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{{f5samples
{{f5samples
|id=FF:11784-124B2
|DRA_sample_Accession=CAGE@SAMD00004701
|name=CD4+CD25-CD45RA+ naive conventional T cells, donor1
|accession_numbers=CAGE;DRX008190;DRR009062;DRZ000487;DRZ001872;DRZ011837;DRZ013222
|sample_id=11784
|ancestors_in_anatomy_facet=
|rna_tube_id=124B2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|rna_box=124
|rna_position=B2
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=3
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=blood
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=25
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.87
|rna_od260/280=2.01
|sample_cell_type=T cell
|sample_cell_line=
|sample_collaboration=Michael Rehli (University of Regensberg)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=2.8978
|rna_concentration=0.28978
|sample_note=
|profile_hcage=CNhs13223,LSID1005,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000624,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000805,CL:0000806,CL:0000807,CL:0000808,CL:0000809,CL:0000810,CL:0000813,CL:0000827,CL:0000837,CL:0000838,CL:0000893,CL:0000894,CL:0000895,CL:0000896,CL:0000897,CL:0000898,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420,CL:0002425,CL:0002427,CL:0002428,CL:0002429,CL:0002431,CL:0002432,CL:0002433,CL:0002436,CL:0002489
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000078,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0000974,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002050,UBERON:0002193,UBERON:0002342,UBERON:0002346,UBERON:0002368,UBERON:0002370,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002530,UBERON:0002532,UBERON:0003075,UBERON:0003104,UBERON:0003295,UBERON:0003351,UBERON:0003408,UBERON:0003929,UBERON:0004119,UBERON:0004120,UBERON:0004121,UBERON:0004177,UBERON:0004185,UBERON:0004807,UBERON:0004921,UBERON:0005057,UBERON:0005058,UBERON:0005291,UBERON:0005423,UBERON:0005428,UBERON:0005434,UBERON:0005562,UBERON:0005911,UBERON:0006562,UBERON:0006598,UBERON:0007026,UBERON:0007284,UBERON:0007690,UBERON:0009113,UBERON:0009142,UBERON:0009145
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
|comment=Previously: CD4-positiveCD25-CD45RA+ memory conventional T cells, donor1. TODO: full classification
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.40!250.75!TCF7;;chr4:109087445..109087463,-!p1@LEF1!2.33!212.79!LEF1;;chr3:63953435..63953499,+!p1@ATXN7!2.17!147.69!ATXN7;;chr6:91006518..91006570,-!p1@BACH2!2.00!219.61!BACH2;;chr7:50343634..50343717,+!p2@IKZF1!1.97!92.68!IKZF1;;chr5:133450365..133450444,+!p1@TCF7!1.95!384.95!TCF7;;chr3:71355163..71355209,-!p5@FOXP1!1.94!116.55!FOXP1;;chr3:71542615..71542644,-!p12@FOXP1!1.90!78.15!FOXP1;;chr2:192015701..192015743,-!p1@STAT4!1.86!97.72!STAT4;;chr4:109090075..109090095,-!p2@LEF1!1.83!66.73!LEF1;;chr3:18486354..18486377,-!p2@SATB1!1.79!75.03!SATB1;;chr19:16435625..16435682,+!p1@KLF2!1.78!1768.17!KLF2;;chr5:133451347..133451358,+!p3@TCF7!1.76!56.79!TCF7;;chr19:54058073..54058088,+!p1@ZNF331!1.74!53.38!ZNF331;;chrY:21906594..21906622,-!p1@KDM5D!1.71!50.86!KDM5D;;chr2:231090433..231090469,+!p1@SP140!1.65!43.45!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.63!55.16!STAT4;;chrX:106960285..106960299,-!p1@TSC22D3!1.62!1030.15!TSC22D3;;chr10:35484053..35484076,+!p1@CREM!1.61!96.68!CREM;;chr9:3525727..3525828,-!p2@RFX3!1.58!91.34!RFX3;;chr19:54041669..54041697,+!p2@ZNF331!1.58!37.22!ZNF331;;chr6:91006575..91006602,-!p2@BACH2!1.56!52.05!BACH2;;chr8:123793988..123794016,+!p1@ZHX2!1.50!52.49!ZHX2;;chr7:50343895..50343936,+!p5@IKZF1!1.50!30.55!IKZF1;;chr19:45971246..45971265,+!p1@FOSB!1.48!524.34!FOSB;;chr17:38497662..38497713,+!p4@RARA!1.48!33.96!RARA;;chr7:50344251..50344288,+!p3@IKZF1!1.48!29.36!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.47!75.77!AKNA;;chr4:109089573..109089585,-!p8@LEF1!1.47!28.77!LEF1;;chr2:97202991..97203043,+!p3@ARID5A!1.47!28.32!ARID5A;;chr3:18480217..18480239,-!p3@SATB1!1.46!27.88!SATB1;;chr19:12902289..12902307,+!p1@JUNB!1.44!5786.73!JUNB;;chr21:36421535..36421610,-!p2@RUNX1!1.44!91.79!RUNX1;;chr10:35416142..35416169,+!p3@CREM!1.41!63.91!CREM;;chr20:50159198..50159299,-!p1@NFATC2!1.40!35.00!NFATC2;;chr3:71542651..71542683,-!p22@FOXP1!1.40!24.02!FOXP1;;chr2:157189180..157189290,-!p1@NR4A2!1.38!117.29!NR4A2;;chr11:128392273..128392308,-!p2@ETS1!1.36!91.20!ETS1;;chr7:50348268..50348366,+!p4@IKZF1!1.36!21.80!IKZF1;;chr3:18487057..18487105,-!p4@SATB1!1.35!21.35!SATB1;;chr6:91006503..91006517,-!p3@BACH2!1.34!21.06!BACH2;;chr4:109089901..109089930,-!p3@LEF1!1.34!20.76!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.33!20.46!IKZF1;;chr3:71542684..71542720,-!p18@FOXP1!1.30!18.98!FOXP1;;chr19:19779619..19779670,+!p1@ZNF101!1.28!49.82!ZNF101;;chr19:45972701..45972774,+!p2@FOSB!1.28!24.62!FOSB;;chr20:51588873..51588953,+!p1@TSHZ2!1.28!23.58!TSHZ2;;chr14:75745523..75745537,+!p1@FOS!1.27!2037.31!FOS;;chr10:8096772..8096787,+!p2@GATA3!1.26!20.17!GATA3;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.25!92.53!ZNF10;;chr13:41593425..41593480,-!p1@ELF1!1.24!103.06!ELF1;;chr1:25256756..25256774,-!p1@RUNX3!1.24!30.55!RUNX3;;chr10:8096631..8096660,+!p1@GATA3!1.23!19.13!GATA3;;chr2:231090471..231090504,+!p2@SP140!1.23!16.01!SP140;;chr9:20620829..20620848,-!p7@MLLT3!1.23!16.01!MLLT3;;chrX:101186981..101187030,-!p1@ZMAT1!1.22!50.42!ZMAT1;;chr4:38665769..38665801,+!p2@KLF3!1.21!135.98!KLF3;;chr16:3313791..3313834,+!p2@ZNF263!1.20!32.62!ZNF263;;chr14:64970670..64970712,-!p3@ZBTB25!1.19!31.44!ZBTB25;;chr10:35484090..35484104,+!p6@CREM!1.19!14.53!CREM;;chr4:109086281..109086319,-!p9@LEF1!1.19!14.38!LEF1;;chr6:391743..391759,+!p1@IRF4!1.18!14.24!IRF4;;chr15:60884706..60884743,-!p1@RORA!1.17!71.03!RORA;;chr19:16435423..16435484,+!p5@KLF2!1.17!13.79!KLF2;;chr11:128392085..128392232,-!p1@ETS1!1.16!447.97!ETS1;;chr2:100759037..100759058,-!p2@AFF3!1.16!13.49!AFF3;;chr9:102584262..102584276,+!p1@NR4A3!1.15!29.51!NR4A3;;chr1:45805693..45805718,+!p3@TOE1!1.15!28.32!TOE1;;chr6:12009042..12009092,+!p6@HIVEP1!1.15!17.05!HIVEP1;;chr2:97202480..97202499,+!p1@ARID5A!1.14!129.16!ARID5A;;chr4:109088089..109088101,-!p11@LEF1!1.14!12.75!LEF1;;chr3:18466787..18466839,-!p1@SATB1!1.13!55.61!SATB1;;chr14:64971288..64971316,-!p2@ZBTB25!1.13!38.55!ZBTB25;;chr3:71353892..71353928,-!p31@FOXP1!1.12!12.31!FOXP1;;chr14:99738138..99738163,-!p1@BCL11B!1.12!12.31!BCL11B;;chr19:54041645..54041661,+!p5@ZNF331!1.12!12.31!ZNF331;;chr3:18480173..18480189,-!p6@SATB1!1.11!12.01!SATB1;;chr19:54040550..54040594,+!p20@ZNF331!1.11!11.86!ZNF331;;chrX:106960221..106960236,-!p3@TSC22D3!1.10!32.03!TSC22D3;;chr3:114819124..114819200,-!p3@ZBTB20!1.10!27.14!ZBTB20;;chr12:72056800..72056834,+!p1@THAP2!1.10!15.57!THAP2;;chr19:19729477..19729542,-!p1@PBX4!1.08!23.73!PBX4;;chr3:71179699..71179744,-!p2@FOXP1!1.07!81.71!FOXP1;;chr13:41240717..41240735,-!p2@FOXO1!1.07!73.40!FOXO1;;chr13:74707894..74707947,-!p6@KLF12!1.07!11.86!KLF12;;chr17:38020392..38020477,-!p1@IKZF3!1.07!10.82!IKZF3;;chr3:71542747..71542766,-!p34@FOXP1!1.07!10.68!FOXP1;;chr8:81397846..81397860,+!p3@ZBTB10!1.06!13.05!ZBTB10;;chr2:208394817..208394834,+!p3@CREB1!1.05!41.82!CREB1;;chr19:12444440..12444455,-!p1@ZNF563!1.05!17.94!ZNF563;;chr4:38665810..38665827,+!p1@KLF3!1.04!146.06!KLF3;;chr2:100759010..100759035,-!p1@AFF3!1.04!9.94!AFF3;;chr2:192015677..192015691,-!p3@STAT4!1.04!9.94!STAT4;;chr17:56565257..56565283,-!p2@HSF5!1.04!9.94!HSF5;;chr14:65569101..65569119,-!p3@MAX!1.03!31.29!MAX;;chr4:149363494..149363543,-!p1@NR3C2!1.03!9.64!NR3C2;;chr4:109089996..109090012,-!p5@LEF1!1.02!9.49!LEF1;;chr6:143266297..143266356,-!p1@HIVEP2!1.01!45.38!HIVEP2;;chr19:38085768..38085821,+!p1@ZNF540!1.01!14.09!ZNF540;;chr19:54041574..54041589,+!p6@ZNF331!1.01!9.19!ZNF331;;chr16:68119324..68119364,+!p1@NFATC3!1.00!40.93!NFATC3;;chr7:21467674..21467727,+!p1@SP4!1.00!36.33!SP4;;chr4:109088130..109088163,-!p13@LEF1!1.00!8.90!LEF1;;chr10:35485013..35485034,+!p15@CREM!1.00!8.90!CREM;;chr11:128563948..128564003,+!p1@FLI1!0.99!108.40!FLI1;;chr2:208031542..208031595,-!p2@KLF7!0.99!63.61!KLF7;;chr9:20621927..20621996,-!p3@MLLT3!0.99!15.13!MLLT3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.98!939.54!ZFP36L2;;chr11:67007548..67007610,+!p3@KDM2A!0.98!65.69!KDM2A;;chr9:20622444..20622468,-!p2@MLLT3!0.98!28.47!MLLT3;;chr10:35416125..35416138,+!p10@CREM!0.98!10.08!CREM;;chr10:35416223..35416234,+!p12@CREM!0.98!8.60!CREM;;chr2:157189617..157189667,-!p4@NR4A2!0.98!8.45!NR4A2;;chr4:109088940..109089037,-!p4@LEF1!0.97!8.30!LEF1;;chr13:41240737..41240787,-!p1@FOXO1!0.96!99.50!FOXO1;;chr3:39195075..39195088,-!p1@CSRNP1!0.96!51.90!CSRNP1;;chr2:148778973..148779035,+!p3@MBD5!0.96!21.65!MBD5;;chr9:114287433..114287513,+!p1@ZNF483!0.96!21.65!ZNF483;;chr19:16435523..16435619,+!p2@KLF2!0.96!11.42!KLF2;;chr15:60884747..60884774,-!p3@RORA!0.95!19.72!RORA;;chr17:38020516..38020544,-!p5@IKZF3!0.95!7.86!IKZF3;;chr10:35416172..35416184,+!p13@CREM!0.95!7.86!CREM;;chr4:109090054..109090073,-!p7@LEF1!0.94!7.71!LEF1;;chr20:51589835..51589848,+!p5@TSHZ2!0.94!7.71!TSHZ2;;chr3:63898321..63898396,+!p3@ATXN7!0.93!17.65!ATXN7;;chr17:38020481..38020506,-!p7@IKZF3!0.93!7.56!IKZF3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.92!398.15!NFKBIZ;;chr6:12008986..12009016,+!p3@HIVEP1!0.92!23.43!HIVEP1;;chr16:89787937..89787971,+!p1@ZNF276!0.92!19.43!ZNF276;;chr3:23986824..23986848,+!p2@NR1D2!0.91!41.97!NR1D2;;chrX:106960180..106960197,-!p2@TSC22D3!0.91!28.62!TSC22D3;;chr9:3525867..3525902,-!p3@RFX3!0.91!25.36!RFX3;;chr14:75988771..75988826,+!p1@BATF!0.91!9.64!BATF;;chr8:41909982..41910009,-!p2@KAT6A!0.91!8.16!KAT6A;;chr14:64971893..64971928,-!p8@ZBTB25!0.91!7.12!ZBTB25;;chr19:49140609..49140643,-!p1@DBP!0.90!41.08!DBP;;chr19:52674696..52674758,-!p1@ZNF836!0.90!21.20!ZNF836;;chr9:20622478..20622525,-!p1@MLLT3!0.89!56.05!MLLT3;;chr18:77155922..77155939,+!p1@NFATC1!0.89!19.43!NFATC1;;chr11:128392309..128392350,-!p3@ETS1!0.89!16.76!ETS1;;chr19:12721790..12721810,+!p2@ZNF791!0.88!18.83!ZNF791;;chr19:54041603..54041615,+!p10@ZNF331!0.88!6.67!ZNF331;;chrY:2803415..2803468,+!p1@ZFY!0.88!6.52!ZFY;;chr15:31619326..31619390,+!p2@KLF13!0.87!78.15!KLF13;;chr19:20748574..20748599,-!p1@ZNF737!0.87!40.63!ZNF737;;chr2:178128250..178128293,-!p6@NFE2L2!0.87!16.90!NFE2L2;;chr9:32550965..32551031,-!p4@TOPORS!0.87!10.23!TOPORS;;chr17:37934365..37934387,-!p2@IKZF3!0.87!6.38!IKZF3;;chr19:18392422..18392440,-!p1@JUND!0.86!915.67!JUND;;chr5:172483347..172483407,+!p1@C5orf41!0.86!49.82!CREBRF;;chr1:8585945..8586056,-!p3@RERE!0.86!21.95!RERE;;chr9:32550839..32550962,-!p3@TOPORS!0.86!16.16!TOPORS;;chr2:231084659..231084721,-!p1@SP110!0.85!150.96!SP110;;chr14:90085458..90085557,-!p1@FOXN3!0.85!67.03!FOXN3;;chr17:38256973..38256990,-!p5@NR1D1!0.85!14.53!NR1D1;;chr9:102584241..102584261,+!p4@NR4A3!0.85!9.64!NR4A3;;chr16:68119440..68119480,+!p4@NFATC3!0.84!10.08!NFATC3;;chrX:106960249..106960260,-!p5@TSC22D3!0.84!9.79!TSC22D3;;chr7:64126503..64126528,+!p1@ZNF107!0.83!44.04!ZNF107;;chr6:15249128..15249177,+!p4@JARID2!0.83!10.82!JARID2;;chr14:99738059..99738086,-!p2@BCL11B!0.82!5.63!BCL11B;;chr2:231090344..231090361,-!p3@SP110!0.82!5.63!SP110;;chr3:71542827..71542838,-!p53@FOXP1!0.82!5.63!FOXP1;;chr4:149365827..149365870,-!p5@NR3C2!0.82!5.63!NR3C2;;chr19:19932513..19932569,-!p1@ZNF506!0.81!110.62!ZNF506;;chr19:12273866..12273935,+!p1@ZNF136!0.81!52.20!ZNF136;;chr18:77160282..77160343,+!p2@NFATC1!0.81!36.63!NFATC1;;chr19:21512202..21512225,-!p1@ZNF708!0.81!30.40!ZNF708;;chr5:132299339..132299359,-!p4@AFF4!0.81!27.58!AFF4;;chr9:73028332..73028385,-!p3@KLF9!0.81!20.02!KLF9;;chr5:43065197..43065244,+!p5@ZNF131!0.81!11.12!ZNF131;;chr4:149363475..149363492,-!p2@NR3C2!0.81!5.49!NR3C2;;chr4:149366111..149366128,-!p7@NR3C2!0.81!5.49!NR3C2;;chr7:21467642..21467671,+!p2@SP4!0.80!12.90!SP4;;chr6:157098579..157098634,+!p4@ARID1B!0.80!12.60!ARID1B;;chr4:185395633..185395651,-!p2@IRF2!0.80!8.75!IRF2;;chr14:69262947..69262986,-!p3@ZFP36L1!0.80!6.52!ZFP36L1;;chr5:133477905..133477956,+!p5@TCF7!0.80!5.34!TCF7;;chr20:51589732..51589769,+!p3@TSHZ2!0.80!5.34!TSHZ2;;chr21:36421147..36421193,-!p10@RUNX1!0.80!5.34!RUNX1;;chr7:99097863..99097936,-!p1@ZNF394!0.79!56.05!ZNF394;;chr19:9546227..9546257,-!p2@ZNF266!0.79!29.06!ZNF266;;chr19:19843900..19843928,-!p1@ZNF14!0.79!28.03!ZNF14;;chr3:114866084..114866118,-!p2@ZBTB20!0.79!20.17!ZBTB20;;chr20:56195525..56195556,-!p2@ZBP1!0.79!5.19!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=Previously: CD4-positiveCD25-CD45RA+ memory conventional T cells, donor1. TODO: full classification
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13223.11784-124B2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13223.11784-124B2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13223.11784-124B2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13223.11784-124B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor1.CNhs13223.11784-124B2.hg38.nobarcode.ctss.bed.gz
|id=FF:11784-124B2
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|library_id=CNhs13223
|library_id_phase_based=2:CNhs13223
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11784
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11784
|name=CD4+CD25-CD45RA+ naive conventional T cells, donor1
|namespace=
|namespace=
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs13223,LSID1005,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=124
|rna_catalog_number=
|rna_concentration=0.28978
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=3
|rna_od260/230=1.87
|rna_od260/280=2.01
|rna_position=B2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=124B2
|rna_weight_ug=2.8978
|sample_age=25
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=T cell
|sample_collaboration=Michael Rehli (University of Regensberg)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.29190026880082e-231!GO:0043227;membrane-bound organelle;2.19289265337392e-210!GO:0043231;intracellular membrane-bound organelle;6.22245496781982e-210!GO:0043226;organelle;9.31100272843428e-197!GO:0043229;intracellular organelle;5.1995328622195e-196!GO:0005634;nucleus;5.45205713986802e-124!GO:0005737;cytoplasm;4.03902298392231e-121!GO:0044422;organelle part;7.96721577373593e-112!GO:0043170;macromolecule metabolic process;1.3845045459533e-111!GO:0044446;intracellular organelle part;3.26184127237829e-110!GO:0044237;cellular metabolic process;1.2181784577484e-108!GO:0044238;primary metabolic process;7.1885710874449e-106!GO:0032991;macromolecular complex;1.95248627044934e-89!GO:0030529;ribonucleoprotein complex;7.11816224066625e-89!GO:0003723;RNA binding;1.25695210774805e-87!GO:0044428;nuclear part;2.15939689402338e-84!GO:0043283;biopolymer metabolic process;2.48088384545251e-84!GO:0044444;cytoplasmic part;2.21007328253193e-82!GO:0010467;gene expression;4.79665953431321e-76!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.16080788573515e-70!GO:0043233;organelle lumen;1.72663896860803e-69!GO:0031974;membrane-enclosed lumen;1.72663896860803e-69!GO:0006396;RNA processing;3.25356412125103e-59!GO:0003676;nucleic acid binding;6.1573510419521e-58!GO:0031981;nuclear lumen;1.18454700300009e-52!GO:0005739;mitochondrion;2.09692440544083e-50!GO:0006412;translation;1.90516970179874e-49!GO:0005840;ribosome;3.73822776351693e-48!GO:0016071;mRNA metabolic process;7.76152543132407e-48!GO:0019538;protein metabolic process;1.55364430132315e-46!GO:0016070;RNA metabolic process;9.32832193117964e-46!GO:0033036;macromolecule localization;2.53532519885113e-45!GO:0044267;cellular protein metabolic process;3.38217581390047e-45!GO:0005515;protein binding;1.40620006114473e-44!GO:0044260;cellular macromolecule metabolic process;2.35690678037836e-44!GO:0015031;protein transport;4.60975940128755e-43!GO:0008380;RNA splicing;2.85184958952774e-42!GO:0003735;structural constituent of ribosome;7.13865312375418e-42!GO:0043234;protein complex;1.01243256087696e-41!GO:0008104;protein localization;7.6907524896049e-41!GO:0045184;establishment of protein localization;1.09616791489769e-40!GO:0006397;mRNA