FF:1985-43F5: Difference between revisions

Latest revision as of 19:09, 4 June 2020

Name:	bone (os femoris), neonate N02
Species:	Mouse (Mus musculus)
Library ID:	CNhs11227
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	bone (os femoris)
dev stage	2 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005623

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11227		CAGE		DRX008937		DRR009811

Accession ID Mm9

Library id		BAM		CTSS
CNhs11227		DRZ001236		DRZ002619

Accession ID Mm10

Library id		BAM		CTSS
CNhs11227		DRZ012586		DRZ013969

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11227

0	0
1	0
10	0
100	0
1000	0.354
1001	0.348
1002	0.0712
1003	0.283
1004	0
1005	0.144
1006	0.454
1007	0.0472
1008	0
1009	0.237
101	0.00728
1010	0
1011	-0.026
1012	0
1013	-0.0774
1014	0.462
1015	2.684411e-4
1016	0.209
1017	0
1018	0
1019	0
102	0
1020	0
1021	0.0164
1022	0.418
1023	0
1024	0.274
1025	0
1026	0.0651
1027	0.239
1028	0
1029	0.262
103	0.957
1030	0.0651
1031	0.262
1032	0.137
1033	-0.0419
1034	0
1035	0.0977
1036	-0.0113
1037	0
1038	0.111
1039	0.067
104	0
1040	0.232
1041	0.0651

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11227

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.64
MA0003.1	MA0003.1	0.0471
MA0004.1	MA0004.1	0.0879
MA0006.1	MA0006.1	0.0795
MA0007.1	MA0007.1	0.894
MA0009.1	MA0009.1	0.255
MA0014.1	MA0014.1	0.408
MA0017.1	MA0017.1	0.00612
MA0018.2	MA0018.2	1.48201e-4
MA0019.1	MA0019.1	0.112
MA0024.1	MA0024.1	0.856
MA0025.1	MA0025.1	0.0271
MA0027.1	MA0027.1	0.0621
MA0028.1	MA0028.1	3.10538e-6
MA0029.1	MA0029.1	0.284
MA0030.1	MA0030.1	0.433
MA0031.1	MA0031.1	0.139
MA0035.2	MA0035.2	0.568
MA0038.1	MA0038.1	0.996
MA0039.2	MA0039.2	0.477
MA0040.1	MA0040.1	0.169
MA0041.1	MA0041.1	0.102
MA0042.1	MA0042.1	0.76
MA0043.1	MA0043.1	0.0148
MA0046.1	MA0046.1	3.04597e-16
MA0047.2	MA0047.2	0.0168
MA0048.1	MA0048.1	0.343
MA0050.1	MA0050.1	0.0181
MA0051.1	MA0051.1	0.0538
MA0052.1	MA0052.1	7.64668e-36
MA0055.1	MA0055.1	0.0181
MA0057.1	MA0057.1	0.41
MA0058.1	MA0058.1	0.114
MA0059.1	MA0059.1	0.0843
MA0060.1	MA0060.1	0.0109
MA0061.1	MA0061.1	0.338
MA0062.2	MA0062.2	8.54191e-11
MA0065.2	MA0065.2	0.903
MA0066.1	MA0066.1	0.899
MA0067.1	MA0067.1	0.0129
MA0068.1	MA0068.1	0.0402
MA0069.1	MA0069.1	0.107
MA0070.1	MA0070.1	0.812
MA0071.1	MA0071.1	0.224
MA0072.1	MA0072.1	0.132
MA0073.1	MA0073.1	0.824
MA0074.1	MA0074.1	0.811
MA0076.1	MA0076.1	3.56e-7
MA0077.1	MA0077.1	0.295
MA0078.1	MA0078.1	0.175
MA0079.2	MA0079.2	0.0577
MA0080.2	MA0080.2	0.0713
MA0081.1	MA0081.1	0.823
MA0083.1	MA0083.1	4.62437e-8
MA0084.1	MA0084.1	0.818
MA0087.1	MA0087.1	0.644
MA0088.1	MA0088.1	0.383
MA0090.1	MA0090.1	0.0745
MA0091.1	MA0091.1	0.0354
MA0092.1	MA0092.1	0.231
MA0093.1	MA0093.1	0.147
MA0099.2	MA0099.2	0.61
MA0100.1	MA0100.1	0.0744
MA0101.1	MA0101.1	0.557
MA0102.2	MA0102.2	0.654
MA0103.1	MA0103.1	1.58556e-6
MA0104.2	MA0104.2	0.0481
MA0105.1	MA0105.1	0.505
MA0106.1	MA0106.1	0.886
MA0107.1	MA0107.1	0.84
MA0108.2	MA0108.2	1.75486e-5
MA0111.1	MA0111.1	0.958
MA0112.2	MA0112.2	0.00476
MA0113.1	MA0113.1	0.707
MA0114.1	MA0114.1	0.00213
MA0115.1	MA0115.1	0.101
MA0116.1	MA0116.1	0.54
MA0117.1	MA0117.1	0.701
MA0119.1	MA0119.1	0.41
MA0122.1	MA0122.1	0.858
MA0124.1	MA0124.1	0.937
MA0125.1	MA0125.1	0.669
MA0131.1	MA0131.1	0.464
MA0135.1	MA0135.1	0.934
MA0136.1	MA0136.1	0.00125
MA0137.2	MA0137.2	0.00125
MA0138.2	MA0138.2	0.771
MA0139.1	MA0139.1	0.0472
MA0140.1	MA0140.1	0.0138
MA0141.1	MA0141.1	0.872
MA0142.1	MA0142.1	0.215
MA0143.1	MA0143.1	0.851
MA0144.1	MA0144.1	0.112
MA0145.1	MA0145.1	0.107
MA0146.1	MA0146.1	0.415
MA0147.1	MA0147.1	0.134
MA0148.1	MA0148.1	0.0415
MA0149.1	MA0149.1	0.0423
MA0150.1	MA0150.1	0.259
MA0152.1	MA0152.1	0.0678
MA0153.1	MA0153.1	1.51683e-13
MA0154.1	MA0154.1	0.0893
MA0155.1	MA0155.1	0.0795
MA0156.1	MA0156.1	9.54522e-5
MA0157.1	MA0157.1	0.519
MA0159.1	MA0159.1	0.727
MA0160.1	MA0160.1	0.439
MA0162.1	MA0162.1	0.269
MA0163.1	MA0163.1	0.124
MA0164.1	MA0164.1	0.537
MA0258.1	MA0258.1	0.219
MA0259.1	MA0259.1	0.366

