFATC1!0.81!36.63!NFATC1;;chr19:21512202..21512225,-!p1@ZNF708!0.81!30.40!ZNF708;;chr5:132299339..132299359,-!p4@AFF4!0.81!27.58!AFF4;;chr9:73028332..73028385,-!p3@KLF9!0.81!20.02!KLF9;;chr5:43065197..43065244,+!p5@ZNF131!0.81!11.12!ZNF131;;chr4:149363475..149363492,-!p2@NR3C2!0.81!5.49!NR3C2;;chr4:149366111..149366128,-!p7@NR3C2!0.81!5.49!NR3C2;;chr7:21467642..21467671,+!p2@SP4!0.80!12.90!SP4;;chr6:157098579..157098634,+!p4@ARID1B!0.80!12.60!ARID1B;;chr4:185395633..185395651,-!p2@IRF2!0.80!8.75!IRF2;;chr14:69262947..69262986,-!p3@ZFP36L1!0.80!6.52!ZFP36L1;;chr5:133477905..133477956,+!p5@TCF7!0.80!5.34!TCF7;;chr20:51589732..51589769,+!p3@TSHZ2!0.80!5.34!TSHZ2;;chr21:36421147..36421193,-!p10@RUNX1!0.80!5.34!RUNX1;;chr7:99097863..99097936,-!p1@ZNF394!0.79!56.05!ZNF394;;chr19:9546227..9546257,-!p2@ZNF266!0.79!29.06!ZNF266;;chr19:19843900..19843928,-!p1@ZNF14!0.79!28.03!ZNF14;;chr3:114866084..114866118,-!p2@ZBTB20!0.79!20.17!ZBTB20;;chr20:56195525..56195556,-!p2@ZBP1!0.79!5.19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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13223.11784-124B2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13223.11784-124B2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13223.11784-124B2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13223.11784-124B2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13223.11784-124B2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11784-124B2
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
 |is_obsolete=
 |library_id=CNhs13223
-|library_ids=CNhs13223
+|library_id_phase_based=2:CNhs13223
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11784
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11784
 |name=CD4+CD25-CD45RA+ naive conventional T cells, donor1
 |namespace=
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13223,LSID1005,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11784-124B2;search_select_hide=table117:FF:11784-124B2
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FF:11784-124B2: Difference between revisions

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Latest revision as of 18:20, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0