processing;1.66523659128583e-40!GO:0033279;ribosomal subunit;2.07611690362918e-37!GO:0009059;macromolecule biosynthetic process;2.90058139030173e-37!GO:0044429;mitochondrial part;1.69547820919763e-35!GO:0031090;organelle membrane;7.49883800621405e-35!GO:0031967;organelle envelope;1.01192403649351e-34!GO:0031975;envelope;2.20251183600476e-34!GO:0005654;nucleoplasm;1.44637572660981e-33!GO:0006259;DNA metabolic process;7.70882602848167e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.52571173393414e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.50373366550331e-31!GO:0005681;spliceosome;2.29837030716203e-31!GO:0005829;cytosol;2.24199239749223e-30!GO:0046907;intracellular transport;3.64597802855715e-30!GO:0006886;intracellular protein transport;1.41449096208114e-29!GO:0016043;cellular component organization and biogenesis;1.12296124031172e-28!GO:0065003;macromolecular complex assembly;2.77012550335053e-28!GO:0044249;cellular biosynthetic process;5.11799881296874e-28!GO:0009058;biosynthetic process;1.28225629735842e-27!GO:0044451;nucleoplasm part;5.71631309347233e-27!GO:0044445;cytosolic part;6.26259048848593e-27!GO:0000166;nucleotide binding;7.48311917470091e-27!GO:0006512;ubiquitin cycle;2.2366602617269e-26!GO:0022607;cellular component assembly;2.07642081371518e-25!GO:0006996;organelle organization and biogenesis;1.58796898451009e-23!GO:0005740;mitochondrial envelope;4.35383406347113e-22!GO:0031966;mitochondrial membrane;1.26386275521021e-21!GO:0043412;biopolymer modification;3.38191607574631e-21!GO:0019866;organelle inner membrane;7.60670982109426e-21!GO:0016874;ligase activity;1.10926329927366e-20!GO:0005730;nucleolus;1.81461283742952e-20!GO:0051641;cellular localization;2.0481157333023e-20!GO:0022618;protein-RNA complex assembly;2.16281587781048e-20!GO:0015935;small ribosomal subunit;4.75665871202878e-20!GO:0051649;establishment of cellular localization;6.25250395957742e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.79362744332741e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.04790060248057e-19!GO:0016462;pyrophosphatase activity;1.06927342525433e-19!GO:0017111;nucleoside-triphosphatase activity;3.18203129335875e-19!GO:0005743;mitochondrial inner membrane;7.57115706525781e-19!GO:0044265;cellular macromolecule catabolic process;9.37822153496559e-19!GO:0016604;nuclear body;1.01549828720407e-18!GO:0006464;protein modification process;2.1733827142054e-18!GO:0015934;large ribosomal subunit;2.29119800003732e-18!GO:0032553;ribonucleotide binding;3.05521453789027e-18!GO:0032555;purine ribonucleotide binding;3.05521453789027e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;4.88956143293277e-18!GO:0043228;non-membrane-bound organelle;5.03129187510586e-18!GO:0043232;intracellular non-membrane-bound organelle;5.03129187510586e-18!GO:0019941;modification-dependent protein catabolic process;5.58808874196131e-18!GO:0043632;modification-dependent macromolecule catabolic process;5.58808874196131e-18!GO:0006511;ubiquitin-dependent protein catabolic process;9.1524997501093e-18!GO:0044257;cellular protein catabolic process;1.06137731696629e-17!GO:0008135;translation factor activity, nucleic acid binding;1.14659312992219e-17!GO:0017076;purine nucleotide binding;1.45510665223269e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.5028909925729e-17!GO:0043285;biopolymer catabolic process;1.88453996415909e-17!GO:0043687;post-translational protein modification;2.20487417463041e-17!GO:0006119;oxidative phosphorylation;3.28876504674242e-17!GO:0006605;protein targeting;3.68463378994268e-17!GO:0051276;chromosome organization and biogenesis;5.14495330728058e-17!GO:0006323;DNA packaging;8.12412030868934e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.39569957333276e-17!GO:0019222;regulation of metabolic process;1.11772125079991e-16!GO:0050794;regulation of cellular process;1.45446968046564e-16!GO:0006974;response to DNA damage stimulus;1.87493314104914e-16!GO:0044455;mitochondrial membrane part;2.59203727009983e-16!GO:0008134;transcription factor binding;3.81092823617088e-16!GO:0006913;nucleocytoplasmic transport;4.58959571969991e-16!GO:0031980;mitochondrial lumen;6.90285454810605e-16!GO:0005759;mitochondrial matrix;6.90285454810605e-16!GO:0051169;nuclear transport;8.43918283708239e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.7037601126034e-15!GO:0016607;nuclear speck;1.92122884647687e-15!GO:0009057;macromolecule catabolic process;5.11282267840896e-15!GO:0005524;ATP binding;5.35030535929692e-15!GO:0006350;transcription;5.59215281864876e-15!GO:0031323;regulation of cellular metabolic process;7.63921031009141e-15!GO:0016887;ATPase activity;8.99590311792479e-15!GO:0006457;protein folding;1.4357761963594e-14!GO:0032559;adenyl ribonucleotide binding;1.65121441976527e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.69747484894456e-14!GO:0000375;RNA splicing, via transesterification reactions;1.69747484894456e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.69747484894456e-14!GO:0042623;ATPase activity, coupled;2.42653094035894e-14!GO:0006281;DNA repair;2.80941122020043e-14!GO:0004386;helicase activity;5.39746913615433e-14!GO:0008270;zinc ion binding;6.21248470878201e-14!GO:0030554;adenyl nucleotide binding;9.01410478273005e-14!GO:0012501;programmed cell death;1.1440285148632e-13!GO:0006915;apoptosis;1.24661732350792e-13!GO:0030163;protein catabolic process;1.80152690849925e-13!GO:0003743;translation initiation factor activity;1.83845441060271e-13!GO:0005635;nuclear envelope;2.85466937612507e-13!GO:0010468;regulation of gene expression;2.98935043803851e-13!GO:0008219;cell death;3.27417191593228e-13!GO:0016265;death;3.27417191593228e-13!GO:0006413;translational initiation;3.98931763164478e-13!GO:0012505;endomembrane system;4.9977259049829e-13!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.13490720904734e-13!GO:0042254;ribosome biogenesis and assembly;8.60111755795751e-13!GO:0031965;nuclear membrane;8.91387002892174e-13!GO:0005746;mitochondrial respiratory chain;1.20678202492883e-12!GO:0016568;chromatin modification;2.10768241949416e-12!GO:0008026;ATP-dependent helicase activity;2.94521782177809e-12!GO:0032774;RNA biosynthetic process;3.16493993716704e-12!GO:0000502;proteasome complex (sensu Eukaryota);4.40061412691059e-12!GO:0006351;transcription, DNA-dependent;4.4300583639057e-12!GO:0044453;nuclear membrane part;6.15119448744535e-12!GO:0005694;chromosome;6.50646925013651e-12!GO:0050657;nucleic acid transport;6.60174504603821e-12!GO:0051236;establishment of RNA localization;6.60174504603821e-12!GO:0050658;RNA transport;6.60174504603821e-12!GO:0006403;RNA localization;7.20432534401323e-12!GO:0044248;cellular catabolic process;7.92870697943795e-12!GO:0007049;cell cycle;1.21281661092234e-11!GO:0050136;NADH dehydrogenase (quinone) activity;1.797389885537e-11!GO:0003954;NADH dehydrogenase activity;1.797389885537e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.797389885537e-11!GO:0017038;protein import;1.80363711946147e-11!GO:0008639;small protein conjugating enzyme activity;2.24393554112955e-11!GO:0045449;regulation of transcription;2.66053202366664e-11!GO:0065004;protein-DNA complex assembly;2.78852400790655e-11!GO:0004842;ubiquitin-protein ligase activity;2.98592122509778e-11!GO:0006333;chromatin assembly or disassembly;4.81760047824659e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.47205002205243e-11!GO:0006446;regulation of translational initiation;5.80806884495181e-11!GO:0005643;nuclear pore;6.09980127200784e-11!GO:0051082;unfolded protein binding;6.69457284996825e-11!GO:0050789;regulation of biological process;6.79495741207544e-11!GO:0019787;small conjugating protein ligase activity;8.91051592238231e-11!GO:0048193;Golgi vesicle transport;9.79363946078575e-11!GO:0003712;transcription cofactor activity;1.99065371941661e-10!GO:0005761;mitochondrial ribosome;2.37589397035475e-10!GO:0000313;organellar ribosome;2.37589397035475e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.49729930355512e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.63559031325831e-10!GO:0042773;ATP