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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005582
|DRA_sample_Accession=CAGE@SAMD00005582
|accession_numbers=CAGE;DRX008038;DRR008910;DRZ000335;DRZ001720
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005582
|accession_numbers=CAGE;DRX008038;DRR008910;DRZ000335;DRZ001720;DRZ011685;DRZ013070
|accession_numbers_RNASeq=sRNA-Seq;DRX036983;DRR041349;DRZ006991
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 79: Line 81:
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|sample_category=fractionations and perturbations
Line 102: Line 105:
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.70352351509;NKX3-1:2.19423753934;EN1,2:2.09405060962;TOPORS:2.05249817699;ALX4:2.03342984804;ZNF384:1.83461449249;HIF1A:1.74565650876;XBP1:1.56496051319;PITX1..3:1.48018603739;MYBL2:1.46590259521;FOXP1:1.38954441296;TFDP1:1.37753330902;ZNF238:1.35603636626;HMGA1,2:1.34410513826;GFI1:1.32955253911;TEAD1:1.32796729966;NKX3-2:1.32688215835;HSF1,2:1.31377881735;GZF1:1.26644751571;SRF:1.2408739926;HOX{A5,B5}:1.1851296749;EVI1:1.17098306409;GTF2A1,2:1.14781398213;GATA4:1.127936979;PRDM1:1.08603781724;GFI1B:1.04383434595;KLF4:1.03866715033;PAX8:1.01784720465;SOX17:0.979420690506;HOX{A6,A7,B6,B7}:0.977121937062;E2F1..5:0.951288937886;RXR{A,B,G}:0.944159525849;MTE{core}:0.940664727191;GCM1,2:0.921323370833;HOX{A4,D4}:0.901440321529;POU3F1..4:0.881452117626;AHR_ARNT_ARNT2:0.878528780453;MZF1:0.853610588544;ESR1:0.820502806933;MYB:0.807102209085;GTF2I:0.77133004179;PPARG:0.767973495963;STAT1,3:0.76420642071;XCPE1{core}:0.747941608517;UFEwm:0.747110524813;FOXL1:0.7463449756;TLX1..3_NFIC{dimer}:0.720916905832;ZIC1..3:0.719402866128;NKX6-1,2:0.701336673898;MAZ:0.665431979968;SMAD1..7,9:0.653577577081;NKX2-1,4:0.648487593322;ELK1,4_GABP{A,B1}:0.633361235011;TP53:0.573987461453;NR3C1:0.572014470695;NFATC1..3:0.56679709036;MAFB:0.550212284078;TFAP2B:0.536465857884;TAL1_TCF{3,4,12}:0.532569514228;NKX2-2,8:0.5295016603;DBP:0.521446812163;MED-1{core}:0.520415789074;NFY{A,B,C}:0.514799346777;YY1:0.507668229346;ZNF143:0.491614447676;NRF1:0.479022261223;NFE2L1:0.443307515582;POU1F1:0.437739707074;POU5F1:0.436255300792;GLI1..3:0.4182673028;PAX4:0.414455570354;FOX{I1,J2}:0.408732885976;EP300:0.406821828788;FOXN1:0.390895932769;BACH2:0.359618258997;HMX1:0.356362876101;HES1:0.356024435584;TBP:0.347864097511;TEF:0.340096768339;RXRA_VDR{dimer}:0.330934966522;SPZ1:0.327177063843