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11227

Novel motif	Logo	P-value
1	1	0.828
10	10	0.717
100	100	0.731
101	101	0.693
102	102	0.781
103	103	0.313
104	104	0.778
105	105	0.103
106	106	0.14
107	107	0.0862
108	108	0.699
109	109	0.234
11	11	0.876
110	110	0.621
111	111	0.778
112	112	0.444
113	113	0.976
114	114	0.826
115	115	1
116	116	0.473
117	117	0.614
118	118	0.888
119	119	0.685
12	12	0.123
120	120	0.259
121	121	0.683
122	122	0.864
123	123	0.953
124	124	0.0785
125	125	0.38
126	126	0.782
127	127	0.174
128	128	0.492
129	129	0.717
13	13	0.0845
130	130	0.857
131	131	0.771
132	132	0.798
133	133	0.647
134	134	0.857
135	135	0.678
136	136	0.36
137	137	0.325
138	138	0.167
139	139	0.946
14	14	0.695
140	140	0.239
141	141	0.944
142	142	0.487
143	143	0.996
144	144	0.00131
145	145	0.614
146	146	0.543
147	147	0.772
148	148	0.819
149	149	0.869
15	15	0.213
150	150	0.208
151	151	0.756
152	152	0.027
153	153	0.236
154	154	0.624
155	155	0.946
156	156	6.70933e-17
157	157	0.704
158	158	0.858
159	159	0.104
160	160	0.0584
161	161	0.208
162	162	0.582
163	163	0.465
164	164	0.605
165	165	0.822
166	166	0.276
167	167	0.314
168	168	0.132
169	169	0.00227
17	17	0.586
18	18	0.445
19	19	0.0302
2	2	0.227
20	20	0.785
21	21	0.999
22	22	0.177
23	23	0.656
24	24	0.514
25	25	0.597
26	26	0.0419
27	27	0.648
28	28	0.302
29	29	0.331
3	3	0.96
30	30	0.634
31	31	0.913
32	32	0.00912
33	33	0.32
34	34	0.0689
35	35	0.0427
36	36	0.0727
37	37	0.211
38	38	0.419
39	39	0.245
4	4	0.977
40	40	0.0725
41	41	0.292
42	42	0.691
43	43	0.567
44	44	0.167
45	45	0.237
46	46	0.381
47	47	0.669
48	48	0.533
49	49	0.677
5	5	0.075
50	50	0.0477
51	51	0.989
52	52	0.174
53	53	0.671
54	54	0.523
55	55	0.997
56	56	0.71
57	57	0.89
58	58	0.805
59	59	0.0132
6	6	0.318
60	60	0.158
61	61	0.97
62	62	0.912
63	63	0.21
64	64	0.566
65	65	0.377
66	66	0.701
67	67	0.224
68	68	0.449
69	69	0.39
7	7	0.277
70	70	0.515
71	71	0.19
72	72	0.307
73	73	0.139
74	74	0.988
75	75	0.378
76	76	0.615
77	77	0.356
78	78	0.0379
79	79	0.444
8	8	0.903
80	80	0.642
81	81	0.563
82	82	0.961
83	83	0.772
84	84	0.809
85	85	0.103
86	86	0.971
87	87	0.0168
88	88	0.711
89	89	0.264
9	9	0.182
90	90	0.0403
91	91	0.0209
92	92	0.392
93	93	0.108
94	94	0.569
95	95	0.305
96	96	0.488
97	97	0.443
98	98	0.563
99	99	0.59