synthesis coupled electron transport;3.63559031325831e-10!GO:0003677;DNA binding;4.17442610910971e-10!GO:0051028;mRNA transport;4.33473006080119e-10!GO:0006355;regulation of transcription, DNA-dependent;4.96506950635928e-10!GO:0044427;chromosomal part;5.9589766309559e-10!GO:0009719;response to endogenous stimulus;8.86647786744305e-10!GO:0046914;transition metal ion binding;8.95920836326741e-10!GO:0030964;NADH dehydrogenase complex (quinone);9.71291536429924e-10!GO:0045271;respiratory chain complex I;9.71291536429924e-10!GO:0005747;mitochondrial respiratory chain complex I;9.71291536429924e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.0421134341561e-09!GO:0006399;tRNA metabolic process;1.26325801789807e-09!GO:0043566;structure-specific DNA binding;1.52090253716505e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.20573047996756e-09!GO:0016072;rRNA metabolic process;2.83077176742729e-09!GO:0042981;regulation of apoptosis;3.30172400066916e-09!GO:0006364;rRNA processing;3.35160904019444e-09!GO:0065002;intracellular protein transport across a membrane;3.54112955643564e-09!GO:0043067;regulation of programmed cell death;3.77793699751862e-09!GO:0051186;cofactor metabolic process;4.51905828599725e-09!GO:0048770;pigment granule;4.92018910585673e-09!GO:0042470;melanosome;4.92018910585673e-09!GO:0006793;phosphorus metabolic process;5.86098097558536e-09!GO:0006796;phosphate metabolic process;5.86098097558536e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.19795632145391e-08!GO:0046930;pore complex;1.21139599032827e-08!GO:0003697;single-stranded DNA binding;1.2382995685402e-08!GO:0016881;acid-amino acid ligase activity;1.3001723225624e-08!GO:0005794;Golgi apparatus;1.3591208250312e-08!GO:0003713;transcription coactivator activity;1.66376650649186e-08!GO:0008565;protein transporter activity;2.33139745816331e-08!GO:0009259;ribonucleotide metabolic process;2.44279811592772e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.48783904732722e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.52139326312291e-08!GO:0019829;cation-transporting ATPase activity;2.75933440025162e-08!GO:0000785;chromatin;2.90932252626964e-08!GO:0022402;cell cycle process;3.06382527747982e-08!GO:0032446;protein modification by small protein conjugation;3.10140418243409e-08!GO:0009260;ribonucleotide biosynthetic process;3.98038152839724e-08!GO:0051170;nuclear import;4.44029350350248e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.13555845850806e-08!GO:0016567;protein ubiquitination;6.8016699853433e-08!GO:0006366;transcription from RNA polymerase II promoter;6.93326731172929e-08!GO:0006606;protein import into nucleus;7.69591748685357e-08!GO:0006164;purine nucleotide biosynthetic process;8.48649016433403e-08!GO:0051726;regulation of cell cycle;9.59134936218216e-08!GO:0000151;ubiquitin ligase complex;1.0368740978596e-07!GO:0016310;phosphorylation;1.38382784823548e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.42247243716995e-07!GO:0000074;regulation of progression through cell cycle;1.47564339249496e-07!GO:0016787;hydrolase activity;1.49687245014524e-07!GO:0006163;purine nucleotide metabolic process;1.59364342087948e-07!GO:0006334;nucleosome assembly;1.59585307430758e-07!GO:0009060;aerobic respiration;2.14753486759268e-07!GO:0016779;nucleotidyltransferase activity;2.35616237634402e-07!GO:0016563;transcription activator activity;2.39500809532783e-07!GO:0031497;chromatin assembly;2.42450079543358e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.62685540622602e-07!GO:0009150;purine ribonucleotide metabolic process;2.87178138971834e-07!GO:0016740;transferase activity;3.47081226299505e-07!GO:0051168;nuclear export;3.53267938822802e-07!GO:0016192;vesicle-mediated transport;3.61960438784153e-07!GO:0006260;DNA replication;3.75237157074858e-07!GO:0006732;coenzyme metabolic process;4.16985760322523e-07!GO:0003724;RNA helicase activity;7.04663458528982e-07!GO:0005768;endosome;8.13513698939547e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.76835324930593e-07!GO:0045333;cellular respiration;9.89012355757468e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.93592424307852e-07!GO:0015986;ATP synthesis coupled proton transport;1.19258320500622e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.19258320500622e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.3161547460618e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.3161547460618e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.3161547460618e-06!GO:0000245;spliceosome assembly;1.44209494732572e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.00767363043198e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.21109518254177e-06!GO:0044432;endoplasmic reticulum part;2.2286351214576e-06!GO:0004298;threonine endopeptidase activity;2.52758776481555e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.75650372383934e-06!GO:0043038;amino acid activation;3.31844927278747e-06!GO:0006418;tRNA aminoacylation for protein translation;3.31844927278747e-06!GO:0043039;tRNA aminoacylation;3.31844927278747e-06!GO:0065007;biological regulation;3.72427363746334e-06!GO:0009056;catabolic process;3.97048997849566e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.72973913365208e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.72973913365208e-06!GO:0006754;ATP biosynthetic process;7.21417923622136e-06!GO:0006753;nucleoside phosphate metabolic process;7.21417923622136e-06!GO:0045259;proton-transporting ATP synthase complex;7.31588948627967e-06!GO:0051188;cofactor biosynthetic process;7.79650955157489e-06!GO:0016564;transcription repressor activity;8.63311001396321e-06!GO:0009199;ribonucleoside triphosphate metabolic process;8.9812750892336e-06!GO:0009142;nucleoside triphosphate biosynthetic process;9.5342048791972e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.5342048791972e-06!GO:0046034;ATP metabolic process;9.83474360260622e-06!GO:0006401;RNA catabolic process;1.03439232681305e-05!GO:0007005;mitochondrion organization and biogenesis;1.05664325346779e-05!GO:0005789;endoplasmic reticulum membrane;1.10836578255355e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.10836578255355e-05!GO:0009141;nucleoside triphosphate metabolic process;1.11959751231257e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.21584493319114e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.23592556554263e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.23592556554263e-05!GO:0045786;negative regulation of progression through cell cycle;1.26233542284592e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.32023256802447e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.32023256802447e-05!GO:0019899;enzyme binding;1.40969010194621e-05!GO:0007243;protein kinase cascade;1.42125815449507e-05!GO:0048523;negative regulation of cellular process;1.44133383244189e-05!GO:0051246;regulation of protein metabolic process;1.48165465667634e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.55541603774855e-05!GO:0015399;primary active transmembrane transporter activity;1.55541603774855e-05!GO:0006916;anti-apoptosis;1.65624083384644e-05!GO:0006613;cotranslational protein targeting to membrane;1.8104107493351e-05!GO:0006099;tricarboxylic acid cycle;1.85357096173881e-05!GO:0046356;acetyl-CoA catabolic process;1.85357096173881e-05!GO:0003690;double-stranded DNA binding;2.08701938431153e-05!GO:0005783;endoplasmic reticulum;2.09229294580729e-05!GO:0008186;RNA-dependent ATPase activity;2.15235476566287e-05!GO:0006402;mRNA catabolic process;2.31716235714596e-05!GO:0005813;centrosome;2.59962622469817e-05!GO:0005525;GTP binding;2.98790688907997e-05!GO:0031324;negative regulation of cellular metabolic process;3.12479749051274e-05!GO:0016363;nuclear matrix;3.74766674502639e-05!GO:0048475;coated membrane;4.03621976877978e-05!GO:0030117;membrane coat;4.03621976877978e-05!GO:0006084;acetyl-CoA metabolic process;4.10683712939086e-05!GO:0043069;negative regulation of programmed cell death;4.54615638879921e-05!GO:0030120;vesicle coat;4.54615638879921e-05!GO:0030662;coated vesicle membrane;4.54615638879921e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.5661906159889e-05!GO:0009108;coenzyme biosynthetic process;5.47828663956231e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.72825151905903e-05!GO:0065009;regulation of a molecular function;6.3162339380349e-05!GO:0043066;negative regulation of apoptosis;6.6605906165698e-05!GO:0004004;ATP-dependent RNA helicase activity;7.12072961951664e-05!GO:0008234;cysteine-type peptidase activity;7.58748890909439e-05!GO:0006461;protein complex assembly;7.93026259553177e-05!GO:0005793;ER-Golgi intermediate compartment;8.09457956050412e-05!GO:0043623;cellular protein complex assembly;8.16457054984073e-05!GO:0016251;general RNA polymerase II transcription factor activity;8.44930082080701e-05!GO:0005815;microtubule organizing center;0.00010372162387759!