;FOS_FOS{B,L1}_JUN{B,D}:0.323133217211;ALX1:0.307192432035;CREB1:0.302674576891;PAX3,7:0.290413232291;AIRE:0.273294702146;SOX5:0.210679360213;FOSL2:0.174767781762;NFE2L2:0.165480196878;CDC5L:0.145986480913;LHX3,4:0.128872070107;ZBTB16:0.125893641398;CEBPA,B_DDIT3:0.115774256226;ATF6:0.114233822786;HLF:0.105790420403;FOXA2:0.101064768562;RFX1:0.0999623595054;MEF2{A,B,C,D}:0.0980653922032;TLX2:0.0918964892255;NKX2-3_NKX2-5:0.0862608425374;RREB1:0.0826443968814;EBF1:0.0807016439319;FOXD3:0.0755361002146;ZBTB6:0.0675663608309;NFE2:0.0518515919845;HIC1:0.0478460536597;IKZF1:0.0404427506804;NANOG{mouse}:0.036870890382;SP1:0.0270277282751;TFAP4:0.0209498284994;ELF1,2,4:0.0139518998535;PRRX1,2:-0.00673951760799;SOX2:-0.0138145150841;TFAP2{A,C}:-0.0187195327916;EGR1..3:-0.0195056907009;LEF1_TCF7_TCF7L1,2:-0.0450949423457;ZFP161:-0.0519257562142;MYFfamily:-0.0646638411016;BPTF:-0.0760493641578;NR1H4:-0.0846648347956;VSX1,2:-0.096802677077;DMAP1_NCOR{1,2}_SMARC:-0.104952832323;SREBF1,2:-0.106679601885;ZNF148:-0.108226787597;ATF5_CREB3:-0.135672086569;T:-0.13971215641;PATZ1:-0.142221744712;SOX{8,9,10}:-0.146943746117;PDX1:-0.171986520084;ADNP_IRX_SIX_ZHX:-0.217688172819;PAX5:-0.233348342603;OCT4_SOX2{dimer}:-0.256024766277;NFIL3:-0.263748964942;PAX2:-0.268527692334;JUN:-0.28143173338;NFIX:-0.286934595792;IRF1,2:-0.299855482723;NHLH1,2:-0.301902748465;HNF1A:-0.305371760232;RFX2..5_RFXANK_RFXAP:-0.324529038983;BREu{core}:-0.325907154238;STAT2,4,6:-0.334893044865;ONECUT1,2:-0.3378324781;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.41669807785;ZNF423:-0.417371176147;ATF4:-0.423869117327;RUNX1..3:-0.428944498522;HOXA9_MEIS1:-0.44258010771;bHLH_family:-0.45204881078;TFCP2:-0.456532111286;TBX4,5:-0.468531222121;POU6F1:-0.476416085993;FOX{D1,D2}:-0.488298513541;SPI1:-0.488614934895;SPIB:-0.494047613334;NANOG:-0.495030042738;CUX2:-0.54319045937;FOXO1,3,4:-0.568778693732;CRX:-0.579767023592;MTF1:-0.580501327521;AR:-0.607793592046;ETS1,2:-0.613309890343;RBPJ:-0.61349964092;POU2F1..3:-0.668260066167;HAND1,2:-0.675025543171;PAX1,9:-0.696240479342;NFKB1_REL_RELA:-0.713583983522;CDX1,2,4:-0.714330854878;TGIF1:-0.715821756299;HNF4A_NR2F1,2:-0.728233349829;NR6A1:-0.730960565006;ATF2:-0.733114766224;ARID5B:-0.741037478436;IKZF2:-0.802318170935;REST:-0.834944889673;IRF7:-0.845031696999;FOXP3:-0.857780331527;FOXQ1:-0.894228102275;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.915203551771;GATA6:-0.98718556029;STAT5{A,B}:-1.10737812677;PBX1:-1.15209365084;NR5A1,2:-1.19856141685;FOXM1:-1.25580780188;SNAI1..3:-1.27496662624;ZEB1:-1.37051812453;LMO2:-1.42629959578;PAX6:-1.50432045777;RORA:-1.6244849389;ESRRA:-1.7875225255;FOX{F1,F2,J1}:-1.84020154824;MYOD1:-1.98238331001