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11227

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011463 mouse bone- os femoris - neonate N2 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000981 (femur)
0001474 (bone element)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0000026 (appendage)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0002472 (stylopod)
0008784 (lower limb segment)
0001062 (anatomical entity)
0000480 (anatomical group)
0006058 (multi-limb segment region)
0003608 (hindlimb long bone)
0003826 (upper leg bone)
0008202 (bone of hip region)
0000075 (subdivision of skeletal system)
0004381 (skeleton of limb)
0007273 (pelvic appendage skeleton)
0004765 (skeletal element)
0010912 (subdivision of skeleton)
0004708 (paired limb/fin)
0002101 (limb)
0004709 (pelvic appendage)
0002513 (endochondral bone)
0004375 (bone of free limb or fin)
0010740 (bone of appendage girdle complex)
0002529 (limb segment)
0010363 (endochondral element)
0010538 (paired limb/fin segment)
0002428 (limb bone)
0010742 (bone of pelvic complex)
0002495 (long bone)
0003464 (hindlimb bone)
0003606 (limb long bone)
0005893 (leg bone)
0010317 (germ layer / neural crest derived structure)
0010712 (limb skeleton subdivision)
0010758 (subdivision of organism along appendicular axis)
0010707 (appendage girdle complex)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000978 (leg)
0002103 (hindlimb)
0000376 (hindlimb stylopod)
0001441 (hindlimb skeleton)
0011249 (appendicular skeletal system)
0000154 (posterior region of body)
0010709 (pelvic complex)
0002091 (appendicular skeleton)
0004288 (skeleton)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000307 (mouse neonate N2 sample)
0011463 (mouse bone- os femoris - neonate N2 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0005866 (pre-cartilage condensation)
UBERON:0006234 (femur pre-cartilage condensation)
UBERON:0010316 (germ layer / neural crest)
UBERON:0010882 (limb bone pre-cartilage condensation)
UBERON:0010886 (hindlimb bone pre-cartilage condensation)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0005418,UBERON:0000922,UBERON:0000981,UBERON:0001474,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0000026,UBERON:0000475,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0002472,UBERON:0008784,UBERON:0001062,UBERON:0005291,UBERON:0003102,UBERON:0006058,UBERON:0002495,UBERON:0003608,UBERON:0003826,UBERON:0008202,UBERON:0000075,UBERON:0007823,UBERON:0002529,UBERON:0003104,UBERON:0004708,UBERON:0002101,UBERON:0004709,UBERON:0000914,UBERON:0004375,UBERON:0001048,UBERON:0002428,UBERON:0003464,UBERON:0003606,UBERON:0009749,UBERON:0006598,UBERON:0004357,UBERON:0009872,UBERON:0003860,UBERON:0004347,UBERON:0005420,UBERON:0005732,UBERON:0005856,UBERON:0006057,UBERON:0005866,UBERON:0007828,UBERON:0002532,UBERON:0005254,UBERON:0002204,UBERON:0001434,UBERON:0000978,UBERON:0002103,UBERON:0000376,UBERON:0001271,UBERON:0000154,UBERON:0002091,UBERON:0009142,UBERON:0003081,UBERON:0001464,UBERON:0003285,UBERON:0006603,UBERON:0010129,UBERON:0005733,UBERON:0005730,UBERON:0006234
+|DRA_sample_Accession=CAGE@SAMD00005623
+|accession_numbers=CAGE;DRX008937;DRR009811;DRZ001236;DRZ002619;DRZ012586;DRZ013969
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000981,UBERON:0001474,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0000026,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0002472,UBERON:0008784,UBERON:0001062,UBERON:0000480,UBERON:0006058,UBERON:0003608,UBERON:0003826,UBERON:0008202,UBERON:0000075,UBERON:0004381,UBERON:0007273,UBERON:0004765,UBERON:0010912,UBERON:0004708,UBERON:0002101,UBERON:0004709,UBERON:0002513,UBERON:0004375,UBERON:0010740,UBERON:0002529,UBERON:0010363,UBERON:0010538,UBERON:0002428,UBERON:0010742,UBERON:0002495,UBERON:0003464,UBERON:0003606,UBERON:0005893,UBERON:0010317,UBERON:0010712,UBERON:0010758,UBERON:0010707,UBERON:0002204,UBERON:0001434,UBERON:0000978,UBERON:0002103,UBERON:0000376,UBERON:0001441,UBERON:0011249,UBERON:0000154,UBERON:0010709,UBERON:0002091,UBERON:0004288