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00010538759558989!GO:0003899;DNA-directed RNA polymerase activity;0.000107027712176388!GO:0004674;protein serine/threonine kinase activity;0.000107036737915752!GO:0051427;hormone receptor binding;0.000108729956428919!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000109962229442191!GO:0009109;coenzyme catabolic process;0.000122573535243098!GO:0006310;DNA recombination;0.000124047813046091!GO:0044431;Golgi apparatus part;0.000124414787736874!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000126357574905342!GO:0009892;negative regulation of metabolic process;0.000139961425674452!GO:0006612;protein targeting to membrane;0.000150061397267367!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000152611087168657!GO:0009055;electron carrier activity;0.000168105209938214!GO:0035257;nuclear hormone receptor binding;0.000191316917584499!GO:0006261;DNA-dependent DNA replication;0.000191720877802112!GO:0005667;transcription factor complex;0.000191720877802112!GO:0008033;tRNA processing;0.000195962142102979!GO:0048519;negative regulation of biological process;0.000199547320465332!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000210164287250206!GO:0043492;ATPase activity, coupled to movement of substances;0.000212234489226438!GO:0016481;negative regulation of transcription;0.000220261322942648!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000220543015419418!GO:0051187;cofactor catabolic process;0.000222416099611471!GO:0043021;ribonucleoprotein binding;0.000253957501332387!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00026326943116487!GO:0003729;mRNA binding;0.000263812749515583!GO:0003924;GTPase activity;0.000265925769655721!GO:0006352;transcription initiation;0.000276995321240911!GO:0032561;guanyl ribonucleotide binding;0.000307482412852915!GO:0019001;guanyl nucleotide binding;0.000307482412852915!GO:0006752;group transfer coenzyme metabolic process;0.000326131477490943!GO:0008654;phospholipid biosynthetic process;0.000332054820364751!GO:0006917;induction of apoptosis;0.000367571641148885!GO:0012502;induction of programmed cell death;0.000430294236022891!GO:0005885;Arp2/3 protein complex;0.000455093067365292!GO:0060090;molecular adaptor activity;0.000471631845950538!GO:0006891;intra-Golgi vesicle-mediated transport;0.000488309361882422!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000495596882443244!GO:0016741;transferase activity, transferring one-carbon groups;0.000496957474942983!GO:0008168;methyltransferase activity;0.00050139729451065!GO:0006405;RNA export from nucleus;0.000501891036544673!GO:0030384;phosphoinositide metabolic process;0.000557770074593533!GO:0005769;early endosome;0.0005871261286992!GO:0006383;transcription from RNA polymerase III promoter;0.000639902267574709!GO:0044440;endosomal part;0.000640000415308851!GO:0010008;endosome membrane;0.000640000415308851!GO:0005773;vacuole;0.000642963141255887!GO:0000786;nucleosome;0.000684579259196541!GO:0043065;positive regulation of apoptosis;0.000699076701463246!GO:0000278;mitotic cell cycle;0.000785878177738555!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000791360512516306!GO:0006611;protein export from nucleus;0.000794137036358331!GO:0005762;mitochondrial large ribosomal subunit;0.000804490246287052!GO:0000315;organellar large ribosomal subunit;0.000804490246287052!GO:0043068;positive regulation of programmed cell death;0.000817263710654075!GO:0007242;intracellular signaling cascade;0.000839422854304576!GO:0004527;exonuclease activity;0.000846978187068391!GO:0019783;small conjugating protein-specific protease activity;0.000935219019122769!GO:0044452;nucleolar part;0.000935219019122769!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00102849048857863!GO:0005770;late endosome;0.00102947008232059!GO:0043681;protein import into mitochondrion;0.00103597363927711!GO:0051539;4 iron, 4 sulfur cluster binding;0.00103597363927711!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00111614701047786!GO:0006607;NLS-bearing substrate import into nucleus;0.00113443840203258!GO:0046489;phosphoinositide biosynthetic process;0.00119353263659184!GO:0004518;nuclease activity;0.00124423866936867!GO:0000314;organellar small ribosomal subunit;0.00131154182316794!GO:0005763;mitochondrial small ribosomal subunit;0.00131154182316794!GO:0000139;Golgi membrane;0.00133526296034643!GO:0004843;ubiquitin-specific protease activity;0.00133737078764045!GO:0000323;lytic vacuole;0.00146249425793373!GO:0005764;lysosome;0.00146249425793373!GO:0009117;nucleotide metabolic process;0.00156830968707717!GO:0031072;heat shock protein binding;0.0016252127529596!GO:0007264;small GTPase mediated signal transduction;0.00165503536745147!GO:0032259;methylation;0.00168402642482325!GO:0004221;ubiquitin thiolesterase activity;0.00184431192602055!GO:0006818;hydrogen transport;0.00210350901737933!GO:0003678;DNA helicase activity;0.00213888642960917!GO:0009615;response to virus;0.00220788315392134!GO:0006650;glycerophospholipid metabolic process;0.00220955161352061!GO:0006417;regulation of translation;0.00220955161352061!GO:0015992;proton transport;0.00224091528492038!GO:0031625;ubiquitin protein ligase binding;0.00224375791092834!GO:0005798;Golgi-associated vesicle;0.00225610459513174!GO:0007265;Ras protein signal transduction;0.00249575238818062!GO:0019867;outer membrane;0.00261029290480542!GO:0043414;biopolymer methylation;0.00261225828407666!GO:0019843;rRNA binding;0.00273039366446563!GO:0051087;chaperone binding;0.00275556044696504!GO:0006414;translational elongation;0.00294337247713491!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00294337247713491!GO:0048500;signal recognition particle;0.00300521922782976!GO:0006338;chromatin remodeling;0.00313448343956868!GO:0003746;translation elongation factor activity;0.00320729106713975!GO:0007006;mitochondrial membrane organization and biogenesis;0.0032997789033522!GO:0006302;double-strand break repair;0.00330524380114545!GO:0016197;endosome transport;0.0034121791836087!GO:0005669;transcription factor TFIID complex;0.00348324496383964!GO:0031968;organelle outer membrane;0.00353936842341615!GO:0005741;mitochondrial outer membrane;0.00357062576800447!GO:0051252;regulation of RNA metabolic process;0.00358256791903144!GO:0046966;thyroid hormone receptor binding;0.00367045858998935!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00367045858998935!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00367045858998935!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00367045858998935!GO:0006289;nucleotide-excision repair;0.00374345197997763!GO:0030518;steroid hormone receptor signaling pathway;0.00379150460598618!GO:0046474;glycerophospholipid biosynthetic process;0.00379943187508228!GO:0008312;7S RNA binding;0.00379943187508228!GO:0003714;transcription corepressor activity;0.00388050019974499!GO:0031326;regulation of cellular biosynthetic process;0.00388408939347793!GO:0016584;nucleosome positioning;0.00414522916671371!GO:0005684;U2-dependent spliceosome;0.00460422352848866!