FF:14302-155B9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005582 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005582 | ||
|accession_numbers=CAGE;DRX008038;DRR008910;DRZ000335;DRZ001720;DRZ011685;DRZ013070 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036983;DRR041349;DRZ006991 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000408,FF:0000350,FF:0000406,FF:0000668 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12582.14302-155B9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12582.14302-155B9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12582.14302-155B9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12582.14302-155B9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12582.14302-155B9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14302-155B9 | |id=FF:14302-155B9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000668 | ||
|is_obsolete= | |||
|library_id=CNhs12582 | |||
|library_id_phase_based=2:CNhs12582 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14302 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.ACAGTG.14302 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14302 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.ACAGTG.14302 | |||
|name=Fibroblast - skin normal, donor2 (nuclear fraction) | |name=Fibroblast - skin normal, donor2 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12582,LSID912,release012,COMPLETED | |profile_hcage=CNhs12582,LSID912,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0925866215484835,0,-0.0452851908468268,-0.24853785630799,0,0,0,0,0,0,0,0,0,0,0,0.303769982450707,0,-0.0270121195102093,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0.0419342586081912,0,0.0677314085379025,0,-0.181461164568595,0,0,0,0,0,0,0,0,0.00965068315611695,0,0,0,0.526709904752676,0,0,0,-0.0969923612426051,0,0,0.303882297287254,0,0,0,0,0,0,0,0,0.0677314085379025,0,0.0677314085379025,0,0,0,0,0,0,0.224042120238607,0.0970211496880602,0,0,0,0,0,-0.00459460934653022,0.0338657042689512,0,0,-0.208829446218769,0.0630536727529369,0,0.526709904752676,0.0338657042689512,0.0677314085379025,0.240706791402452,-0.075321755381786,0,0,0,0,0,0,0,0,0,0,0,0.0677314085379025,0,0,0,0,0,0.104239368327714,0.126310890838218,0,0,-0.0141833864789161,-0.110526149317063,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0.0170553839313119,0,0,0.0677314085379025,0.240706791402452,0,0.0677314085379025,0.126310890838218,0.0677314085379025,0.0677314085379025,0,0.0677314085379025,0,0.526709904752676,0,0,0.182212147914804,0,-0.0182459614116822,0.122217902429356,0,0,0.17264041300658,0,0.177919836311715,0,0.216367397173714,0.0677314085379025,0,0.126310890838218,0.338742142640158,0,0.459501048162172,0,0.253357430861392,0.0970211496880602,0,0,0,0.137680850706917,0.962935793603235,0,0.162394312804674,0.479632778843875,0,0,0,0,-0.00845483639521,0,0.00543140704447773,0.50490074679132,0,0.377721678024867,0.138573626034975,0,0,0,-0.1794675935754,-0.13857926956232,0,0,0.456393701921636,0.139165547852968,0,0,1.57339994710257,0,-0.471981060417358,0.119609766654124,0,0.0383803491969879,0,0,0,0,0.0677314085379025,0,0,0,0.0677314085379025,0,0,0.138528501074087,0.512311650750408,0.123030435336805,0,0.0677314085379025,0.0488031819115339,-0.190423471043592,0.126310890838218,0,-0.305554747418664,0.0691101661552972,0.144644069385166,-0.141486842469542,0,-0.302389727009913,-0.104299769632219,-0.227128414682255,0.00172633509386877,0.19134029326902,-0.0120618832381323,0,-0.144721441796028,0.370074478233008,0.119529054421899,-0.248247308893614,0.0669969138115803,0.397174306102017,0.125717663674131,0,0,0,0.0741564601919479,0,-0.175797705391134,0.36990714802347,0.0897989735054272,0.2384594267994,-0.0357532443232978,0.0658656124611645,0.0688376616986748,0.072488531662633,0.0233342894631142,0,0.191286901535635,0,0,0,-0.0187028859594207,-0.330071849766996,-0.312056190727972,0.0346882081608358,-0.306057625499266,-0.000612852539465664,0,-0.261808527549269,-0.375571035495837,0,0,-0.0105260568756528,0.0677314085379025,0,0.0124779870922747,0,0.0677314085379025,-0.00460280108812161,-0.0127822382774901,-0.0549357252438298,0,0.075785319623326,0.0338657042689512,-0.208326162196729,0,0.0816849568663727,-0.0691856263924555,0,-0.195962141691861,0.00500662459209139,-0.201918827899585,-0.0904983528124975,0.0129291399727122,0.0583759369679714,0.00928458172607735,-0.106525198104109,0.151641210749918,-0.232705241589699,0.494990722483914,0,0.13591528776332,0.0677314085379025,0.142590027959043,0.126739018333907,-0.0109489398598935,0.135138977100406,0.0677314085379025,0.38467221786119,0,-0.177072279971723,0,-0.085334065760894,0.148151181533868,-0.371557966042784,-0.176530636312911,0,-0.0270494967587074,-0.484360955323267,0.0466551544929825,-0.0679917353088795,0,0.0677314085379025,0.115365961618189,0.141604280916795,-0.177784723595638,0.398236800912931,0,0.144162435770032,0,0.0677314085379025,-0.0657955229841,-0.0575562014526737,0,0.0144884583263457,-0.0215819990986591,0.235084206234083,-0.0482396648970315,0,0,-0.341930355542018,0,0.0677314085379025,-0.0183071487032932,0.177919836311715,-0.316013341507926,0.227444400872953,0.088442925698678,0.605513708793745,0,0,0.0465143542734317,0,0.11027348387492,0,0.0677314085379025,0.013887111070461,0,0,0,0.303769982450707,0.134079598777948,0,0,0,0,0.0338657042689512,0,0.0691755456830903,0.109501547728321,0.171876574536228,0,-0.145231742509567,0,0.177919836311715,0,0,0,0.0695830183223686,0,0.0677314085379025,1.10918603988015,0,-0.12301741567642,0.0338657042689512,0,0,0.0519511405508114,0.213667620646894,0.252603695245602,0,0.0460571298140833,0,0,0,0,-0.0184095812513088,0,0,0.0338657042689512,0.063155445419109,-0.057730457053664,0.1845655563246,0,0,0,-0.27695440160179,0,0,0,0.0677314085379025,-0.0763944685755042,0,0.224042120238607,0.61626035496525,0,-0.221322491727803,-0.0815818795468414,0,0.017537499923618,-0.0198363268448536,0.369362530807888,0,0.303769982450707,-0.261347131789888,0,0.0677314085379025,0.120402785713773,0.0439406678725521,0.126310890838218,0,0,0,0,0,0.177919836311715,0,-0.0880036215615373,0.227920128670163,0,0,0,0,0,0,0.224042120238607,0,0,0,0.0079148329130454,0.246518085981648,0.429391023200369,0,0,0,0,0,0,-0.0241060230789031,-0.298460658925715,0,0,0.175194338239201,0,0,0.0677314085379025,0,0,0.076551100258001,0,0,0.126310890838218,0.0118722301691201,0,-0.0969923612426051,0,0,0,0,-0.497075712615981,0,0,0.123863792306837,0,0.0677314085379025,0,0,0,0,0.1227540990051,0.0546693319319209,0,0,0.0325839360760147,0,0,0.00299180480277063,-0.0452851908468268,0,0.0677314085379025,0,0,0,0,0.0273217196388848,-0.0507911779674831,0,0,0,0,1.4164611510468,0,0,0,0.375974357570552,0,-0.0925866215484835,0,0,0.126310890838218,0,0.0677314085379025,0.177919836311715,0,0,0,0,0.177919836311715,0.0338657042689512,0,0,0,0,0,0,0.132866522476414,0,0,0.835497245247993,0,0.212421377743645,-0.0394314892742915,0,0,0.26983144608525,0,0,0,0,0,0,0.120544567196827,0,0,0,0,0,0,0,0,0,0.0677314085379025,0,0,0,0,0,0,0,0,0.126310890838218,0,0,0,0,0,0.200612962250175,0.159879777809309,0,0,0,0,0.770447976631932,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0.0677314085379025,0,0.08789671581911,0,0.247115465355247,0.719415077253899,-0.0436686288584303,0,0,0,0.0576354876368485,0.526709904752676,0,0,0,0.557169348252721,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 56: | Line 81: | ||
|rna_tube_id=155B9 | |rna_tube_id=155B9 | ||
|rna_weight_ug=10.2 | |rna_weight_ug=10.2 | ||
|rnaseq_library_id=SRhi10009.ACAGTG | |||