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.70352351509;NKX3-1:2.19423753934;EN1,2:2.09405060962;TOPORS:2.05249817699;ALX4:2.03342984804;ZNF384:1.83461449249;HIF1A:1.74565650876;XBP1:1.56496051319;PITX1..3:1.48018603739;MYBL2:1.46590259521;FOXP1:1.38954441296;TFDP1:1.37753330902;ZNF238:1.35603636626;HMGA1,2:1.34410513826;GFI1:1.32955253911;TEAD1:1.32796729966;NKX3-2:1.32688215835;HSF1,2:1.31377881735;GZF1:1.26644751571;SRF:1.2408739926;HOX{A5,B5}:1.1851296749;EVI1:1.17098306409;GTF2A1,2:1.14781398213;GATA4:1.127936979;PRDM1:1.08603781724;GFI1B:1.04383434595;KLF4:1.03866715033;PAX8:1.01784720465;SOX17:0.979420690506;HOX{A6,A7,B6,B7}:0.977121937062;E2F1..5:0.951288937886;RXR{A,B,G}:0.944159525849;MTE{core}:0.940664727191;GCM1,2:0.921323370833;HOX{A4,D4}:0.901440321529;POU3F1..4:0.881452117626;AHR_ARNT_ARNT2:0.878528780453;MZF1:0.853610588544;ESR1:0.820502806933;MYB:0.807102209085;GTF2I:0.77133004179;PPARG:0.767973495963;STAT1,3:0.76420642071;XCPE1{core}:0.747941608517;UFEwm:0.747110524813;FOXL1:0.7463449756;TLX1..3_NFIC{dimer}:0.720916905832;ZIC1..3:0.719402866128;NKX6-1,2:0.701336673898;MAZ:0.665431979968;SMAD1..7,9:0.653577577081;NKX2-1,4:0.648487593322;ELK1,4_GABP{A,B1}:0.633361235011;TP53:0.573987461453;NR3C1:0.572014470695;NFATC1..3:0.56679709036;MAFB:0.550212284078;TFAP2B:0.536465857884;TAL1_TCF{3,4,12}:0.532569514228;NKX2-2,8:0.5295016603;DBP:0.521446812163;MED-1{core}:0.520415789074;NFY{A,B,C}:0.514799346777;YY1:0.507668229346;ZNF143:0.491614447676;NRF1:0.479022261223;NFE2L1:0.443307515582;POU1F1:0.437739707074;POU5F1:0.436255300792;GLI1..3:0.4182673028;PAX4:0.414455570354;FOX{I1,J2}:0.408732885976;EP300:0.406821828788;FOXN1:0.390895932769;BACH2:0.359618258997;HMX1:0.356362876101;HES1:0.356024435584;TBP:0.347864097511;TEF:0.340096768339;RXRA_VDR{dimer}:0.330934966522;SPZ1:0.327177063843;FOS_FOS{B,L1}_JUN{B,D}:0.323133217211;ALX1:0.307192432035;CREB1:0.302674576891;PAX3,7:0.290413232291;AIRE:0.273294702146;SOX5:0.210679360213;FOSL2:0.174767781762;NFE2L2:0.165480196878;CDC5L:0.145986480913;LHX3,4:0.128872070107;ZBTB16:0.125893641398;CEBPA,B_DDIT3:0.115774256226;ATF6:0.114233822786;HLF:0.105790420403;FOXA2:0.101064768562;RFX1:0.0999623595054;MEF2{A