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00466725869399932!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0047251161276924!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0047251161276924!GO:0045047;protein targeting to ER;0.0047251161276924!GO:0051540;metal cluster binding;0.00474536477888353!GO:0051536;iron-sulfur cluster binding;0.00474536477888353!GO:0016790;thiolester hydrolase activity;0.00483737786038934!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00518731007219112!GO:0005083;small GTPase regulator activity;0.0055341159362861!GO:0008632;apoptotic program;0.00590688209915666!GO:0004532;exoribonuclease activity;0.00593972860896376!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00593972860896376!GO:0043488;regulation of mRNA stability;0.00593972860896376!GO:0043487;regulation of RNA stability;0.00593972860896376!GO:0015631;tubulin binding;0.00610532066407522!GO:0032200;telomere organization and biogenesis;0.00619469659534657!GO:0000723;telomere maintenance;0.00619469659534657!GO:0030521;androgen receptor signaling pathway;0.00620995270458559!GO:0030695;GTPase regulator activity;0.00621969204955077!GO:0042101;T cell receptor complex;0.00644830367654531!GO:0016788;hydrolase activity, acting on ester bonds;0.00676116473875492!GO:0003684;damaged DNA binding;0.00701536254812876!GO:0022890;inorganic cation transmembrane transporter activity;0.00702928985181463!GO:0047485;protein N-terminus binding;0.00732894826261675!GO:0040029;regulation of gene expression, epigenetic;0.00761214099004071!GO:0030880;RNA polymerase complex;0.00789404653580265!GO:0030258;lipid modification;0.00805179630465131!GO:0003711;transcription elongation regulator activity;0.00806998409555637!GO:0051052;regulation of DNA metabolic process;0.00830507965371963!GO:0000209;protein polyubiquitination;0.00860811316478638!GO:0005070;SH3/SH2 adaptor activity;0.00866536084557072!GO:0003682;chromatin binding;0.00878919635304107!GO:0003725;double-stranded RNA binding;0.00889209902668899!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00889915883642725!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00900015075815072!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00900015075815072!GO:0030522;intracellular receptor-mediated signaling pathway;0.00942056237102712!GO:0008624;induction of apoptosis by extracellular signals;0.00951468368972698!GO:0051301;cell division;0.00960481237323795!GO:0030118;clathrin coat;0.00962249313030515!GO:0006839;mitochondrial transport;0.00964958701392004!GO:0045892;negative regulation of transcription, DNA-dependent;0.00979588899552414!GO:0015630;microtubule cytoskeleton;0.00987366478459846!GO:0008408;3'-5' exonuclease activity;0.0104610724974646!GO:0005637;nuclear inner membrane;0.0106676346562211!GO:0009116;nucleoside metabolic process;0.0107627071922726!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0114351136066426!GO:0008022;protein C-terminus binding;0.0114604191775817!GO:0000781;chromosome, telomeric region;0.0114604191775817!GO:0005774;vacuolar membrane;0.0114765884356967!GO:0006626;protein targeting to mitochondrion;0.0116964263215386!GO:0005657;replication fork;0.0121581375270899!GO:0051789;response to protein stimulus;0.0123698503649079!GO:0006986;response to unfolded protein;0.0123698503649079!GO:0030658;transport vesicle membrane;0.012400295632711!GO:0031461;cullin-RING ubiquitin ligase complex;0.0124405028767075!GO:0000049;tRNA binding;0.0124405028767075!GO:0044438;microbody part;0.012519315991222!GO:0044439;peroxisomal part;0.012519315991222!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0127155636688092!GO:0000428;DNA-directed RNA polymerase complex;0.0127155636688092!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0128139790454912!GO:0008097;5S rRNA binding;0.0129074993113824!GO:0006497;protein amino acid lipidation;0.0129359905721473!GO:0051090;regulation of transcription factor activity;0.0135092796546597!GO:0050790;regulation of catalytic activity;0.0135092796546597!GO:0016301;kinase activity;0.0140033023500846!GO:0007004;telomere maintenance via telomerase;0.0140033023500846!GO:0032508;DNA duplex unwinding;0.0143856738088556!GO:0032392;DNA geometric change;0.0143856738088556!GO:0008047;enzyme activator activity;0.0146640452831238!GO:0048487;beta-tubulin binding;0.014723509172557!GO:0016791;phosphoric monoester hydrolase activity;0.014723509172557!GO:0015980;energy derivation by oxidation of organic compounds;0.0148107173372285!GO:0043087;regulation of GTPase activity;0.0150914375932262!GO:0016763;transferase activity, transferring pentosyl groups;0.0150914375932262!GO:0005048;signal sequence binding;0.0150914375932262!GO:0045603;positive regulation of endothelial cell differentiation;0.0150914375932262!GO:0050852;T cell receptor signaling pathway;0.0153595080147852!GO:0016859;cis-trans isomerase activity;0.0154605861005405!GO:0000059;protein import into nucleus, docking;0.0156703696816353!GO:0022403;cell cycle phase;0.0156934771248381!GO:0006376;mRNA splice site selection;0.0156934771248381!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0156934771248381!GO:0009165;nucleotide biosynthetic process;0.015702612937049!GO:0008139;nuclear localization sequence binding;0.0158306008635744!GO:0000119;mediator complex;0.0158500931694481!GO:0008276;protein methyltransferase activity;0.016033431427088!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0164053349481303!GO:0008017;microtubule binding;0.0166363845395561!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0169971021196328!GO:0001667;ameboidal cell migration;0.017217774683838!GO:0032027;myosin light chain binding;0.017217774683838!GO:0009889;regulation of biosynthetic process;0.017556033980166!GO:0006406;mRNA export from nucleus;0.0177431938130442!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0177431938130442!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0179515817237529!GO:0005765;lysosomal membrane;0.0182973065692336!GO:0048471;perinuclear region of cytoplasm;0.0183476998760612!GO:0051092;activation of NF-kappaB transcription factor;0.0190183805736779!GO:0016569;covalent chromatin modification;0.0194819597544205!GO:0008094;DNA-dependent ATPase activity;0.0195814291376561!GO:0006506;GPI anchor biosynthetic process;0.019751385325047!GO:0033116;ER-Golgi intermediate compartment membrane;0.019950029459517!GO:0016605;PML body;0.0203096000431411!GO:0000178;exosome (RNase complex);0.0203474384249293!GO:0050811;GABA receptor binding;0.0203474384249293!GO:0016853;isomerase activity;0.0203474384249293!GO:0046822;regulation of nucleocytoplasmic transport;0.0203808339467513!GO:0016570;histone modification;0.0206543254249486!GO:0031903;microbody membrane;0.0210404572784572!GO:0005778;peroxisomal membrane;0.0210404572784572!GO:0048522;positive regulation of cellular process;0.0213239385559996!GO:0016585;chromatin remodeling complex;0.0213623713765182!GO:0022406;membrane docking;0.021546043145201!GO:0048278;vesicle docking;0.021546043145201!GO:0009112;nucleobase metabolic process;0.0216319627174928!GO:0046467;membrane lipid biosynthetic process;0.0217781129319937!GO:0043022;ribosome binding;0.0218474385637179!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0219577022708446!GO:0043621;protein self-association;0.0222137342298584!GO:0000738;DNA catabolic process, exonucleolytic;0.0226161149259168!GO:0031647;regulation of protein stability;0.0226476241768068!GO:0022415;viral reproductive process;0.0227061778557947!GO:0044437;vacuolar part;0.0227709329304698!GO:0007050;cell cycle arrest;0.0228503638205382!GO:0016272;prefoldin complex;0.0229124417483919!GO:0005869;dynactin complex;0.0229670974329608!GO:0006904;vesicle docking during exocytosis;0.0230926503802536!GO:0006914;autophagy;0.0230929011062686!GO:0016311;dephosphorylation;0.0231351194177628!GO:0015923;mannosidase activity;0.0231351194177628!GO:0009967;positive regulation of signal transduction;0.023220237709469!GO:0009966;regulation of signal transduction;0.0234234057638124!GO:0003702;RNA polymerase II transcription factor activity;0.023539579899672!