|sample_age=3 year old child | |sample_age=3 year old child | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition=nuclear RNA | |sample_experimental_condition=nuclear RNA | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.08332574696628e-214!GO:0043226;organelle;1.4450419320333e-181!GO:0043229;intracellular organelle;2.80609954143526e-181!GO:0043231;intracellular membrane-bound organelle;6.82365407713503e-174!GO:0043227;membrane-bound organelle;1.29963738828333e-173!GO:0005737;cytoplasm;1.62008125057432e-148!GO:0044422;organelle part;1.81252025931866e-137!GO:0044446;intracellular organelle part;5.53992476622581e-136!GO:0044444;cytoplasmic part;1.95390150999432e-106!GO:0043170;macromolecule metabolic process;3.25574996401366e-85!GO:0044238;primary metabolic process;3.33740158232681e-85!GO:0032991;macromolecular complex;1.66248087131911e-83!GO:0044237;cellular metabolic process;9.43599994888733e-81!GO:0005634;nucleus;4.1222960369058e-80!GO:0005515;protein binding;2.6626807550445e-79!GO:0044428;nuclear part;3.16334237812594e-75!GO:0043233;organelle lumen;5.26220342558219e-67!GO:0031974;membrane-enclosed lumen;5.26220342558219e-67!GO:0003723;RNA binding;1.15845123434025e-63!GO:0030529;ribonucleoprotein complex;7.44951881145171e-62!GO:0016043;cellular component organization and biogenesis;9.71763454510337e-56!GO:0043283;biopolymer metabolic process;2.19605555614013e-50!GO:0019538;protein metabolic process;2.12663291726914e-46!GO:0006396;RNA processing;3.21643001885165e-46!GO:0043234;protein complex;4.67999926316605e-45!GO:0031981;nuclear lumen;1.13198613966423e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.45126428873044e-43!GO:0031090;organelle membrane;1.04840320264387e-42!GO:0033036;macromolecule localization;3.06241194663801e-42!GO:0015031;protein transport;3.95812490350233e-41!GO:0044260;cellular macromolecule metabolic process;3.60461734502839e-39!GO:0044267;cellular protein metabolic process;6.80694799392863e-39!GO:0010467;gene expression;1.98178106324977e-38!GO:0008104;protein localization;2.84904582071396e-38!GO:0045184;establishment of protein localization;1.13743681872098e-37!GO:0043228;non-membrane-bound organelle;9.9866042590173e-37!GO:0043232;intracellular non-membrane-bound organelle;9.9866042590173e-37!GO:0016071;mRNA metabolic process;1.10886739711268e-36!GO:0006996;organelle organization and biogenesis;1.44646290249915e-36!GO:0046907;intracellular transport;2.53798026431554e-36!GO:0006259;DNA metabolic process;1.67546020108914e-35!GO:0006412;translation;6.11060653736637e-35!GO:0005739;mitochondrion;7.33335870564862e-34!GO:0065003;macromolecular complex assembly;1.40330318320392e-32!GO:0005840;ribosome;4.12757133441559e-32!GO:0006397;mRNA processing;6.13574925683245e-32!GO:0000166;nucleotide binding;7.1195788462829e-32!GO:0008380;RNA splicing;2.43484822652638e-31!GO:0022607;cellular component assembly;8.31172268440181e-31!GO:0006886;intracellular protein transport;5.3857832692498e-30!GO:0007049;cell cycle;2.09418598017634e-29!GO:0031967;organelle envelope;1.36218846401216e-28!GO:0003676;nucleic acid binding;1.37949331426147e-28!GO:0009059;macromolecule biosynthetic process;2.10069626632612e-28!GO:0031975;envelope;2.87113859169264e-28!GO:0003735;structural constituent of ribosome;9.52797899125961e-28!GO:0005829;cytosol;2.4300754543202e-27!GO:0005654;nucleoplasm;2.56391637139274e-27!GO:0009058;biosynthetic process;1.01587829917598e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.66034762015173e-25!GO:0016462;pyrophosphatase activity;4.41577513511276e-24!GO:0033279;ribosomal subunit;4.41577513511276e-24!GO:0017111;nucleoside-triphosphatase activity;6.6074043265519e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.31884133572846e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;1.11085436564664e-23!GO:0044249;cellular biosynthetic process;1.15561811878327e-23!GO:0012505;endomembrane system;1.64906214591135e-23!GO:0044429;mitochondrial part;2.94407216412126e-23!GO:0022402;cell cycle process;3.07535858166638e-23!GO:0005524;ATP binding;3.19670754141362e-23!GO:0017076;purine nucleotide binding;5.74271378455892e-23!GO:0051641;cellular localization;6.79377161291633e-23!GO:0005783;endoplasmic reticulum;6.90731999503694e-23!GO:0032553;ribonucleotide binding;8.09435696735249e-23!GO:0032555;purine ribonucleotide binding;8.09435696735249e-23!GO:0051649;establishment of cellular localization;8.28281581554062e-23!GO:0032559;adenyl ribonucleotide binding;1.75226529218025e-22!GO:0005681;spliceosome;2.23802904302998e-22!GO:0030554;adenyl nucleotide binding;2.40537943002765e-22!GO:0000278;mitotic cell cycle;2.49910515073894e-22!GO:0006974;response to DNA damage stimulus;1.83382498215389e-21!GO:0044451;nucleoplasm part;2.37799247260074e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.17196730993046e-21!GO:0044432;endoplasmic reticulum part;2.71763766840587e-20!GO:0016070;RNA metabolic process;3.01367968161088e-20!GO:0006457;protein folding;2.0032301509543e-18!GO:0016874;ligase activity;2.33422442921892e-18!GO:0048770;pigment granule;2.9801275307735e-18!GO:0042470;melanosome;2.9801275307735e-18!GO:0006281;DNA repair;4.56715335424032e-18!GO:0005694;chromosome;5.27607639386087e-18!GO:0000087;M phase of mitotic cell cycle;1.26743906498615e-17!GO:0022403;cell cycle phase;1.35028272011375e-17!GO:0007067;mitosis;2.06136755598576e-17!GO:0005730;nucleolus;6.15667538529457e-17!GO:0051301;cell division;3.43334303870743e-16!GO:0005635;nuclear envelope;4.71688960156918e-16!GO:0051276;chromosome organization and biogenesis;6.68602414675062e-16!GO:0044445;cytosolic part;6.68612995380645e-16!GO:0031965;nuclear membrane;8.75464525736132e-16!GO:0005794;Golgi apparatus;1.30014404644698e-15!GO:0009719;response to endogenous stimulus;1.30363712397815e-15!GO:0016887;ATPase activity;1.55777281751433e-15!GO:0008134;transcription factor binding;2.22592827209574e-15!GO:0042623;ATPase activity, coupled;4.48799031474448e-15!GO:0022618;protein-RNA complex assembly;4.86206866586889e-15!GO:0006260;DNA replication;5.41893111626028e-15!GO:0044427;chromosomal part;5.51684362164999e-15!GO:0044453;nuclear membrane part;5.92846992828871e-15!GO:0008135;translation factor activity, nucleic acid binding;6.01353294045396e-15!GO:0004386;helicase activity;1.23691676915917e-14!GO:0043285;biopolymer catabolic process;1.4304413470573e-14!GO:0006512;ubiquitin cycle;1.73986181148386e-14!GO:0000279;M phase;1.87709719031558e-14!GO:0005740;mitochondrial envelope;3.04437183976228e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;3.27750024275643e-14!GO:0048193;Golgi vesicle transport;5.04766201439075e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.15786100726461e-14!GO:0019866;organelle inner membrane;5.76363397464028e-14!GO:0006511;ubiquitin-dependent protein catabolic process;5.78219110372315e-14!GO:0019941;modification-dependent protein catabolic process;7.31932426383606e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.31932426383606e-14!GO:0044257;cellular protein catabolic process;9.21061996643305e-14!GO:0030163;protein catabolic process;1.0144914115521e-13!GO:0031966;mitochondrial membrane;1.21913642753812e-13!GO:0006605;protein targeting;1.42598573863713e-13!GO:0044265;cellular macromolecule catabolic process;1.56582453104684e-13!GO:0005789;endoplasmic reticulum membrane;2.61940572227742e-13!GO:0051082;unfolded protein binding;3.77880933042459e-13!GO:0006119;oxidative phosphorylation;4.56549199646586e-13!GO:0005793;ER-Golgi intermediate compartment;6.74849989694318e-13!GO:0015935;small ribosomal subunit;8.26687530799007e-13!GO:0009057;macromolecule catabolic process;9.17325923163909e-13!GO:0003743;translation initiation factor activity;1.25080989013442e-12!GO:0043412;biopolymer modification;1.37730106282355e-12!GO:0000502;proteasome complex (sensu Eukaryota);3.42005901505222e-12!GO:0016604;nuclear body;5.41235873809747e-12!GO:0005743;mitochondrial inner membrane;6.06109998032796e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;6.09784897763705e-12!GO:0015630;microtubule