,B,C,D}:0.0980653922032;TLX2:0.0918964892255;NKX2-3_NKX2-5:0.0862608425374;RREB1:0.0826443968814;EBF1:0.0807016439319;FOXD3:0.0755361002146;ZBTB6:0.0675663608309;NFE2:0.0518515919845;HIC1:0.0478460536597;IKZF1:0.0404427506804;NANOG{mouse}:0.036870890382;SP1:0.0270277282751;TFAP4:0.0209498284994;ELF1,2,4:0.0139518998535;PRRX1,2:-0.00673951760799;SOX2:-0.0138145150841;TFAP2{A,C}:-0.0187195327916;EGR1..3:-0.0195056907009;LEF1_TCF7_TCF7L1,2:-0.0450949423457;ZFP161:-0.0519257562142;MYFfamily:-0.0646638411016;BPTF:-0.0760493641578;NR1H4:-0.0846648347956;VSX1,2:-0.096802677077;DMAP1_NCOR{1,2}_SMARC:-0.104952832323;SREBF1,2:-0.106679601885;ZNF148:-0.108226787597;ATF5_CREB3:-0.135672086569;T:-0.13971215641;PATZ1:-0.142221744712;SOX{8,9,10}:-0.146943746117;PDX1:-0.171986520084;ADNP_IRX_SIX_ZHX:-0.217688172819;PAX5:-0.233348342603;OCT4_SOX2{dimer}:-0.256024766277;NFIL3:-0.263748964942;PAX2:-0.268527692334;JUN:-0.28143173338;NFIX:-0.286934595792;IRF1,2:-0.299855482723;NHLH1,2:-0.301902748465;HNF1A:-0.305371760232;RFX2..5_RFXANK_RFXAP:-0.324529038983;BREu{core}:-0.325907154238;STAT2,4,6:-0.334893044865;ONECUT1,2:-0.3378324781;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.41669807785;ZNF423:-0.417371176147;ATF4:-0.423869117327;RUNX1..3:-0.428944498522;HOXA9_MEIS1:-0.44258010771;bHLH_family:-0.45204881078;TFCP2:-0.456532111286;TBX4,5:-0.468531222121;POU6F1:-0.476416085993;FOX{D1,D2}:-0.488298513541;SPI1:-0.488614934895;SPIB:-0.494047613334;NANOG:-0.495030042738;CUX2:-0.54319045937;FOXO1,3,4:-0.568778693732;CRX:-0.579767023592;MTF1:-0.580501327521;AR:-0.607793592046;ETS1,2:-0.613309890343;RBPJ:-0.61349964092;POU2F1..3:-0.668260066167;HAND1,2:-0.675025543171;PAX1,9:-0.696240479342;NFKB1_REL_RELA:-0.713583983522;CDX1,2,4:-0.714330854878;TGIF1:-0.715821756299;HNF4A_NR2F1,2:-0.728233349829;NR6A1:-0.730960565006;ATF2:-0.733114766224;ARID5B:-0.741037478436;IKZF2:-0.802318170935;REST:-0.834944889673;IRF7:-0.845031696999;FOXP3:-0.857780331527;FOXQ1:-0.894228102275;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.915203551771;GATA6:-0.98718556029;STAT5{A,B}:-1.10737812677;PBX1:-1.15209365084;NR5A1,2:-1.19856141685;FOXM1:-1.25580780188;SNAI1..3:-1.27496662624;ZEB1:-1.37051812453;LMO2:-1.42629959578;PAX6:-1.50432045777;RORA:-1.6244849389;ESRRA:-1.7875225255;FOX{F1,F2,J1}:-1.84020154824;MYOD1:-1.98238331001
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14302-155B9;search_select_hide=table117:FF:14302-155B9
}}
}}