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000307,FF:0011463
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr13:83643159..83643226,+!p3@Mef2c!1.98!93.99!Mef2c;;chr4:87452200..87452229,-!p2@Mllt3!1.49!62.93!Mllt3;;chr2:120365588..120365602,-!p2@Zfp106!1.49!49.82!Zfp106;;chr10:106931775..106931798,-!p1@Myf6!1.49!29.93!Myf6;;chr7:6649134..6649167,-!p1@Zim1!1.47!150.12!Zim1;;chr1:136186574..136186592,+!p1@Myog!1.45!27.50!Myog;;chr7:119885539..119885574,+!p3@Tead1!1.45!27.18!Tead1;;chr3:99057269..99057306,+!p1@Tbx15!1.42!30.41!Tbx15;;chr3:99057677..99057730,+!p2@Tbx15!1.40!24.27!Tbx15;;chr17:44951553..44951586,-!p2@Runx2!1.39!26.04!Runx2;;chr8:87425854..87425891,+!p1@Klf1!1.39!23.29!Klf1;;chr4:87452180..87452196,-!p3@Mllt3!1.36!42.38!Mllt3;;chr15:102197405..102197454,-!p1@Sp7!1.36!22.00!Sp7;;chr6:52190467..52190500,-!p1@Hoxa10!1.34!21.03!Hoxa10;;chr12:74147689..74147711,-!p1@Six1!1.33!44.49!Six1;;chr12:37835141..37835194,+!p1@Meox2!1.27!53.22!Meox2;;chr2:28477452..28477483,-!p1@Gfi1b!1.24!20.06!Gfi1b;;chr7:53631837..53631850,+!p1@Myod1!1.24!16.50!Myod1;;chr17:44951431..44951445,-!p3@Runx2!1.22!15.69!Runx2;;chr12:37835120..37835133,+!p2@Meox2!1.17!19.90!Meox2;;chr11:94981424..94981439,+!p1@Dlx3!1.17!15.53!Dlx3;;chr10:12810631..12810649,+!p1@Plagl1!1.16!347.64!Plagl1;;chr6:52176164..52176195,-!p1@Hoxa9!1.14!16.01!Hoxa9;;chr15:102196745..102196769,-!p2@Sp7!1.14!12.78!Sp7;;chr18:80909801..80909819,-!p1@Nfatc1!1.12!71.50!Nfatc1;;chr6:6832076..6832092,-!p1@Dlx5!1.12!14.24!Dlx5;;chr7:122989594..122989626,-!p1@Sox6!1.10!11.65!Sox6;;chr10:106931839..106931851,-!p3@Myf6!1.09!11.32!Myf6;;chr15:103085660..103085681,-!p1@Nfe2!1.06!15.69!Nfe2;;chr13:83643232..83643254,+!p5@Mef2c!1.06!10.51!Mef2c;;chr11:101755669..101755686,-!p1@Meox1!1.04!18.28!Meox1;;chr10:106931803..106931817,-!p2@Myf6!1.04!10.03!Myf6;;chr12:34642510..34642530,+!p1@Twist1!1.03!31.38!Twist1;;chr15:102828658..102828678,+!p1@Hoxc6!1.03!9.71!Hoxc6;;chr1:169548377..169548430,+!p1@Rxrg!1.02!9.38!Rxrg;;chr4:139388835..139388867,-!p1@Pax7!0.99!8.74!Pax7;;chr1:165243792..165243808,-!p1@Prrx1!0.98!30.74!Prrx1;;chr12:37835203..37835218,+!p3@Meox2!0.98!10.19!Meox2;;chr15:76287876..76287894,+!p1@Scx!0.97!46.75!Scx;;chr13:55932591..55932622,-!p1@Pitx1!0.95!9.54!Pitx1;;chr7:122989632..122989668,-!p2@Sox6!0.95!7.93!Sox6;;chrX:7544943..7545001,-!p1@Gata1!0.95!7.93!Gata1;;chr12:37835248..37835260,+!p4@Meox2!0.94!7.76!Meox2;;chr10:106923133..106923146,-!p1@Myf5!0.94!7.76!Myf5;;chr17:14011485..14011507,+!p2@Mllt4!0.94!7.76!Mllt4;;chr4:114732112..114732158,+!p1@Tal1!0.93!16.99!Tal1;;chr13:83643136..83643158,+!p7@Mef2c!0.93!7.60!Mef2c;;chr1:165243591..165243625,-!p2@Prrx1!0.92!11.32!Prrx1;;chr1:57029281..57029326,-!p1@Satb2!0.91!11.32!Satb2;;chr1:165243379..165243402,-!p3@Prrx1!0.91!10.84!Prrx1;;chr1:57028125..57028149,-!p2@Satb2!0.91!7.12!Satb2;;chr11:11584970..11585030,+!p2@Ikzf1!0.90!10.19!Ikzf1;;chr15:97738692..97738747,-!p1@Vdr!0.89!39.31!Vdr;;chr15:103164702..103164778,-!p3@Zfp385a!0.88!7.93!Zfp385a;;chr15:75578748..75578752,-!p1@Mafa!0.88!6.63!Mafa;;chr2:91864300..91864379,-!p2@Creb3l1!0.86!18.93!Creb3l1;;chr6:6831950..6831985,-!p2@Dlx5!0.86!6.96!Dlx5;;chr16:25684232..25684285,+!p2@Trp63!0.86!6.31!Trp63;;chr15:102797170..102797182,+!p3@Hoxc10!0.85!6.15!Hoxc10;;chr16:43363190..43363242,+!p2@Zbtb20!0.84!19.09!Zbtb20;;chr2:168427252..168427273,-!p2@Nfatc2!0.84!7.44!Nfatc2;;chr5:24107779..24107825,-!p1@Smarcd3!0.83!41.74!Smarcd3;;chr9:96159147..96159204,+!p2@Tfdp2!0.83!11.32!Tfdp2;;chr1:57028538..57028553,-!p6@Satb2!0.83!5.82!Satb2;;chr3:66785857..66785873,-!p1@Shox2!0.82!5.66!Shox2;;chr7:53631818..53631829,+!p2@Myod1!0.82!5.66!Myod1;;chr2:74542918..74542971,+!p1@Hoxd8!0.81!8.57!Hoxd8;;chr14:67853632..67853674,+!p3@Ebf2!0.81!6.79!Ebf2;;chr9:51021788..51021802,+!p1@Pou2af1!0.81!6.63!Pou2af1;;chr11:85699862..85699920,+!p1@Tbx4!0.80!5.34!Tbx4;;chr17:25707623..25707639,-!p1@Sox8!0.79!24.10!Sox8;;chr8:90328310..90328362,-!p3@Zfp423!0.79!6.15!Zfp423;;chr6:6831928..6831949,-!p3@Dlx5!0.79!5.18!Dlx5;;chr8:87297280..87297326,-!p2@Nfix!0.78!12.62!Nfix;;chr15:102797288..102797302,+!p1@Hoxc10!0.78!5.01!Hoxc10;;chr6:52184901..52184959,-!p2@Hoxa10!0.77!4.85!Hoxa10;;chr3:66785201..66785226,-!p3@Shox2!0.77!4.85!Shox2;;chr2:91864449..91864492,-!p3@Creb3l1!0.76!8.09!Creb3l1;;chr1:14746065..14746079,-!p1@Msc!0.76!5.82!Msc;;chr12:37835219..37835230,+!p5@Meox2!0.76!4.69!Meox2;;chr15:103082088..103082136,-!p2@Nfe2!0.76!4.69!Nfe2;;chr6:30908793..30908815,-!p1@Klf14!0.76!4.69!Klf14;;chr15:102087737..102087801,-!p3@Rarg!0.75!8.09!Rarg;;chr15:75578637..75578669,-!p2@Mafa!0.75!5.34!Mafa;;chr5:24107903..24107917,-!p6@Smarcd3!0.73!5.66!Smarcd3;;chr3:99057256..99057268,+!p3@Tbx15!0.73!4.37!Tbx15;;chr3:99044284..99044308,+!p4@Tbx15!0.73!4.37!Tbx15;;chr15:102797225..102797243,+!p2@Hoxc10!0.73!4.37!Hoxc10;;chr7:119885584..119885594,+!p8@Tead1!0.72!4.21!Tead1;;chr18:7004715..7004731,-!p1@Mkx!0.71!10.84!Mkx;;chr15:35225845..35225867,+!p1@Osr2!0.70!11.16!Osr2;;chr5:24107993..24108036,-!p2@Smarcd3!0.70!10.35!Smarcd3;;chr15:102797183..102797205,+!p4@Hoxc10!0.70!4.04!Hoxc10;;chr1:169528720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ki!0.37!80.40!Ski;;chr18:83080231..83080254,+!p3@Zfp516!0.37!6.31!Zfp516;;chr4:63064364..63064384,-!p1@Akna!0.37!5.50!Akna;;chr9:32349240..32349276,-!p2@Fli1!0.37!4.37!Fli1;;chr11:96145450..96145517,+!p2@Hoxb7!0.37!2.43!Hoxb7;;chr4:82151178..82151262,-!p1@Nfib!0.36!83.63!Nfib;;chr11:112643496..112643562,+!p1@Sox9!0.36!76.68!Sox9;;chr10:92773591..92773623,-!p1@Elk3!0.36!45.78!Elk3;;chr16:4594740..4594759,+!p1@Glis2!0.36!23.13!Glis2;;chr2:44965593..44965624,-!p3@Zeb2!0.36!11.00!Zeb2;;chr17:46693078..46693097,-!p3@Srf!0.36!7.76!Srf;;chr6:14851287..14851342,+!p1@Foxp2!0.36!6.15!Foxp2;;chr18:83080305..83080335,+!p2@Zfp516!0.36!5.82!Zfp516;;chr7:19679964..19679982,+!p1@Six5!0.36!5.18!Six5;;chr4:82151148..82151159,-!p5@Nfib!0.36!5.18!Nfib;;chr2:160698668..160698679,-!p4@Zhx3!0.36!3.07!Zhx3;;chr11:52096750..52096772,-!p4@Tcf7!0.36!2.43!Tcf7;;chr13:99124189..99124205,+!p1@Foxd1!0.36!2.43!Foxd1;;chr11:120491440..120491474,-!p3@Mafg!0.36!2.26!Mafg;;chr4:82151500..82151505,-!p11@Nfib!0.36!1.78!Nfib;;chr6:16848395..16848416,-!p2@Tfec!0.36!1.62!Tfec;;chr6:52161666..52161711,-!p1@Hoxa6!0.36!1.29!Hoxa6;;chr6:6831986..6832007,-!p4@Dlx5!0.36!1.29!Dlx5;;chr6:144157968..144157989,-!p7@Sox5!0.36!1.29!Sox5;;chr15:102196702..102196713,-!p6@Sp7!0.36!1.29!Sp7;;chr4:114581497..114581519,-!p2@Foxd2!0.36!1.29!Foxd2;;chr4:44723520..44723544,-!p2@Pax5!0.36!1.29!Pax5;;chr4:134676555..134676575,+!p2@Runx3!0.36!1.29!Runx3;;chr11:44431115..44431132,+!p9@Ebf1!0.36!1.29!Ebf1;;chr11:5420655..5420659,+!p3@Xbp1!0.36!1.29!Xbp1;;chr9:63514630..63514652,-!p8@Smad3!0.36!1.29!Smad3;;chr8:74842952..74842970,+!p1@Klf2!0.35!137.83!Klf2;;chr9:121669118..121669179,+!p1@Zfp651!0.35!21.03!Zfp651;;chr17:46693107..46693137,-!p1@Srf!0.35!19.41!Srf;;chr4:3865501..3865548,-!p1@Plag1!0.35!9.71!Plag1;;chr10:13685585..13685645,+!p2@Hivep2!0.35!6.31!Hivep2;;chr10:57206224..57206260,+!p2@Hsf2!0.35!4.04