cytoskeleton;6.50144844609851e-12!GO:0015934;large ribosomal subunit;7.51430644300137e-12!GO:0008026;ATP-dependent helicase activity;1.05774821005932e-11!GO:0005643;nuclear pore;1.17466554302538e-11!GO:0006913;nucleocytoplasmic transport;1.41787902508001e-11!GO:0016192;vesicle-mediated transport;1.53514184214993e-11!GO:0031980;mitochondrial lumen;1.67750576129125e-11!GO:0005759;mitochondrial matrix;1.67750576129125e-11!GO:0051726;regulation of cell cycle;1.74773254676334e-11!GO:0006323;DNA packaging;1.92877864030947e-11!GO:0000074;regulation of progression through cell cycle;2.08495843603656e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.22862836487269e-11!GO:0006461;protein complex assembly;2.76436507695265e-11!GO:0051169;nuclear transport;2.79710486163906e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.21318308992631e-11!GO:0000375;RNA splicing, via transesterification reactions;3.21318308992631e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.21318308992631e-11!GO:0042254;ribosome biogenesis and assembly;7.6131729348229e-11!GO:0006464;protein modification process;9.07032608167821e-11!GO:0003712;transcription cofactor activity;9.24639593122466e-11!GO:0006403;RNA localization;1.30412898119571e-10!GO:0016607;nuclear speck;1.73679034606709e-10!GO:0006399;tRNA metabolic process;1.73679034606709e-10!GO:0050657;nucleic acid transport;1.8939148057445e-10!GO:0051236;establishment of RNA localization;1.8939148057445e-10!GO:0050658;RNA transport;1.8939148057445e-10!GO:0044455;mitochondrial membrane part;2.21711550869212e-10!GO:0005788;endoplasmic reticulum lumen;2.21711550869212e-10!GO:0008565;protein transporter activity;2.66487912565153e-10!GO:0006413;translational initiation;3.37909195722817e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.74431104305538e-10!GO:0046930;pore complex;7.76543550759958e-10!GO:0044248;cellular catabolic process;7.96803838483279e-10!GO:0005819;spindle;1.34811425037733e-09!GO:0050794;regulation of cellular process;1.83761487035125e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.28217780211058e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.28217780211058e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.28217780211058e-09!GO:0051186;cofactor metabolic process;2.46349687835322e-09!GO:0043038;amino acid activation;2.49020698457156e-09!GO:0006418;tRNA aminoacylation for protein translation;2.49020698457156e-09!GO:0043039;tRNA aminoacylation;2.49020698457156e-09!GO:0043687;post-translational protein modification;2.57683474690278e-09!GO:0005815;microtubule organizing center;6.22428489497932e-09!GO:0005813;centrosome;6.75579325436136e-09!GO:0043566;structure-specific DNA binding;8.12381568192287e-09!GO:0006446;regulation of translational initiation;8.17896527742996e-09!GO:0051028;mRNA transport;8.72354371762602e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.62247567267725e-09!GO:0065002;intracellular protein transport across a membrane;1.12595229212515e-08!GO:0008639;small protein conjugating enzyme activity;1.12595229212515e-08!GO:0004842;ubiquitin-protein ligase activity;1.27480848068618e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.38022131444401e-08!GO:0005746;mitochondrial respiratory chain;1.43808207698626e-08!GO:0019787;small conjugating protein ligase activity;2.46771511587669e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.06451029812538e-08!GO:0006366;transcription from RNA polymerase II promoter;3.25181688433472e-08!GO:0006333;chromatin assembly or disassembly;3.49239324252596e-08!GO:0065004;protein-DNA complex assembly;3.74115076302222e-08!GO:0009259;ribonucleotide metabolic process;4.39930454526886e-08!GO:0007010;cytoskeleton organization and biogenesis;5.07452534102267e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.32976627190567e-08!GO:0000785;chromatin;5.41794495748974e-08!GO:0016787;hydrolase activity;8.8201223882351e-08!GO:0016568;chromatin modification;9.98009112704105e-08!GO:0000775;chromosome, pericentric region;1.02387273639827e-07!GO:0048523;negative regulation of cellular process;1.11834634137028e-07!GO:0044431;Golgi apparatus part;1.4824509586029e-07!GO:0050136;NADH dehydrogenase (quinone) activity;1.60717092729018e-07!GO:0003954;NADH dehydrogenase activity;1.60717092729018e-07!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.60717092729018e-07!GO:0030120;vesicle coat;1.63072520600104e-07!GO:0030662;coated vesicle membrane;1.63072520600104e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.73906336191948e-07!GO:0006163;purine nucleotide metabolic process;1.98757573168617e-07!GO:0003697;single-stranded DNA binding;2.15341928162751e-07!GO:0006732;coenzyme metabolic process;2.25605350001352e-07!GO:0017038;protein import;3.38816256598603e-07!GO:0007051;spindle organization and biogenesis;3.67889764163718e-07!GO:0016881;acid-amino acid ligase activity;3.70575770204999e-07!GO:0048475;coated membrane;4.01192025731308e-07!GO:0030117;membrane coat;4.01192025731308e-07!GO:0009060;aerobic respiration;4.42035097100648e-07!GO:0009260;ribonucleotide biosynthetic process;4.94858539122422e-07!GO:0009150;purine ribonucleotide metabolic process;4.94858539122422e-07!GO:0006164;purine nucleotide biosynthetic process;6.45310455868579e-07!GO:0006261;DNA-dependent DNA replication;7.51413587967976e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.86715011426506e-07!GO:0005768;endosome;9.72738077092321e-07!GO:0012501;programmed cell death;1.22324718014438e-06!GO:0006364;rRNA processing;1.26894829998164e-06!GO:0051325;interphase;1.30458998885227e-06!GO:0031324;negative regulation of cellular metabolic process;1.35347832710197e-06!GO:0042775;organelle ATP synthesis coupled electron transport;1.38716225235478e-06!GO:0042773;ATP synthesis coupled electron transport;1.38716225235478e-06!GO:0045333;cellular respiration;1.48374193595941e-06!GO:0043623;cellular protein complex assembly;1.50827815838975e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.53065689227293e-06!GO:0016564;transcription repressor activity;1.54912919163645e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.66242375516862e-06!GO:0006915;apoptosis;1.66242375516862e-06!GO:0051329;interphase of mitotic cell cycle;1.73364734354323e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.85127597563493e-06!GO:0005761;mitochondrial ribosome;1.96195263693519e-06!GO:0000313;organellar ribosome;1.96195263693519e-06!GO:0016363;nuclear matrix;2.10488855829808e-06!GO:0048519;negative regulation of biological process;2.27679968451682e-06!GO:0051170;nuclear import;2.2987189588632e-06!GO:0030964;NADH dehydrogenase complex (quinone);2.2987189588632e-06!GO:0045271;respiratory chain complex I;2.2987189588632e-06!GO:0005747;mitochondrial respiratory chain complex I;2.2987189588632e-06!GO:0050789;regulation of biological process;2.2987189588632e-06!GO:0006099;tricarboxylic acid cycle;2.41538307925742e-06!GO:0046356;acetyl-CoA catabolic process;2.41538307925742e-06!GO:0016740;transferase activity;2.66108506055403e-06!GO:0016072;rRNA metabolic process;3.04985310086935e-06!GO:0000151;ubiquitin ligase complex;3.04985310086935e-06!GO:0003724;RNA helicase activity;3.11292496018023e-06!GO:0005667;transcription factor complex;3.35224785313123e-06!GO:0005798;Golgi-associated vesicle;3.37839693620536e-06!GO:0008219;cell death;3.42381491511135e-06!GO:0016265;death;3.42381491511135e-06!GO:0000075;cell cycle checkpoint;3.54363630805173e-06!GO:0003714;transcription corepressor activity;3.68960101758271e-06!GO:0006606;protein import into nucleus;3.69423593951426e-06!GO:0051187;cofactor catabolic process;3.72339288229014e-06!GO:0009109;coenzyme catabolic process;3.86059241333125e-06!