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0235857932330577!GO:0015002;heme-copper terminal oxidase activity;0.0235857932330577!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0235857932330577!GO:0004129;cytochrome-c oxidase activity;0.0235857932330577!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0236653934618876!GO:0010257;NADH dehydrogenase complex assembly;0.0236653934618876!GO:0033108;mitochondrial respiratory chain complex assembly;0.0236653934618876!GO:0000087;M phase of mitotic cell cycle;0.02469449794452!GO:0019901;protein kinase binding;0.02469449794452!GO:0042110;T cell activation;0.0255932351565203!GO:0006505;GPI anchor metabolic process;0.0259114528490608!GO:0030660;Golgi-associated vesicle membrane;0.0259712312975888!GO:0005521;lamin binding;0.0263645599851136!GO:0009161;ribonucleoside monophosphate metabolic process;0.027769610878861!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.027769610878861!GO:0030137;COPI-coated vesicle;0.0278481300424795!GO:0031252;leading edge;0.027936783816577!GO:0008287;protein serine/threonine phosphatase complex;0.0279666174011158!GO:0006595;polyamine metabolic process;0.0281577423964349!GO:0000287;magnesium ion binding;0.0282874218294205!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.028738344451399!GO:0000118;histone deacetylase complex;0.0290842226097186!GO:0006013;mannose metabolic process;0.0291282907232059!GO:0030663;COPI coated vesicle membrane;0.029527684371637!GO:0030126;COPI vesicle coat;0.029527684371637!GO:0046854;phosphoinositide phosphorylation;0.0299404492939473!GO:0006278;RNA-dependent DNA replication;0.0308144181069488!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0310740836265549!GO:0042608;T cell receptor binding;0.0314134454888446!GO:0007067;mitosis;0.032987875932619!GO:0001772;immunological synapse;0.0333059472589836!GO:0042802;identical protein binding;0.0337392219586202!GO:0045045;secretory pathway;0.0337673493612592!GO:0005832;chaperonin-containing T-complex;0.0343675581679359!GO:0000090;mitotic anaphase;0.0346617956789841!GO:0051322;anaphase;0.0346617956789841!GO:0000175;3'-5'-exoribonuclease activity;0.0346669274592024!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0347347543290083!GO:0008213;protein amino acid alkylation;0.0347751670714647!GO:0006479;protein amino acid methylation;0.0347751670714647!GO:0030127;COPII vesicle coat;0.0350212353827354!GO:0012507;ER to Golgi transport vesicle membrane;0.0350212353827354!GO:0042158;lipoprotein biosynthetic process;0.0350400746247446!GO:0004003;ATP-dependent DNA helicase activity;0.0352958387474256!GO:0004722;protein serine/threonine phosphatase activity;0.0354875853308971!GO:0051098;regulation of binding;0.0355289546848938!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0356273312904554!GO:0051920;peroxiredoxin activity;0.0358911548693185!GO:0019900;kinase binding;0.0359119847240652!GO:0004402;histone acetyltransferase activity;0.0359605097727635!GO:0004468;lysine N-acetyltransferase activity;0.0359605097727635!GO:0004177;aminopeptidase activity;0.0362638699857718!GO:0045947;negative regulation of translational initiation;0.0365813546938557!GO:0046426;negative regulation of JAK-STAT cascade;0.0378072090627409!GO:0051059;NF-kappaB binding;0.038392138520905!GO:0031902;late endosome membrane;0.038445449155813!GO:0008180;signalosome;0.038445449155813!GO:0031124;mRNA 3'-end processing;0.0384990205536685!GO:0042809;vitamin D receptor binding;0.039045200361695!GO:0046834;lipid phosphorylation;0.0390579561031185!GO:0051235;maintenance of localization;0.0391386496983723!GO:0006268;DNA unwinding during replication;0.040569258234484!GO:0004659;prenyltransferase activity;0.0412059931380899!GO:0006144;purine base metabolic process;0.0417015380411052!GO:0045815;positive regulation of gene expression, epigenetic;0.0428522672108496!GO:0002378;immunoglobulin biosynthetic process;0.0428722589627567!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0428722589627567!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0428722589627567!GO:0042393;histone binding;0.043204453600611!GO:0035258;steroid hormone receptor binding;0.0438698057238449!GO:0030134;ER to Golgi transport vesicle;0.0439118279369677!GO:0007034;vacuolar transport;0.0450758244171718!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0450758244171718!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0450758244171718!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0450758244171718!GO:0051452;cellular pH reduction;0.0453614946839853!GO:0051453;regulation of cellular pH;0.0453614946839853!GO:0045851;pH reduction;0.0453614946839853!GO:0004197;cysteine-type endopeptidase activity;0.0454043168840317!GO:0030833;regulation of actin filament polymerization;0.0456419209076779!GO:0045309;protein phosphorylated amino acid binding;0.0456419209076779!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0462670305674536!GO:0007021;tubulin folding;0.0470829607516432!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.047084537198921!GO:0000339;RNA cap binding;0.048133086281336!GO:0005777;peroxisome;0.048133086281336!GO:0042579;microbody;0.048133086281336!GO:0000303;response to superoxide;0.0486533811635593!GO:0004576;oligosaccharyl transferase activity;0.0488451505548112!GO:0051251;positive regulation of lymphocyte activation;0.049928708099793
|sample_id=11784
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
|top_motifs=CREB1:3.18235170475;PAX3,7:3.1408135587;FOX{D1,D2}:2.7672250209;CDX1,2,4:2.68457695149;BPTF:2.55440689279;FOXO1,3,4:2.52972323296;RUNX1..3:2.39116857311;ATF4:2.27711902255;ATF5_CREB3:2.2183054403;ELF1,2,4:2.13925178531;FOX{F1,F2,J1}:2.11923508118;RFX2..5_RFXANK_RFXAP:2.03151528298;PAX6:1.93749895832;ETS1,2:1.89867059915;ZBTB16:1.75947847015;DMAP1_NCOR{1,2}_SMARC:1.71723719424;PDX1:1.6779746085;HMX1:1.63581274502;PBX1:1.57826363705;FOXN1:1.55373062705;TLX2:1.51050760002;LEF1_TCF7_TCF7L1,2:1.47713837171;RFX1:1.41398132721;FOX{I1,J2}:1.39602857666;NKX6-1,2:1.33029312325;TGIF1:1.28585156284;ATF2:1.28216600985;BREu{core}:1.25236858182;T:1.24035093151;NKX2-1,4:1.20086646436;PAX4:1.19379120757;ELK1,4_GABP{A,B1}:1.17665338648;JUN:1.14236629383;ATF6:1.0910073175;SPI1:1.06933420888;IKZF2:1.05666279334;AHR_ARNT_ARNT2:1.04912737191;PAX2:1.01238609601;HIF1A:0.94129530429;RORA:0.937476610156;SPZ1:0.934512116748;IRF1,2:0.903663083245;SPIB:0.850386427237;GATA6:0.841600086182;FOXP1:0.681189626713;ZEB1:0.676186411821;STAT1,3:0.646567305938;EP300:0.510829928462;PITX1..3:0.473955661613;SNAI1..3:0.416588037982;NFIL3:0.410956587175;NRF1:0.380107571822;FOXQ1:0.377053682893;SOX2:0.375620064335;IRF7:0.342634208205;STAT5{A,B}:0.334677531091;NFIX:0.331288374066;HBP1_HMGB_SSRP1_UBTF:0.330553816782;SOX5:0.307787656974;CUX2:0.301900064302;LMO2:0.300904821291;YY1:0.220170179876;HOX{A6,A7,B6,B7}:0.181832040629;AIRE:0.136868960977;NFKB1_REL_RELA:0.125993220787;HES1:0.119073183441;MYOD1:0.101654819867;NKX2-2,8:0.0877269187732;SREBF1,2:0.0813295346192;NFE2L1:0.0397596489155;TAL1_TCF{3,4,12}:0.0306125932191;POU1F1:0.0305776975119;EVI1:0.0216220829311;NANOG{mouse}:-0.00185515756914;NR5A1,2:-0.0178147854031;MYB:-0.0385762153455;FOXA2:-0.0393873365418;POU2F1..3:-0.0670247357708;ALX1:-0.0778655153074;FOXD3:-0.101535319684;MAFB:-0.102868575862;NANOG:-0.132535068928;NKX3-1:-0.139546997304;NFATC1..3:-0.163176334164;SMAD1..7,9:-0.175925471862;NFY{A,B,C}:-0.186289788128;OCT4_SOX2{dimer}:-0.217642231524;POU3F1..4:-0.218899940731;ZNF143:-0.223024612475;EGR1..3:-0.244343162474;RREB1:-0.290154473338;HAND1,2:-0.297919489002;CRX:-0.30232849966;TOPORS:-0.327455658937;VSX1,2:-0.379754112891;PPARG:-0.384504929833;HOXA9_MEIS1:-0.405151087351;E2F1..5:-0.417181854703;AR:-0.424670335758;TBX4,5:-0.428927458485;MYFfamily:-0.44865028388;HNF4A_NR2F1,2:-0.449493474542;PAX5:-0.453869672514;HNF1A:-0.45684815399;FOSL2:-0.501788584041;PRRX1,2:-0.534414