!Hsf2;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!0.35!2.75!Zfhx3;;chr18:83079981..83080037,+!p6@Zfp516!0.35!2.75!Zfp516;;chr11:102178005..102178022,-!p8@Ubtf!0.35!2.59!Ubtf;;chr10:5734525..5734569,-!p3@Esr1!0.35!2.59!Esr1;;chr13:112476264..112476282,+!p3@Mier3!0.35!2.10!Mier3;;chr8:87237711..87237727,-!p11@Nfix!0.35!1.94!Nfix;;chr16:43364215..43364252,+!p14@Zbtb20!0.35!1.78!Zbtb20;;chr1:140739014..140739032,-!p1@Lhx9!0.35!1.78!Lhx9;;chr1:179374784..179374800,+!p2@Zfp238!0.35!1.62!Zfp238;;chr11:44431191..44431205,+!p11@Ebf1!0.35!1.46!Ebf1;;chr18:5591866..5591900,+!p1@Zeb1!0.34!47.56!Zeb1;;chr15:81633165..81633188,+!p2@Tef!0.34!15.69!Tef;;chr14:19071466..19071550,-!p1@Nr1d2!0.34!12.94!Nr1d2;;chr3:95032558..95032641,-!p2@Mllt11!0.34!10.51!Mllt11;;chr6:131338483..131338494,-!p5@Csda!0.34!9.71!Csda;;chr2:44965856..44965896,-!p5@Zeb2!0.34!7.12!Zeb2;;chr16:43619101..43619151,+!p6@Zbtb20!0.34!4.04!Zbtb20;;chr10:44178521..44178557,-!p1@Prdm1!0.34!2.75!Prdm1;;chr2:30700788..30700824,+!p2@Prrx2!0.34!2.26!Prrx2;;chr4:114730254..114730276,+!p2@Tal1!0.34!1.78!Tal1;;chr2:77654936..77654988,-!p4@Zfp385b!0.34!1.62!Zfp385b;;chr2:181406327..181406350,-!p1@Sox18!0.33!59.85!Sox18;;chr13:55431084..55431137,-!p1@Mxd3!0.33!14.56!Mxd3;;chr2:162880387..162880413,+!p1@Mybl2!0.33!11.65!Mybl2;;chr11:16908650..16908690,-!p1@Plek!0.33!11.32!Plek;;chr18:69505414..69505465,+!p6@Tcf4!0.33!6.47!Tcf4;;chr6:131338278..131338362,-!p2@Csda!0.33!5.01!Csda;;chr18:83080255..83080277,+!p4@Zfp516!0.33!4.04!Zfp516;;chr17:47874123..47874156,+!p2@Tfeb!0.33!3.56!Tfeb;;chr16:42907656..42907675,+!p10@Zbtb20!0.33!3.40!Zbtb20;;chr16:43619057..43619078,+!p8@Zbtb20!0.33!3.24!Zbtb20;;chr15:50721640..50721654,-!p7@Trps1!0.33!2.26!Trps1;;chr11:85646469..85646488,+!p5@Tbx2!0.33!2.10!Tbx2;;chr17:44873258..44873281,-!p5@Runx2!0.33!1.78!Runx2;;chr11:98636508..98636524,-!p3@Nr1d1!0.33!1.62!Nr1d1;;chr15:102839948..102839975,+!p3@Hoxc6!0.33!1.13!Hoxc6;;chr15:50714356..50714368,-!p14@Trps1!0.33!1.13!Trps1;;chr3:128902878..128902893,+!p6@Pitx2!0.33!1.13!Pitx2;;chr2:77541432..77541474,-!p5@Zfp385b!0.33!1.13!Zfp385b;;chr4:84321317..84321332,-!p4@Bnc2!0.33!1.13!Bnc2;;chr8:90328289..90328301,-!p4@Zfp423!0.33!1.13!Zfp423;;chr8:94881639..94881650,+!p5@Irx5!0.33!1.13!Irx5;;chr9:63514609..63514620,-!p10@Smad3!0.33!1.13!Smad3;;chr16:18587052..18587063,-!p3@Tbx1!0.33!1.13!Tbx1;;chr6:6813269..6813272,+!p2@Dlx6!0.33!1.13!Dlx6;;chr6:52190858..52190873,-!p4@Hoxa10!0.33!1.13!Hoxa10;;chr18:35020854..35020869,+!p1@Egr1!0.32!72.96!Egr1;;chr8:118231723..118231740,-!p1@Maf!0.32!42.38!Maf;;chr16:42907676..42907797,+!p1@Zbtb20!0.32!23.78!Zbtb20;;chr19:55816414..55816425,+!p4@Tcf7l2!0.32!9.22!Tcf7l2;;chrX:53599567..53599592,+!p1@Zfp449!0.32!7.28!Zfp449;;chr12:3806536..3806571,+!p3@Dnmt3a!0.32!6.15!Dnmt3a;;chr2:77357622..77357704,-!p1@Zfp385b!0.32!4.37!Zfp385b;;chr18:83080278..83080293,+!p5@Zfp516!0.32!3.56!Zfp516;;chr2:56976543..56976558,-!p2@Nr4a2!0.32!3.56!Nr4a2;;chr18:75979866..75979890,+!p3@Zbtb7c!0.32!3.24!Zbtb7c;;chr4:97444563..97444572,+!p12@Nfia!0.32!3.07!Nfia;;chr1:120949925..120949947,-!p4@Gli2!0.32!2.91!Gli2;;chr18:76219118..76219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@Maf!0.17!1.13!Maf;;chr18:69753145..69753159,+!p14@Tcf4!0.17!0.97!Tcf4;;chr19:55817629..55817652,+!p14@Tcf7l2!0.17!0.97!Tcf7l2;;chrX:110411840..110411860,+!p1@Dach2!0.17!0.81!Dach2;;chr8:123640090..123640101,+!p2@Foxc2!0.17!0.65!Foxc2;;chr18:69752598..69752607,+!p26@Tcf4!0.17!0.65!Tcf4;;chr2:74550178..74550214,+!p5@Hoxd3!0.17!0.65!Hoxd3;;chr2:77357593..77357606,-!p6@Zfp385b!0.17!0.65!Zfp385b;;chr6:115310968..115310980,+!p8@Pparg!0.17!0.65!Pparg;;chr6:83301229..83301242,+!p3@Bola3!0.17!0.49!Bola3;;chr6:52184880