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.86473946519871e-06!GO:0009199;ribonucleoside triphosphate metabolic process;4.06496554889304e-06!GO:0051789;response to protein stimulus;4.07454876216736e-06!GO:0006986;response to unfolded protein;4.07454876216736e-06!GO:0006334;nucleosome assembly;4.35173704036134e-06!GO:0008094;DNA-dependent ATPase activity;4.52145938451985e-06!GO:0015986;ATP synthesis coupled proton transport;5.10664829915011e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.10664829915011e-06!GO:0009892;negative regulation of metabolic process;5.15418993955216e-06!GO:0009141;nucleoside triphosphate metabolic process;5.63340869213717e-06!GO:0009056;catabolic process;6.13642059832829e-06!GO:0031497;chromatin assembly;7.14253724115619e-06!GO:0019899;enzyme binding;7.48395922833791e-06!GO:0006613;cotranslational protein targeting to membrane;7.56500030674148e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.60945343087208e-06!GO:0006084;acetyl-CoA metabolic process;7.61131300548229e-06!GO:0005773;vacuole;7.72664740806544e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.85619828329694e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.12005331376705e-06!GO:0009144;purine nucleoside triphosphate metabolic process;8.12005331376705e-06!GO:0019829;cation-transporting ATPase activity;8.70476582600108e-06!GO:0046034;ATP metabolic process;9.58766907057073e-06!GO:0032446;protein modification by small protein conjugation;1.0229228147206e-05!GO:0008092;cytoskeletal protein binding;1.09239001819046e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.20341302564231e-05!GO:0000139;Golgi membrane;1.2141911458403e-05!GO:0019222;regulation of metabolic process;1.28613433282856e-05!GO:0003690;double-stranded DNA binding;1.42056460433164e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.64463822743378e-05!GO:0016567;protein ubiquitination;1.6562857807729e-05!GO:0000776;kinetochore;1.75361651916716e-05!GO:0006310;DNA recombination;1.92417500806032e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.9471740501769e-05!GO:0045786;negative regulation of progression through cell cycle;2.14164157580465e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.20938624850203e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.2286199154519e-05!GO:0030029;actin filament-based process;2.30569485839592e-05!GO:0003924;GTPase activity;2.42732579590063e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.57743800863925e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.57743800863925e-05!GO:0051246;regulation of protein metabolic process;2.58276117206341e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.58276117206341e-05!GO:0044440;endosomal part;2.61668116964456e-05!GO:0010008;endosome membrane;2.61668116964456e-05!GO:0000323;lytic vacuole;2.80715247503179e-05!GO:0005764;lysosome;2.80715247503179e-05!GO:0006302;double-strand break repair;2.84144113427579e-05!GO:0031252;leading edge;2.87915163929663e-05!GO:0030867;rough endoplasmic reticulum membrane;2.88859503724292e-05!GO:0031988;membrane-bound vesicle;2.91548225261402e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.37019202691871e-05!GO:0016779;nucleotidyltransferase activity;3.90116490844152e-05!GO:0016859;cis-trans isomerase activity;4.01201090673134e-05!GO:0003713;transcription coactivator activity;4.87762895905853e-05!GO:0016563;transcription activator activity;5.26584639006388e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.2691459674315e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.2691459674315e-05!GO:0009055;electron carrier activity;5.49230899539489e-05!GO:0005874;microtubule;5.55671924241882e-05!GO:0051168;nuclear export;5.60341640535767e-05!GO:0006754;ATP biosynthetic process;5.80747896550405e-05!GO:0006753;nucleoside phosphate metabolic process;5.80747896550405e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.00511834384912e-05!GO:0008654;phospholipid biosynthetic process;6.25696376761423e-05!GO:0031982;vesicle;6.39545005410861e-05!GO:0015078;hydrogen ion transmembrane transporter activity;6.39545005410861e-05!GO:0003678;DNA helicase activity;6.39545005410861e-05!GO:0008361;regulation of cell size;6.90767521761771e-05!GO:0031410;cytoplasmic vesicle;7.47565691765872e-05!GO:0016469;proton-transporting two-sector ATPase complex;7.65677325353866e-05!GO:0007059;chromosome segregation;7.65677325353866e-05!GO:0006752;group transfer coenzyme metabolic process;8.03327878796685e-05!GO:0000059;protein import into nucleus, docking;8.033653657392e-05!GO:0000245;spliceosome assembly;8.47513137750017e-05!GO:0005905;coated pit;8.67761352764145e-05!GO:0006793;phosphorus metabolic process;8.77072801844856e-05!GO:0006796;phosphate metabolic process;8.77072801844856e-05!GO:0016310;phosphorylation;8.87344564102446e-05!GO:0016049;cell growth;9.11221890310889e-05!GO:0030532;small nuclear ribonucleoprotein complex;9.88768156816756e-05!GO:0016853;isomerase activity;0.000103941555576765!GO:0007052;mitotic spindle organization and biogenesis;0.000104272497056627!GO:0005770;late endosome;0.000128389867249148!GO:0005657;replication fork;0.000131762265915703!GO:0006612;protein targeting to membrane;0.000133790569345105!GO:0008186;RNA-dependent ATPase activity;0.000137573050785895!GO:0016481;negative regulation of transcription;0.00015595422692185!GO:0009117;nucleotide metabolic process;0.000156946828594678!GO:0051188;cofactor biosynthetic process;0.000168898231428016!GO:0033116;ER-Golgi intermediate compartment membrane;0.000197321448225281!GO:0004576;oligosaccharyl transferase activity;0.000201001508882992!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000253099328924326!GO:0045259;proton-transporting ATP synthase complex;0.000269542182032058!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000284580673746491!GO:0051052;regulation of DNA metabolic process;0.000291137950280866!GO:0030133;transport vesicle;0.000292914829922041!GO:0008250;oligosaccharyl transferase complex;0.000296535532233269!GO:0006916;anti-apoptosis;0.000298669810160767!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000321226648673794!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000324990605298259!GO:0005769;early endosome;0.000335725778435288!GO:0051427;hormone receptor binding;0.000340982889893067!GO:0003682;chromatin binding;0.00034632459645946!GO:0007093;mitotic cell cycle checkpoint;0.000351712646269813!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0003915443052722!GO:0015399;primary active transmembrane transporter activity;0.0003915443052722!GO:0001558;regulation of cell growth;0.000408968507591543!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000412255220140285!GO:0004004;ATP-dependent RNA helicase activity;0.000420855226745758!GO:0005839;proteasome core complex (sensu Eukaryota);0.000447513293390201!GO:0065007;biological regulation;0.000463944100283946!GO:0005876;spindle microtubule;0.000504154585577961!GO:0000922;spindle pole;0.000509796838827296!GO:0042981;regulation of apoptosis;0.000561770466838275!GO:0031968;organelle outer membrane;0.000589913695302936!GO:0035257;nuclear hormone receptor binding;0.000608463986288929!GO:0019867;outer membrane;0.000632237036630917!GO:0043067;regulation of programmed cell death;0.000638741175975117!GO:0046489;phosphoinositide biosynthetic process;0.000661667339105849!GO:0003684;damaged DNA binding;0.000697167129621244!GO:0030663;COPI coated vesicle membrane;0.000697167129621244!GO:0030126;COPI vesicle coat;0.000697167129621244!GO:0005791;rough endoplasmic reticulum;0.000718546837080159!GO:0005885;Arp2/3 protein complex;0.000749275285463681!GO:0006891;intra-Golgi vesicle-mediated transport;0.000763807420429059!GO:0015631;tubulin binding;0.000769863254988837!GO:0030134;ER to Golgi transport vesicle;0.000795473729632275!