861696;STAT2,4,6:-0.568884767228;HLF:-0.584838988063;ALX4:-0.587700706286;CEBPA,B_DDIT3:-0.603233106318;NHLH1,2:-0.634026957971;ADNP_IRX_SIX_ZHX:-0.651258940716;DBP:-0.653766443931;GFI1B:-0.660664484662;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.714028719308;MEF2{A,B,C,D}:-0.719747842167;GCM1,2:-0.744849298754;MED-1{core}:-0.764072011371;RBPJ:-0.794653474248;FOXP3:-0.798353743539;FOS_FOS{B,L1}_JUN{B,D}:-0.805237187168;FOXM1:-0.818081036302;MZF1:-0.819484489929;ZFP161:-0.828671999212;BACH2:-0.831008099515;ZNF148:-0.891824038582;ZNF384:-0.893235251345;SOX{8,9,10}:-0.912595080663;REST:-0.916466955452;NFE2:-0.918016908284;HMGA1,2:-0.927820833553;GLI1..3:-0.939338957368;SOX17:-0.940134154681;ZBTB6:-0.951206469586;NR6A1:-0.995752525698;ZNF423:-0.997168530253;GFI1:-1.00081758975;SRF:-1.00631942331;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.00773417784;MYBL2:-1.04491409143;ARID5B:-1.06278883574;POU6F1:-1.07586886854;bHLH_family:-1.0998940353;MTE{core}:-1.12099306003;FOXL1:-1.12826378123;PRDM1:-1.13671718706;PATZ1:-1.14491747552;UFEwm:-1.15342948567;MTF1:-1.16934349959;GATA4:-1.17245682739;LHX3,4:-1.20341347507;XBP1:-1.27935290058;RXRA_VDR{dimer}:-1.2813867557;ZNF238:-1.29439055739;TP53:-1.39601804491;EBF1:-1.40685329911;HOX{A5,B5}:-1.410571741;MAZ:-1.41165703407;SP1:-1.43555013167;NKX2-3_NKX2-5:-1.44498296205;POU5F1:-1.47640229526;KLF4:-1.48758764836;TFAP4:-1.51404402518;XCPE1{core}:-1.54002025913;ONECUT1,2:-1.55806992886;PAX8:-1.56339549085;NFE2L2:-1.56363486826;GTF2A1,2:-1.58500359831;NR3C1:-1.60542399374;GTF2I:-1.6304771583;HIC1:-1.64670363268;TEF:-1.6524063188;TEAD1:-1.669828966;EN1,2:-1.70288430755;TFAP2B:-1.7169325745;TLX1..3_NFIC{dimer}:-1.73066852569;HOX{A4,D4}:-1.73446835578;RXR{A,B,G}:-1.74763637604;TFCP2:-1.76790578742;GZF1:-1.78165755208;CDC5L:-1.80866588375;TBP:-1.86719244618;ZIC1..3:-1.91753762379;NKX3-2:-1.92475049481;NR1H4:-1.98484251379;TFDP1:-2.0080464964;ESR1:-2.09146681855;HSF1,2:-2.21620639535;TFAP2{A,C}:-2.22150135815;ESRRA:-2.37746634465;PAX1,9:-2.59880583867;IKZF1:-2.87692303624
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11784-124B2;search_select_hide=table117:FF:11784-124B2
}}
}}

Latest revision as of 18:20, 4 June 2020

Name:CD4+CD25-CD45RA+ naive conventional T cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13223
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age25
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004701
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13223 CAGE DRX008190 DRR009062
Accession ID Hg19

Library idBAMCTSS
CNhs13223 DRZ000487 DRZ001872
Accession ID Hg38

Library idBAMCTSS
CNhs13223 DRZ011837 DRZ013222
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.113
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.261
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.202
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.42
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.00241
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.217
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.303
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.716
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.449
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.933
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0526
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0877
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.113
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.574
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0797
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.822
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.16
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.452
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.452
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.186
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.755
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.113
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.847
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.885
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.726
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.605
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.55
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.861
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.0601
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.958
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.202
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.0601
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0601
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13223

Jaspar motifP-value
MA0002.26.77667e-4
MA0003.10.39
MA0004.10.922
MA0006.10.0583
MA0007.10.888
MA0009.10.279
MA0014.10.598
MA0017.10.615
MA0018.26.48717e-8
MA0019.10.931
MA0024.10.592
MA0025.10.349
MA0027.10.744
MA0028.19.56932e-5
MA0029.10.328
MA0030.10.0237
MA0031.11.1291e-4
MA0035.20.329
MA0038.10.107
MA0039.20.915
MA0040.10.675
MA0041.10.311
MA0042.10.94
MA0043.10.018
MA0046.10.179
MA0047.20.182
MA0048.10.769
MA0050.11.82027e-4
MA0051.10.0175
MA0052.10.00643
MA0055.10.98
MA0057.10.489
MA0058.10.967
MA0059.10.807
MA0060.10.355
MA0061.10.292
MA0062.24.09262e-16
MA0065.20.525
MA0066.10.833
MA0067.10.0334
MA0068.10.378
MA0069.10.97
MA0070.10.687
MA0071.10.596
MA0072.10.612
MA0073.10.976
MA0074.10.447
MA0076.16.69874e-7
MA0077.10.0279
MA0078.10.75
MA0079.20.566
MA0080.21.07167e-10
MA0081.10.0168
MA0083.10.0109
MA0084.10.333
MA0087.10.574
MA0088.10.273
MA0090.15.06345e-4
MA0091.10.539
MA0092.10.759
MA0093.10.943
MA0099.21.98773e-9
MA0100.10.567
MA0101.10.402
MA0102.20.596
MA0103.10.234
MA0104.20.0696
MA0105.10.00649
MA0106.10.0736
MA0107.10.27
MA0108.21.32703e-9
MA0111.10.217
MA0112.20.61
MA0113.10.568
MA0114.10.781
MA0115.10.593
MA0116.10.00621
MA0117.10.0958
MA0119.10.553
MA0122.10.666
MA0124.10.559
MA0125.10.0956
MA0131.10.0642
MA0135.10.075
MA0136.14.15826e-22
MA0137.20.515
MA0138.20.33
MA0139.10.103
MA0140.10.372
MA0141.10.184
MA0142.10.0597
MA0143.10.0939
MA0144.10.469
MA0145.10.0315
MA0146.10.779
MA0147.10.0893
MA0148.10.31
MA0149.10.248
MA0150.10.0527
MA0152.17.37445e-4
MA0153.10.229
MA0154.10.487
MA0155.10.281
MA0156.11.06941e-18
MA0157.11.03947e-4
MA0159.10.837
MA0160.10.434
MA0162.10.21
MA0163.12.05226e-5
MA0164.10.891
MA0258.10.964
MA0259.10.0969



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13223

Novel motifP-value
10.542
100.0201
1000.587
1010.23
1020.795
1030.877
1040.924
1050.536
1060.787
1076.93466e-4
1080.557
1090.348
110.372
1100.926
1110.616
1120.859
1130.431
1140.641
1150.23
1160.201
1170.00193
1180.33
1190.115
120.767
1200.709
1210.847
1220.764
1235.31024e-4
1240.596
1250.564
1260.893
1270.989
1280.376
1290.737
130.724
1300.343
1310.312
1320.572
1330.821
1340.596
1350.768
1360.705
1370.0295
1380.348
1390.0912
140.699
1400.266
1410.478
1420.356
1430.00882
1440.838
1450.629
1460.911
1470.0128
1480.406
1490.298
150.318
1500.883
1510.515
1520.169
1530.756
1540.308
1550.0216
1560.976
1570.475
1580.00367
1590.891
160.456
1600.334
1610.93
1620.0961
1630.351
1640.11
1650.575
1660.431
1670.0944
1680.93
1690.134
170.459
180.636
190.0558
20.284
200.364
210.523
220.301
230.304
240.656
250.112
260.938
270.638
280.651
290.0364
30.255
300.0925
310.602
320.0189
330.219
340.275
350.132
360.0326
370.4
380.77
390.134
40.583
400.942
410.23
420.166
430.663
440.936
450.213
460.587
470.242
480.469
490.142
50.591
500.443
510.96
520.236
530.567
540.841
550.808
560.968
570.844
580.19
590.409
60.781
600.982
610.097
620.209
630.894
640.586
650.63
660.695
670.715
680.752
690.846
70.532
700.124
710.151
720.161
730.778
740.72
750.00825
760.12
770.0096
780.643
790.756
80.635
800.0324
810.395
820.256
830.593
840.619
850.318
860.292
870.421
880.972
890.0582
90.753
900.0332
910.574
920.92
930.899
940.379
950.205
960.371
970.346
980.287
991.40109e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13223


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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