Latest revision as of 19:05, 4 June 2020

Name:Fibroblast - skin normal, donor2 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12582
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age3 year old child
cell typefibroblast
cell lineNA
companyCoriell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005582
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12582 CAGE DRX008038 DRR008910
Accession ID Hg19

Library idBAMCTSS
CNhs12582 DRZ000335 DRZ001720
Accession ID Hg38

Library idBAMCTSS
CNhs12582 DRZ011685 DRZ013070
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005582
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.ACAGTG sRNA-Seq DRX036983 DRR041349
Accession ID Hg19

Library idBAMCTSS
SRhi10009.ACAGTG DRZ006991


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.231
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.592
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0677
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.673
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0677
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.17
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.321
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.504
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0461
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0499
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.218
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.023
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.126
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0344
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.504
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0677
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.224
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.164
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.126
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0677
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.382
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.291
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.588
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.285
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.087
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.657
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.783
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.926
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12582

Jaspar motifP-value
MA0002.20.00105
MA0003.10.0102
MA0004.10.268
MA0006.10.695
MA0007.10.321
MA0009.10.644
MA0014.10.321
MA0017.18.67843e-4
MA0018.20.712
MA0019.10.0731
MA0024.10.0172
MA0025.10.0454
MA0027.10.583
MA0028.10.384
MA0029.10.673
MA0030.10.0284
MA0031.10.0152
MA0035.22.28334e-4
MA0038.10.469
MA0039.20.348
MA0040.10.404
MA0041.10.258
MA0042.10.356
MA0043.10.103
MA0046.10.177
MA0047.20.105
MA0048.10.00346
MA0050.10.0337
MA0051.10.0189
MA0052.10.686
MA0055.10.143
MA0057.10.588
MA0058.10.109
MA0059.10.0997
MA0060.10.432
MA0061.11.56567e-4
MA0062.20.957
MA0065.26.31487e-5
MA0066.10.253
MA0067.10.996
MA0068.10.712
MA0069.10.0313
MA0070.10.347
MA0071.10.0609
MA0072.10.067
MA0073.10.898
MA0074.10.187
MA0076.10.15
MA0077.10.781
MA0078.10.341
MA0079.20.228
MA0080.22.33642e-9
MA0081.10.158
MA0083.10.0107
MA0084.10.195
MA0087.10.582
MA0088.10.964
MA0090.10.0334
MA0091.10.105
MA0092.10.694
MA0093.10.312
MA0099.20.363
MA0100.10.222
MA0101.10.00124
MA0102.20.242
MA0103.18.20781e-6
MA0104.20.0181
MA0105.11.29794e-5
MA0106.10.791
MA0107.13.06238e-4
MA0108.20.0915
MA0111.10.227
MA0112.20.00434
MA0113.10.588
MA0114.10.00122
MA0115.10.205
MA0116.10.125
MA0117.10.927
MA0119.10.51
MA0122.10.761
MA0124.10.589
MA0125.10.942
MA0131.10.181
MA0135.10.195
MA0136.18.60564e-8
MA0137.20.161
MA0138.20.179
MA0139.10.0593
MA0140.10.0358
MA0141.10.00292
MA0142.10.212
MA0143.10.521
MA0144.10.141
MA0145.10.465
MA0146.10.0481
MA0147.10.101
MA0148.10.0113
MA0149.10.785
MA0150.10.0905
MA0152.10.0538
MA0153.10.574
MA0154.10.00112
MA0155.10.0866
MA0156.10.0198
MA0157.10.0192
MA0159.10.0435
MA0160.10.00115
MA0162.10.765
MA0163.10.24
MA0164.10.423
MA0258.10.0117
MA0259.10.392



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12582

Novel motifP-value
10.194
100.699
1000.823
1010.865
1020.567
1030.0114
1040.747
1050.34
1060.033
1070.698
1080.877
1090.0375
110.102
1100.552
1110.199
1120.165
1130.386
1140.064
1150.989
1160.943
1170.316
1180.33
1190.0927
120.758
1200.0525
1210.615
1220.117
1230.872
1240.0874
1250.811
1260.073
1270.129
1280.0404
1290.0604
130.761
1300.816
1310.194
1320.57
1330.711
1340.825
1350.898
1360.235
1370.692
1380.255
1390.00944
140.61
1400.147
1410.0765
1420.244
1430.0149
1440.965
1450.841
1460.415
1470.459
1480.162
1490.784
150.0361
1500.991
1510.297
1520.586
1530.631
1540.255
1550.128
1560.411
1570.109
1580.341
1590.317
160.382
1600.0396
1610.129
1620.424
1630.611
1640.977
1650.59
1660.147
1670.884
1680.48
1690.0564
170.459
180.291
190.756
20.415
200.992
210.315
220.208
230.183
240.125
250.17
260.927
270.146
280.852
290.461
30.636
300.71
310.382
320.0076
330.302
340.619
350.123
360.189
370.313
380.289
390.95
40.469
400.0641
410.0378
420.526
430.245
440.0376
450.317
460.289
470.253
480.528
490.185
50.398
500.708
510.272
520.406
530.941
540.399
550.585
560.342
570.879
580.0629
590.0188
60.455
600.0907
610.219
620.0349
630.55
640.134
650.17
660.892
670.866
680.581
690.776
70.158
700.00389
710.369
720.204
730.384
740.407
750.133
760.991
770.311
780.124
790.283
80.133
800.281
810.422
820.0876
830.2
840.865
850.063
860.815
870.754
880.62
890.104
90.559
900.258
910.824
920.396
930.459
940.226
950.193
960.588
970.748
980.11
990.825



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12582


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000406 (nuclear fraction sample)
0000668 (human Fibroblast - skin normal, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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