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000796550440121737!GO:0043021;ribonucleoprotein binding;0.000807424855991418!GO:0004674;protein serine/threonine kinase activity;0.000840531420509622!GO:0031323;regulation of cellular metabolic process;0.000860744137881489!GO:0003729;mRNA binding;0.00100105738276568!GO:0007088;regulation of mitosis;0.00102826525537412!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00103742286347267!GO:0018196;peptidyl-asparagine modification;0.00104779861103346!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00104779861103346!GO:0043069;negative regulation of programmed cell death;0.00108068620130659!GO:0046474;glycerophospholipid biosynthetic process;0.00111112380780633!GO:0015980;energy derivation by oxidation of organic compounds;0.0012270465310173!GO:0005048;signal sequence binding;0.00123615347656486!GO:0009108;coenzyme biosynthetic process;0.001309619336951!GO:0030127;COPII vesicle coat;0.00131301299645955!GO:0012507;ER to Golgi transport vesicle membrane;0.00131301299645955!GO:0004298;threonine endopeptidase activity;0.00132292442534313!GO:0051252;regulation of RNA metabolic process;0.00132343974758858!GO:0019843;rRNA binding;0.00135694317303579!GO:0031124;mRNA 3'-end processing;0.00138750724796034!GO:0043066;negative regulation of apoptosis;0.00138750724796034!GO:0007017;microtubule-based process;0.00146320654246666!GO:0000910;cytokinesis;0.00155293863119786!GO:0008022;protein C-terminus binding;0.00170681202061247!GO:0044452;nucleolar part;0.00174440979415504!GO:0005637;nuclear inner membrane;0.00183784319131311!GO:0004527;exonuclease activity;0.00187323889644858!GO:0030137;COPI-coated vesicle;0.00187752581201533!GO:0006402;mRNA catabolic process;0.00197823274442083!GO:0048471;perinuclear region of cytoplasm;0.00200593740422805!GO:0008047;enzyme activator activity;0.00219528447736867!GO:0004177;aminopeptidase activity;0.00221667786991187!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00229002778922326!GO:0007050;cell cycle arrest;0.00237062852920253!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00271921491610221!GO:0045454;cell redox homeostasis;0.00274181015047899!GO:0006414;translational elongation;0.00276772303160319!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00279358708959026!GO:0005856;cytoskeleton;0.0028222841838253!GO:0000786;nucleosome;0.00286568909956509!GO:0031123;RNA 3'-end processing;0.00291715307464374!GO:0048500;signal recognition particle;0.00303687308813268!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0030605113313434!GO:0006350;transcription;0.00306870448415379!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00310083005782667!GO:0030521;androgen receptor signaling pathway;0.00314467602309724!GO:0032508;DNA duplex unwinding;0.00324195543520656!GO:0032392;DNA geometric change;0.00324195543520656!GO:0043492;ATPase activity, coupled to movement of substances;0.00342273355928787!GO:0000082;G1/S transition of mitotic cell cycle;0.00342273355928787!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00357383414777381!GO:0030658;transport vesicle membrane;0.00358283393445809!GO:0008033;tRNA processing;0.00367914498973065!GO:0048522;positive regulation of cellular process;0.0036808758508244!GO:0030176;integral to endoplasmic reticulum membrane;0.00369352230951956!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00374913032111396!GO:0000049;tRNA binding;0.00388435298329228!GO:0003899;DNA-directed RNA polymerase activity;0.00389703506496571!GO:0043284;biopolymer biosynthetic process;0.00389703506496571!GO:0016197;endosome transport;0.00398862905751863!GO:0031072;heat shock protein binding;0.00402767632915383!GO:0019798;procollagen-proline dioxygenase activity;0.00403750126187865!GO:0005741;mitochondrial outer membrane;0.00416346224288745!GO:0051920;peroxiredoxin activity;0.0046526150495112!GO:0005525;GTP binding;0.00486341813862293!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.004895104040042!GO:0004003;ATP-dependent DNA helicase activity;0.00512849331587007!GO:0006497;protein amino acid lipidation;0.00514055324752649!GO:0006950;response to stress;0.00530150107186158!GO:0044262;cellular carbohydrate metabolic process;0.00532433846287823!GO:0000819;sister chromatid segregation;0.00541724885966111!GO:0009112;nucleobase metabolic process;0.00563103011399418!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00564270566163043!GO:0045047;protein targeting to ER;0.00564270566163043!GO:0003779;actin binding;0.00570506318100993!GO:0007243;protein kinase cascade;0.00576645013828534!GO:0001726;ruffle;0.00580554758812215!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00588957395986413!GO:0031543;peptidyl-proline dioxygenase activity;0.00594959939613152!GO:0030132;clathrin coat of coated pit;0.00599814234165709!GO:0042802;identical protein binding;0.00600664900608612!GO:0006268;DNA unwinding during replication;0.00616056005357558!GO:0000070;mitotic sister chromatid segregation;0.00619624659785502!GO:0006405;RNA export from nucleus;0.00668308598514576!GO:0006289;nucleotide-excision repair;0.00700222166845733!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00711088970668465!GO:0008312;7S RNA binding;0.00712361377845594!GO:0016491;oxidoreductase activity;0.00721605943842735!GO:0006650;glycerophospholipid metabolic process;0.00732447775015872!GO:0030118;clathrin coat;0.00737092488631047!GO:0007005;mitochondrion organization and biogenesis;0.00773385991329207!GO:0030660;Golgi-associated vesicle membrane;0.00782748304906924!GO:0017166;vinculin binding;0.00811920112758195!GO:0006506;GPI anchor biosynthetic process;0.00832421640420174!GO:0007040;lysosome organization and biogenesis;0.00837129765765005!GO:0006275;regulation of DNA replication;0.00841429037441303!GO:0003756;protein disulfide isomerase activity;0.00846894465137039!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00846894465137039!GO:0008139;nuclear localization sequence binding;0.00860847737610984!GO:0006505;GPI anchor metabolic process;0.00866756183911059!GO:0006383;transcription from RNA polymerase III promoter;0.00882484421095703!GO:0065009;regulation of a molecular function;0.00882484421095703!GO:0030384;phosphoinositide metabolic process;0.00890897356671445!GO:0032200;telomere organization and biogenesis;0.00911742029419418!GO:0000723;telomere maintenance;0.00911742029419418!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00959629902464507!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00981644291306166!GO:0006378;mRNA polyadenylation;0.00984308602240417!GO:0006401;RNA catabolic process;0.00996736632523658!GO:0010468;regulation of gene expression;0.0101875374653646!GO:0003746;translation elongation factor activity;0.0103512328059856!GO:0031418;L-ascorbic acid binding;0.0103708170331531!GO:0046467;membrane lipid biosynthetic process;0.0105599881819386!GO:0003923;GPI-anchor transamidase activity;0.0105706497700839!GO:0016255;attachment of GPI anchor to protein;0.0105706497700839!GO:0042765;GPI-anchor transamidase complex;0.0105706497700839!GO:0006352;transcription initiation;0.01057229326748!GO:0001527;microfibril;0.0106422586808045!GO:0035258;steroid hormone receptor binding;0.010832194805464!