..52184893,-!p6@Hoxa10!0.17!0.49!Hoxa10;;chr5:120285161..120285176,+!p2@Tbx5!0.17!0.49!Tbx5;;chr5:120285104..120285113,+!p5@Tbx5!0.17!0.49!Tbx5;;chr5:125523164..125523188,-!p8@Ncor2!0.17!0.49!Ncor2;;chr6:52167434..52167450,-!p3@Hoxa7!0.17!0.49!Hoxa7;;chr7:123182318..123182332,-!p11@Sox6!0.17!0.49!Sox6;;chr6:52183482..52183486,-!p10@Hoxa10!0.17!0.49!Hoxa10;;chr2:74536050..74536065,+!p2@Hoxd9!0.17!0.49!Hoxd9;;chr4:107107224..107107259,+!p2@Glis1!0.17!0.49!Glis1;;chr4:53792566..53792578,+!p1@Tal2!0.17!0.49!Tal2;;chr4:13678514..13678539,+!p14@Runx1t1!0.17!0.49!Runx1t1;;chr4:44717334..44717367,-!p5@Pax5!0.17!0.49!Pax5;;chr2:77541362..77541382,-!p8@Zfp385b!0.17!0.49!Zfp385b;;chr4:97248607..97248649,+!p15@Nfia!0.17!0.49!Nfia;;chr3:130813254..130813263,+!p4@Lef1!0.17!0.49!Lef1;;chr9:87626109..87626120,-!p3@Tbx18!0.17!0.49!Tbx18;;chr9:32349051..32349061,-!p5@Fli1!0.17!0.49!Fli1;;chr7:30088957..30088966,+!p6@Dpf1!0.17!0.49!Dpf1;;chr9:31720903..31720918,-!p2@Barx2!0.17!0.49!Barx2;;chr10:5734660..5734670,-!p7@Esr1!0.17!0.49!Esr1;;chr11:96880072..96880079,+!p1@Sp6!0.17!0.49!Sp6;;chr11:101645774..101645795,-!p9@Etv4!0.17!0.49!Etv4;;chr11:98407234..98407259,-!p2@Ikzf3!0.17!0.49!Ikzf3;;chr11:98822047..98822072,+!p9@Rara!0.17!0.49!Rara;;chr16:43364103..43364130,+!p30@Zbtb20!0.17!0.49!Zbtb20;;chr16:43235969..43235989,+!p20@Zbtb20!0.17!0.49!Zbtb20;;chr18:14130594..14130600,-!p7@Zfp521!0.17!0.49!Zfp521;;chr17:44951365..44951368,-!p21@Runx2!0.17!0.49!Runx2;;chr15:103083928..103083932,-!p10@Nfe2!0.17!0.49!Nfe2;;chr12:57796615..57796687,+!p1@Pax9!0.17!0.49!Pax9;;chr14:67853568..67853573,+!p5@Ebf2!0.17!0.49!Ebf2;;chr14:65994176..65994223,+!p9@Zfp395!0.17!0.49!Zfp395;;chr15:102839912..102839938,+!p5@Hoxc6!0.17!0.49!Hoxc6;;chr15:103085864..103085876,-!p5@Nfe2!0.17!0.49!Nfe2;;chr14:17408052..17408073,-!p5@Rarb!0.17!0.49!Rarb;;chr14:56443742..56443756,+!p6@Nfatc4!0.17!0.49!Nfatc4;;chr13:78338032..78338049,-!p8@Nr2f1!0.17!0.49!Nr2f1;;chr14:17407857..17407875,-!p4@Rarb!0.17!0.49!Rarb;;chr1:169528581..169528607,+!p7@Rxrg!0.17!0.49!Rxrg;;chr1:92950128..92950139,+!p4@Lrrfip1!0.17!0.49!Lrrfip1;;chr1:169528520..169528542,+!p2@Rxrg!0.17!0.49!Rxrg;;chr19:55969946..55969973,+!p8@Tcf7l2!0.17!0.49!Tcf7l2;;chr19:55972767..55972779,+!p20@Tcf7l2!0.17!0.49!Tcf7l2;;chr1:169528457..169528482,+!p3@Rxrg!0.17!0.49!Rxrg;;chr1:52065530..52065548,+!p3@Stat4!0.17!0.49!Stat4;;chr19:59533163..59533185,+!p3@Emx2!0.17!0.49!Emx2;;chr19:59533429..59533470,+!p4@Emx2!0.17!0.49!Emx2;;chr1:57028111..57028122,-!p9@Satb2!0.17!0.49!Satb2;;chr1:57029027..57029056,-!p7@Satb2!0.17!0.49!Satb2;;chr11:53164236..53164284,+!p1@Aff4!0.16!37.85!Aff4;;chr15:81641878..81641921,+!p1@Tef!0.16!33.32!Tef;;chr6:140571997..140572136,+!p1@Aebp2!0.16!29.93!Aebp2;;chr11:6375995..6376105,-!p1@Purb!0.16!22.49!Purb;;chr18:84758883..84758919,-!p1@Zfp407!0.16!13.75!Zfp407;;chr8:81552152..81552208,+!p1@Zfp827!0.16!8.74!Zfp827;;chr5:147760305..147760324,+!p2@Gtf3a!0.16!5.50!Gtf3a;;chr6:29476690..29476724,+!p1@Irf5!0.16!5.34!Irf5;;chr7:148513409..148513455,-!p2@Deaf1!0.16!5.34!Deaf1;;chr5:104121453..104121479,+!p4@Aff1!0.16!5.18!Aff1;;chr9:69137672..69137702,+!p2@Rora!0.16!4.85!Rora;;chr10:79896347..79896358,-!p2@Tcf3!0.16!3.88!Tcf3;;chr4:149862477..149862553,+!p3@Rere!0.16!3.88!Rere;;chr15:38230415..38230426,-!p2@Klf10!0.16!3.72!Klf10;;chr7:30875490..30875555,-!p1@Zfp566,p1@Zfp82!0.16!2.91!Zfp566;;chr2:27532734..27532749,+!p2@Rxra!0.16!2.91!Rxra;;chr1:162836606..162836631,+!p2@Rc3h1!0.16!2.75!Rc3h1;;chr8:83262929..83262957,-!p1@Smarca5!0.16!2.75!Smarca5;;chr8:13338745..13338756,+!p2@Tfdp1!0.16!2.10!Tfdp1;;chr2:153475178..153475196,+!p1@Dnmt3b!0.16!1.94!Dnmt3b;;chr5:65213356..65213412,+!p6@Klf3!0.16!1.94!Klf3;;chr