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0110353491137706!GO:0005096;GTPase activator activity;0.0110353491137706!GO:0016584;nucleosome positioning;0.0112514398459797!GO:0044420;extracellular matrix part;0.0117006685317948!GO:0000792;heterochromatin;0.0117977420105063!GO:0045892;negative regulation of transcription, DNA-dependent;0.0118695221837579!GO:0040008;regulation of growth;0.0120645421152096!GO:0003677;DNA binding;0.0123115800019166!GO:0007033;vacuole organization and biogenesis;0.012536549880627!GO:0009165;nucleotide biosynthetic process;0.012536549880627!GO:0007160;cell-matrix adhesion;0.012536549880627!GO:0006338;chromatin remodeling;0.0126900870185104!GO:0005862;muscle thin filament tropomyosin;0.012958612345619!GO:0016251;general RNA polymerase II transcription factor activity;0.0130411581832247!GO:0042158;lipoprotein biosynthetic process;0.0134696709143847!GO:0006509;membrane protein ectodomain proteolysis;0.014466359291843!GO:0033619;membrane protein proteolysis;0.014466359291843!GO:0040029;regulation of gene expression, epigenetic;0.0146112772302872!GO:0005832;chaperonin-containing T-complex;0.0148474731203699!GO:0008180;signalosome;0.0150806391526507!GO:0006892;post-Golgi vesicle-mediated transport;0.0156521179677028!GO:0031901;early endosome membrane;0.0156658442381179!GO:0046519;sphingoid metabolic process;0.0157644911658494!GO:0006611;protein export from nucleus;0.0157644911658494!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0157644911658494!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0157644911658494!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0157644911658494!GO:0031589;cell-substrate adhesion;0.0158461116178832!GO:0000152;nuclear ubiquitin ligase complex;0.0160419094394223!GO:0051128;regulation of cellular component organization and biogenesis;0.0163359298039344!GO:0000209;protein polyubiquitination;0.0163908566484866!GO:0003711;transcription elongation regulator activity;0.016431138245571!GO:0046483;heterocycle metabolic process;0.0171179485276963!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0173086759787527!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0173086759787527!GO:0032984;macromolecular complex disassembly;0.0177559669201569!GO:0043624;cellular protein complex disassembly;0.0180301079913285!GO:0030518;steroid hormone receptor signaling pathway;0.0180580513287494!GO:0050662;coenzyme binding;0.0181031919209122!GO:0051539;4 iron, 4 sulfur cluster binding;0.018196633780632!GO:0032561;guanyl ribonucleotide binding;0.0185510788456357!GO:0019001;guanyl nucleotide binding;0.0185510788456357!GO:0030433;ER-associated protein catabolic process;0.0188646140582233!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0188646140582233!GO:0007030;Golgi organization and biogenesis;0.0188852958152367!GO:0006607;NLS-bearing substrate import into nucleus;0.02024827026269!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0204538074003043!GO:0030027;lamellipodium;0.0209464824364824!GO:0016044;membrane organization and biogenesis;0.0210888664140984!GO:0016408;C-acyltransferase activity;0.021138210528812!GO:0004518;nuclease activity;0.0212749947445289!GO:0007034;vacuolar transport;0.0217923816763809!GO:0031529;ruffle organization and biogenesis;0.0218741193733122!GO:0030032;lamellipodium biogenesis;0.0222403338399556!GO:0045893;positive regulation of transcription, DNA-dependent;0.0226377447365632!GO:0003702;RNA polymerase II transcription factor activity;0.0229475721235676!GO:0004248;stromelysin 1 activity;0.0229475721235676!GO:0008168;methyltransferase activity;0.0229475721235676!GO:0000339;RNA cap binding;0.023091950931192!GO:0006541;glutamine metabolic process;0.0231624356145897!GO:0000018;regulation of DNA recombination;0.0231624356145897!GO:0043241;protein complex disassembly;0.0235680665485701!GO:0016741;transferase activity, transferring one-carbon groups;0.0235680665485701!GO:0000725;recombinational repair;0.0238171145766436!GO:0000724;double-strand break repair via homologous recombination;0.0238171145766436!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0241257928667989!GO:0031570;DNA integrity checkpoint;0.0241547692556136!GO:0016301;kinase activity;0.0244819637891462!GO:0005680;anaphase-promoting complex;0.0245711900100708!GO:0050681;androgen receptor binding;0.0247488251519356!GO:0051087;chaperone binding;0.0250042439573125!GO:0045045;secretory pathway;0.0259585583710944!GO:0043488;regulation of mRNA stability;0.0263377620518337!GO:0043487;regulation of RNA stability;0.0263377620518337!GO:0006376;mRNA splice site selection;0.0269055904029907!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0269055904029907!GO:0007041;lysosomal transport;0.0276834928750173!GO:0008017;microtubule binding;0.0276834928750173!GO:0032774;RNA biosynthetic process;0.0281187385499108!GO:0042770;DNA damage response, signal transduction;0.0281187385499108!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0285843237278015!GO:0008320;protein transmembrane transporter activity;0.0286861451712684!GO:0043631;RNA polyadenylation;0.0290043250506934!GO:0000781;chromosome, telomeric region;0.0292420591385189!GO:0031625;ubiquitin protein ligase binding;0.029281750125657!GO:0007346;regulation of progression through mitotic cell cycle;0.0294869508080398!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0306527469691679!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0306527469691679!GO:0008154;actin polymerization and/or depolymerization;0.0306527469691679!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.031212710389804!GO:0005774;vacuolar membrane;0.0317779173985333!GO:0000287;magnesium ion binding;0.0317836279517642!GO:0031577;spindle checkpoint;0.0317836279517642!GO:0006672;ceramide metabolic process;0.0317836279517642!GO:0006284;base-excision repair;0.0318060668988135!GO:0005762;mitochondrial large ribosomal subunit;0.0318060668988135!GO:0000315;organellar large ribosomal subunit;0.0318060668988135!GO:0005801;cis-Golgi network;0.0327991762244937!GO:0006351;transcription, DNA-dependent;0.0329425096250468!GO:0006144;purine base metabolic process;0.0330292048928301!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0331933607348762!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0332742907840415!GO:0030149;sphingolipid catabolic process;0.0332742907840415!GO:0008270;zinc ion binding;0.0332742907840415!GO:0006818;hydrogen transport;0.0333503360244895!GO:0005784;translocon complex;0.0337143033960071!GO:0015992;proton transport;0.0342493215223809!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0342493215223809!GO:0000118;histone deacetylase complex;0.0345403272958124!GO:0005869;dynactin complex;0.0345731937849051!GO:0031902;late endosome membrane;0.0347604162587183!GO:0005684;U2-dependent spliceosome;0.0352139702359704!GO:0007004;telomere maintenance via telomerase;0.03625921010621!GO:0006984;ER-nuclear signaling pathway;0.03625921010621!GO:0030659;cytoplasmic vesicle membrane;0.036678929445601!GO:0000030;mannosyltransferase activity;0.0369516001327142!GO:0005586;collagen type III;0.0370507933945521!GO:0008484;sulfuric ester hydrolase activity;0.0373480056465194!GO:0045941;positive regulation of transcription;0.0373576316894563!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0378440135060433!GO:0044450;microtubule organizing center part;0.038126249628843!GO:0005581;collagen;0.0383039400202657!GO:0035267;NuA4 histone acetyltransferase complex;0.0384839762539575!GO:0008234;cysteine-type peptidase activity;0.0390161093931021!GO:0030041;actin filament polymerization;0.0390379107174269!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0391691623719894!GO:0033043;regulation of organelle organization and biogenesis;0.0391691623719894!GO:0042393;histone binding;0.0392227438675571!GO:0004228;gelatinase A activity;0.0394429165003639!GO:0001955;blood vessel maturation;0.0394429165003639!GO:0022408;negative regulation of cell-cell adhesion;0.0396276721853457!GO:0000726;non-recombinational repair;0.0400337380096959!GO:0043022;ribosome binding;0.0401715964143078!GO:0046914;transition metal ion binding;0.0406384290779237!GO:0006213;pyrimidine nucleoside metabolic process;0.0406838595551429!GO:0050790;regulation of catalytic activity;0.0407759014472386!GO:0006379;mRNA cleavage;0.0409370654387874!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0409822221575672!GO:0004563;beta-N-acetylhexosaminidase activity;0.0411347426566465!GO:0008610;lipid biosynthetic process;0.0411451880959255!GO:0043414;biopolymer methylation;0.0413425977319374!GO:0009116;nucleoside metabolic process;0.0420153042718839!GO:0006091;generation of precursor metabolites and energy;0.0428941395711595!GO:0033673;negative regulation of kinase activity;0.0432214678673848!GO:0006469;negative regulation of protein kinase activity;0.0432214678673848!GO:0005938;cell cortex;0.0437966236114277!GO:0000077;DNA damage checkpoint;0.0441293456557057!GO:0046112;nucleobase biosynthetic process;0.0441293456557057!GO:0000314;organellar small ribosomal subunit;0.0452396051987049!GO:0005763;mitochondrial small ribosomal subunit;0.0452396051987049!GO:0051053;negative regulation of DNA metabolic process;0.0452505433332974!GO:0042585;germinal vesicle;0.0452505433332974!GO:0032259;methylation;0.0454443753725958!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0456882483749845!GO:0051271;negative regulation of cell motility;0.0457355385155617!GO:0005881;cytoplasmic microtubule;0.046646874672379!GO:0001725;stress fiber;0.0478073811002938!GO:0032432;actin filament bundle;0.0478073811002938!GO:0000086;G2/M transition of mitotic cell cycle;0.047946817684934!GO:0030119;AP-type membrane coat adaptor complex;0.0485075407029638!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0485594739143918!GO:0001952;regulation of cell-matrix adhesion;0.0486600847866583!GO:0000228;nuclear chromosome;0.0487223885016612!GO:0009967;positive regulation of signal transduction;0.0488041070320582!GO:0005875;microtubule associated complex;0.049065286152832!GO:0005595;collagen type XII;0.0491196665523886!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0493334338300795!GO:0051348;negative regulation of transferase activity;0.0498102918380978!GO:0019206;nucleoside kinase activity;0.0498347695082531 | |||
|sample_id=14302 | |sample_id=14302 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.70352351509;NKX3-1:2.19423753934;EN1,2:2.09405060962;TOPORS:2.05249817699;ALX4:2.03342984804;ZNF384:1.83461449249;HIF1A:1.74565650876;XBP1:1.56496051319;PITX1..3:1.48018603739;MYBL2:1.46590259521;FOXP1:1.38954441296;TFDP1:1.37753330902;ZNF238:1.35603636626;HMGA1,2:1.34410513826;GFI1:1.32955253911;TEAD1:1.32796729966;NKX3-2:1.32688215835;HSF1,2:1.31377881735;GZF1:1.26644751571;SRF:1.2408739926;HOX{A5,B5}:1.1851296749;EVI1:1.17098306409;GTF2A1,2:1.14781398213;GATA4:1.127936979;PRDM1:1.08603781724;GFI1B:1.04383434595;KLF4:1.03866715033;PAX8:1.01784720465;SOX17:0.979420690506;HOX{A6,A7,B6,B7}:0.977121937062;E2F1..5:0.951288937886;RXR{A,B,G}:0.944159525849;MTE{core}:0.940664727191;GCM1,2:0.921323370833;HOX{A4,D4}:0.901440321529;POU3F1..4:0.881452117626;AHR_ARNT_ARNT2:0.878528780453;MZF1:0.853610588544;ESR1:0.820502806933;MYB:0.807102209085;GTF2I:0.77133004179;PPARG:0.767973495963;STAT1,3:0.76420642071;XCPE1{core}:0.747941608517;UFEwm:0.747110524813;FOXL1:0.7463449756;TLX1..3_NFIC{dimer}:0.720916905832;ZIC1..3:0.719402866128;NKX6-1,2:0.701336673898;MAZ:0.665431979968;SMAD1..7,9:0.653577577081;NKX2-1,4:0.648487593322;ELK1,4_GABP{A,B1}:0.633361235011;TP53:0.573987461453;NR3C1:0.572014470695;NFATC1..3:0.56679709036;MAFB:0.550212284078;TFAP2B:0.536465857884;TAL1_TCF{3,4,12}:0.532569514228;NKX2-2,8:0.5295016603;DBP:0.521446812163;MED-1{core}:0.520415789074;NFY{A,B,C}:0.514799346777;YY1:0.507668229346;ZNF143:0.491614447676;NRF1:0.479022261223;NFE2L1:0.443307515582;POU1F1:0.437739707074;POU5F1:0.436255300792;GLI1..3:0.4182673028;PAX4:0.414455570354;FOX{I1,J2}:0.408732885976;EP300:0.406821828788;FOXN1:0.390895932769;BACH2:0.359618258997;HMX1:0.356362876101;HES1:0.356024435584;TBP:0.347864097511;TEF:0.340096768339;RXRA_VDR{dimer}:0.330934966522;SPZ1:0.327177063843;FOS_FOS{B,L1}_JUN{B,D}:0.323133217211;ALX1:0.307192432035;CREB1:0.302674576891;PAX3,7:0.290413232291;AIRE:0.273294702146;SOX5:0.210679360213;FOSL2:0.174767781762;NFE2L2:0.165480196878;CDC5L:0.145986480913;LHX3,4:0.128872070107;ZBTB16:0.125893641398;CEBPA,B_DDIT3:0.115774256226;ATF6:0.114233822786;HLF:0.105790420403;FOXA2:0.101064768562;RFX1:0.0999623595054;MEF2{A,B,C,D}:0.0980653922032;TLX2:0.0918964892255;NKX2-3_NKX2-5:0.0862608425374;RREB1:0.0826443968814;EBF1:0.0807016439319;FOXD3:0.0755361002146;ZBTB6:0.0675663608309;NFE2:0.0518515919845;HIC1:0.0478460536597;IKZF1:0.0404427506804;NANOG{mouse}:0.036870890382;SP1:0.0270277282751;TFAP4:0.0209498284994;ELF1,2,4:0.0139518998535;PRRX1,2:-0.00673951760799;SOX2:-0.0138145150841;TFAP2{A,C}:-0.0187195327916;EGR1..3:-0.0195056907009;LEF1_TCF7_TCF7L1,2:-0.0450949423457;ZFP161:-0.0519257562142;MYFfamily:-0.0646638411016;BPTF:-0.0760493641578;NR1H4:-0.0846648347956;VSX1,2:-0.096802677077;DMAP1_NCOR{1,2}_SMARC:-0.104952832323;SREBF1,2:-0.106679601885;ZNF148:-0.108226787597;ATF5_CREB3:-0.135672086569;T:-0.13971215641;PATZ1:-0.142221744712;SOX{8,9,10}:-0.146943746117;PDX1:-0.171986520084;ADNP_IRX_SIX_ZHX:-0.217688172819;PAX5:-0.233348342603;OCT4_SOX2{dimer}:-0.256024766277;NFIL3:-0.263748964942;PAX2:-0.268527692334;JUN:-0.28143173338;NFIX:-0.286934595792;IRF1,2:-0.299855482723;NHLH1,2:-0.301902748465;HNF1A:-0.305371760232;RFX2..5_RFXANK_RFXAP:-0.324529038983;BREu{core}:-0.325907154238;STAT2,4,6:-0.334893044865;ONECUT1,2:-0.3378324781;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.41669807785;ZNF423:-0.417371176147;ATF4:-0.423869117327;RUNX1..3:-0.428944498522;HOXA9_MEIS1:-0.44258010771;bHLH_family:-0.45204881078;TFCP2:-0.456532111286;TBX4,5:-0.468531222121;POU6F1:-0.476416085993;FOX{D1,D2}:-0.488298513541;SPI1:-0.488614934895;SPIB:-0.494047613334;NANOG:-0.495030042738;CUX2:-0.54319045937;FOXO1,3,4:-0.568778693732;CRX:-0.579767023592;MTF1:-0.580501327521;AR:-0.607793592046;ETS1,2:-0.613309890343;RBPJ:-0.61349964092;POU2F1..3:-0.668260066167;HAND1,2:-0.675025543171;PAX1,9:-0.696240479342;NFKB1_REL_RELA:-0.713583983522;CDX1,2,4:-0.714330854878;TGIF1:-0.715821756299;HNF4A_NR2F1,2:-0.728233349829;NR6A1:-0.730960565006;ATF2:-0.733114766224;ARID5B:-0.741037478436;IKZF2:-0.802318170935;REST:-0.834944889673;IRF7:-0.845031696999;FOXP3:-0.857780331527;FOXQ1:-0.894228102275;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.915203551771;GATA6:-0.98718556029;STAT5{A,B}:-1.10737812677;PBX1:-1.15209365084;NR5A1,2:-1.19856141685;FOXM1:-1.25580780188;SNAI1..3:-1.27496662624;ZEB1:-1.37051812453;LMO2:-1.42629959578;PAX6:-1.50432045777;RORA:-1.6244849389;ESRRA:-1.7875225255;FOX{F1,F2,J1}:-1.84020154824;MYOD1:-1.98238331001 | |top_motifs=HBP1_HMGB_SSRP1_UBTF:2.70352351509;NKX3-1:2.19423753934;EN1,2:2.09405060962;TOPORS:2.05249817699;ALX4:2.03342984804;ZNF384:1.83461449249;HIF1A:1.74565650876;XBP1:1.56496051319;PITX1..3:1.48018603739;MYBL2:1.46590259521;FOXP1:1.38954441296;TFDP1:1.37753330902;ZNF238:1.35603636626;HMGA1,2:1.34410513826;GFI1:1.32955253911;TEAD1:1.32796729966;NKX3-2:1.32688215835;HSF1,2:1.31377881735;GZF1:1.26644751571;SRF:1.2408739926;HOX{A5,B5}:1.1851296749;EVI1:1.17098306409;GTF2A1,2:1.14781398213;GATA4:1.127936979;PRDM1:1.08603781724;GFI1B:1.04383434595;KLF4:1.03866715033;PAX8:1.01784720465;SOX17:0.979420690506;HOX{A6,A7,B6,B7}:0.977121937062;E2F1..5:0.951288937886;RXR{A,B,G}:0.944159525849;MTE{core}:0.940664727191;GCM1,2:0.921323370833;HOX{A4,D4}:0.901440321529;POU3F1..4:0.881452117626;AHR_ARNT_ARNT2:0.878528780453;MZF1:0.853610588544;ESR1:0.820502806933;MYB:0.807102209085;GTF2I:0.77133004179;PPARG:0.767973495963;STAT1,3:0.76420642071;XCPE1{core}:0.747941608517;UFEwm:0.747110524813;FOXL1:0.7463449756;TLX1..3_NFIC{dimer}:0.720916905832;ZIC1..3:0.719402866128;NKX6-1,2:0.701336673898;MAZ:0.665431979968;SMAD1..7,9:0.653577577081;NKX2-1,4:0.648487593322;ELK1,4_GABP{A,B1}:0.633361235011;TP53:0.573987461453;NR3C1:0.572014470695;NFATC1..3:0.56679709036;MAFB:0.550212284078;TFAP2B:0.536465857884;TAL1_TCF{3,4,12}:0.532569514228;NKX2-2,8:0.5295016603;DBP:0.521446812163;MED-1{core}:0.520415789074;NFY{A,B,C}:0.514799346777;YY1:0.507668229346;ZNF143:0.491614447676;NRF1:0.479022261223;NFE2L1:0.443307515582;POU1F1:0.437739707074;POU5F1:0.436255300792;GLI1..3:0.4182673028;PAX4:0.414455570354;FOX{I1,J2}:0.408732885976;EP300:0.406821828788;FOXN1:0.390895932769;BACH2:0.359618258997;HMX1:0.356362876101;HES1:0.356024435584;TBP:0.347864097511;TEF:0.340096768339;RXRA_VDR{dimer}:0.330934966522;SPZ1:0.327177063843;FOS_FOS{B,L1}_JUN{B,D}:0.323133217211;ALX1:0.307192432035;CREB1:0.302674576891;PAX3,7:0.290413232291;AIRE:0.273294702146;SOX5:0.210679360213;FOSL2:0.174767781762;NFE2L2:0.165480196878;CDC5L:0.145986480913;LHX3,4:0.128872070107;ZBTB16:0.125893641398;CEBPA,B_DDIT3:0.115774256226;ATF6:0.114233822786;HLF:0.105790420403;FOXA2:0.101064768562;RFX1:0.0999623595054;MEF2{A,B,C,D}:0.0980653922032;TLX2:0.0918964892255;NKX2-3_NKX2-5:0.0862608425374;RREB1:0.0826443968814;EBF1:0.0807016439319;FOXD3:0.0755361002146;ZBTB6:0.0675663608309;NFE2:0.0518515919845;HIC1:0.0478460536597;IKZF1:0.0404427506804;NANOG{mouse}:0.036870890382;SP1:0.0270277282751;TFAP4:0.0209498284994;ELF1,2,4:0.0139518998535;PRRX1,2:-0.00673951760799;SOX2:-0.0138145150841;TFAP2{A,C}:-0.0187195327916;EGR1..3:-0.0195056907009;LEF1_TCF7_TCF7L1,2:-0.0450949423457;ZFP161:-0.0519257562142;MYFfamily:-0.0646638411016;BPTF:-0.0760493641578;NR1H4:-0.0846648347956;VSX1,2:-0.096802677077;DMAP1_NCOR{1,2}_SMARC:-0.104952832323;SREBF1,2:-0.106679601885;ZNF148:-0.108226787597;ATF5_CREB3:-0.135672086569;T:-0.13971215641;PATZ1:-0.142221744712;SOX{8,9,10}:-0.146943746117;PDX1:-0.171986520084;ADNP_IRX_SIX_ZHX:-0.217688172819;PAX5:-0.233348342603;OCT4_SOX2{dimer}:-0.256024766277;NFIL3:-0.263748964942;PAX2:-0.268527692334;JUN:-0.28143173338;NFIX:-0.286934595792;IRF1,2:-0.299855482723;NHLH1,2:-0.301902748465;HNF1A:-0.305371760232;RFX2..5_RFXANK_RFXAP:-0.324529038983;BREu{core}:-0.325907154238;STAT2,4,6:-0.334893044865;ONECUT1,2:-0.3378324781;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.41669807785;ZNF423:-0.417371176147;ATF4:-0.423869117327;RUNX1..3:-0.428944498522;HOXA9_MEIS1:-0.44258010771;bHLH_family:-0.45204881078;TFCP2:-0.456532111286;TBX4,5:-0.468531222121;POU6F1:-0.476416085993;FOX{D1,D2}:-0.488298513541;SPI1:-0.488614934895;SPIB:-0.494047613334;NANOG:-0.495030042738;CUX2:-0.54319045937;FOXO1,3,4:-0.568778693732;CRX:-0.579767023592;MTF1:-0.580501327521;AR:-0.607793592046;ETS1,2:-0.613309890343;RBPJ:-0.61349964092;POU2F1..3:-0.668260066167;HAND1,2:-0.675025543171;PAX1,9:-0.696240479342;NFKB1_REL_RELA:-0.713583983522;CDX1,2,4:-0.714330854878;TGIF1:-0.715821756299;HNF4A_NR2F1,2:-0.728233349829;NR6A1:-0.730960565006;ATF2:-0.733114766224;ARID5B:-0.741037478436;IKZF2:-0.802318170935;REST:-0.834944889673;IRF7:-0.845031696999;FOXP3:-0.857780331527;FOXQ1:-0.894228102275;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.915203551771;GATA6:-0.98718556029;STAT5{A,B}:-1.10737812677;PBX1:-1.15209365084;NR5A1,2:-1.19856141685;FOXM1:-1.25580780188;SNAI1..3:-1.27496662624;ZEB1:-1.37051812453;LMO2:-1.42629959578;PAX6:-1.50432045777;RORA:-1.6244849389;ESRRA:-1.7875225255;FOX{F1,F2,J1}:-1.84020154824;MYOD1:-1.98238331001 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14302-155B9;search_select_hide=table117:FF:14302-155B9 | |||
}} | }} | ||
Latest revision as of 19:05, 4 June 2020
| Name: | Fibroblast - skin normal, donor2 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12582 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12582
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12582
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.194 |
| 10 | 10 | 0.699 |
| 100 | 100 | 0.823 |
| 101 | 101 | 0.865 |
| 102 | 102 | 0.567 |
| 103 | 103 | 0.0114 |
| 104 | 104 | 0.747 |
| 105 | 105 | 0.34 |
| 106 | 106 | 0.033 |
| 107 | 107 | 0.698 |
| 108 | 108 | 0.877 |
| 109 | 109 | 0.0375 |
| 11 | 11 | 0.102 |
| 110 | 110 | 0.552 |
| 111 | 111 | 0.199 |
| 112 | 112 | 0.165 |
| 113 | 113 | 0.386 |
| 114 | 114 | 0.064 |
| 115 | 115 | 0.989 |
| 116 | 116 | 0.943 |
| 117 | 117 | 0.316 |
| 118 | 118 | 0.33 |
| 119 | 119 | 0.0927 |
| 12 | 12 | 0.758 |
| 120 | 120 | 0.0525 |
| 121 | 121 | 0.615 |
| 122 | 122 | 0.117 |
| 123 | 123 | 0.872 |
| 124 | 124 | 0.0874 |
| 125 | 125 | 0.811 |
| 126 | 126 | 0.073 |
| 127 | 127 | 0.129 |
| 128 | 128 | 0.0404 |
| 129 | 129 | 0.0604 |
| 13 | 13 | 0.761 |
| 130 | 130 | 0.816 |
| 131 | 131 | 0.194 |
| 132 | 132 | 0.57 |
| 133 | 133 | 0.711 |
| 134 | 134 | 0.825 |
| 135 | 135 | 0.898 |
| 136 | 136 | 0.235 |
| 137 | 137 | 0.692 |
| 138 | 138 | 0.255 |
| 139 | 139 | 0.00944 |
| 14 | 14 | 0.61 |
| 140 | 140 | 0.147 |
| 141 | 141 | 0.0765 |
| 142 | 142 | 0.244 |
| 143 | 143 | 0.0149 |
| 144 | 144 | 0.965 |
| 145 | 145 | 0.841 |
| 146 | 146 | 0.415 |
| 147 | 147 | 0.459 |
| 148 | 148 | 0.162 |
| 149 | 149 | 0.784 |
| 15 | 15 | 0.0361 |
| 150 | 150 | 0.991 |
| 151 | 151 | 0.297 |
| 152 | 152 | 0.586 |
| 153 | 153 | 0.631 |
| 154 | 154 | 0.255 |
| 155 | 155 | 0.128 |
| 156 | 156 | 0.411 |
| 157 | 157 | 0.109 |
| 158 | 158 | 0.341 |
| 159 | 159 | 0.317 |
| 16 | 16 | 0.382 |
| 160 | 160 | 0.0396 |
| 161 | 161 | 0.129 |
| 162 | 162 | 0.424 |
| 163 | 163 | 0.611 |
| 164 | 164 | 0.977 |
| 165 | 165 | 0.59 |
| 166 | 166 | 0.147 |
| 167 | 167 | 0.884 |
| 168 | 168 | 0.48 |
| 169 | 169 | 0.0564 |
| 17 | 17 | 0.459 |
| 18 | 18 | 0.291 |
| 19 | 19 | 0.756 |
| 2 | 2 | 0.415 |
| 20 | 20 | 0.992 |
| 21 | 21 | 0.315 |
| 22 | 22 | 0.208 |
| 23 | 23 | 0.183 |
| 24 | 24 | 0.125 |
| 25 | 25 | 0.17 |
| 26 | 26 | 0.927 |
| 27 | 27 | 0.146 |
| 28 | 28 | 0.852 |
| 29 | 29 | 0.461 |
| 3 | 3 | 0.636 |
| 30 | 30 | 0.71 |
| 31 | 31 | 0.382 |
| 32 | 32 | 0.0076 |
| 33 | 33 | 0.302 |
| 34 | 34 | 0.619 |
| 35 | 35 | 0.123 |
| 36 | 36 | 0.189 |
| 37 | 37 | 0.313 |
| 38 | 38 | 0.289 |
| 39 | 39 | 0.95 |
| 4 | 4 | 0.469 |
| 40 | 40 | 0.0641 |
| 41 | 41 | 0.0378 |
| 42 | 42 | 0.526 |
| 43 | 43 | 0.245 |
| 44 | 44 | 0.0376 |
| 45 | 45 | 0.317 |
| 46 | 46 | 0.289 |
| 47 | 47 | 0.253 |
| 48 | 48 | 0.528 |
| 49 | 49 | 0.185 |
| 5 | 5 | 0.398 |
| 50 | 50 | 0.708 |
| 51 | 51 | 0.272 |
| 52 | 52 | 0.406 |
| 53 | 53 | 0.941 |
| 54 | 54 | 0.399 |
| 55 | 55 | 0.585 |
| 56 | 56 | 0.342 |
| 57 | 57 | 0.879 |
| 58 | 58 | 0.0629 |
| 59 | 59 | 0.0188 |
| 6 | 6 | 0.455 |
| 60 | 60 | 0.0907 |
| 61 | 61 | 0.219 |
| 62 | 62 | 0.0349 |
| 63 | 63 | 0.55 |
| 64 | 64 | 0.134 |
| 65 | 65 | 0.17 |
| 66 | 66 | 0.892 |
| 67 | 67 | 0.866 |
| 68 | 68 | 0.581 |
| 69 | 69 | 0.776 |
| 7 | 7 | 0.158 |
| 70 | 70 | 0.00389 |
| 71 | 71 | 0.369 |
| 72 | 72 | 0.204 |
| 73 | 73 | 0.384 |
| 74 | 74 | 0.407 |
| 75 | 75 | 0.133 |
| 76 | 76 | 0.991 |
| 77 | 77 | 0.311 |
| 78 | 78 | 0.124 |
| 79 | 79 | 0.283 |
| 8 | 8 | 0.133 |
| 80 | 80 | 0.281 |
| 81 | 81 | 0.422 |
| 82 | 82 | 0.0876 |
| 83 | 83 | 0.2 |
| 84 | 84 | 0.865 |
| 85 | 85 | 0.063 |
| 86 | 86 | 0.815 |
| 87 | 87 | 0.754 |
| 88 | 88 | 0.62 |
| 89 | 89 | 0.104 |
| 9 | 9 | 0.559 |
| 90 | 90 | 0.258 |
| 91 | 91 | 0.824 |
| 92 | 92 | 0.396 |
| 93 | 93 | 0.459 |
| 94 | 94 | 0.226 |
| 95 | 95 | 0.193 |
| 96 | 96 | 0.588 |
| 97 | 97 | 0.748 |
| 98 | 98 | 0.11 |
| 99 | 99 | 0.825 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12582
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000668 human Fibroblast - skin normal, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000406 (nuclear fraction sample)
0000668 (human Fibroblast - skin normal, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