10:92773708..92773734,-!p3@Elk3!0.16!1.78!Elk3;;chr2:35960919..35960954,-!p1@Lhx6!0.16!1.62!Lhx6;;chr5:53981592..53981616,+!p3@Rbpj!0.16!1.62!Rbpj;;chr10:67375368..67375433,-!p1@Zfp365!0.16!1.46!Zfp365;;chr13:59924173..59924194,-!p4@Zcchc6!0.16!1.46!Zcchc6;;chr7:56136974..56136989,-!p4@E2f8!0.16!1.29!E2f8;;chr14:65977415..65977426,+!p6@Zfp395!0.16!1.13!Zfp395;;chr13:64254502..64254515,-!p3@Zfp367!0.16!1.13!Zfp367;;chr12:9581317..9581333,+!p3@Osr1!0.16!1.13!Osr1;;chr19:28754655..28754673,-!p3@Glis3!0.16!1.13!Glis3;;chr4:151363123..151363134,-!p2@Thap3!0.16!1.13!Thap3;;chr14:104867201..104867258,-!p1@Pou4f1!0.16!0.97!Pou4f1;;chr12:78063032..78063043,-!p4@Max!0.16!0.97!Max;;chr12:9581243..9581254,+!p4@Osr1!0.16!0.97!Osr1;;chr15:102865048..102865073,+!p3@Hoxc4!0.16!0.81!Hoxc4;;chr8:79423672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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0005866,UBERON:0006234,UBERON:0010316,UBERON:0010882,UBERON:0010886,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:1985-43F5
-|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011463
+|is_a=EFO:0002091;;FF:0011463
+|is_obsolete=
+|library_id=CNhs11227
+|library_id_phase_based=2:CNhs11227
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1985
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1985
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/bone%2520%2528os%2520femoris%2529%252c%2520neonate%2520N02.CNhs11227.1985-43F5.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/bone%2520%2528os%2520femoris%2529%252c%2520neonate%2520N02.CNhs11227.1985-43F5.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/bone%2520%2528os%2520femoris%2529%252c%2520neonate%2520N02.CNhs11227.1985-43F5.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/bone%2520%2528os%2520femoris%2529%252c%2520neonate%2520N02.CNhs11227.1985-43F5.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/bone%2520%2528os%2520femoris%2529%252c%2520neonate%2520N02.CNhs11227.1985-43F5.mm9.nobarcode.rdna.fa.gz
 |name=bone (os femoris), neonate N02
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11227,LSID748,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.0466354767981844,0,0,0,0,0,0.764897783719023,0,0,0,0,1.33186611792832,0,0,0,0,0,0,-0.0701583470721578,0,0,0,0,0,0.0651189800845078,0,0,0,0,0,0,0,0.171365843241288,0,0,0,0,0.0273405259450171,0.0634640333107375,0.0578383869147407,0.375317439527622,1.12020111269661,-0.0531572666743524,0,0,0,0,0,0,0,0,0,0,0,0,-0.000886567478932537,0.0651189800845078,0,0,0,-0.0199696967847987,0,0,0.171814341822305,0.417914646811817,0.0243019854507014,0.0293848699080346,0.203197397450411,-0.0363560389606658,0.105499037816151,0,0.0651189800845078,0.0688013907387006,0.0526394389739921,0.171814341822305,0,0.0356175298733755,-0.024277108203086,-0.235295947997697,-0.0137126147553996,0,0,0,0,0,0,-0.0814866010703366,0.0120262720701185,-0.0141479561585393,0,0,0.0651189800845078,0,0
 |rna_box=43
 |rna_catalog_number=
@@ Line 57: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=bone (os femoris)
 |top_motifs=MEF2{A,B,C,D}:2.78240229567;FOXL1:2.63101679178;ESR1:2.04445864671;NKX2-3_NKX2-5:2.0352020107;TFAP4:1.93207883782;TAL1_TCF{3,4,12}:1.91678328147;ZNF238:1.7532706917;GCM1,2:1.72623498929;TOPORS:1.54364766062;IKZF2:1.44534255941;NFATC1..3:1.38924611137;HES1:1.37647598257;SOX5:1.36551272245;RXR{A,B,G}:1.34227472304;TEAD1:1.32261441343;MYBL2:1.3151328993;TLX2:1.31371214328;GLI1..3:1.29970120844;SRF:1.24735150906;TGIF1:1.24185256484;GATA4:1.22269895702;ALX1:1.21015914848;FOXP3:1.20025071525;TFCP2:1.18928797906;HOX{A4,D4}:1.18039910234;EVI1:1.15012352961;IKZF1:1.1032490843;SMAD1..7,9:1.08258100624;TFAP2{A,C}:1.08086345308;NFE2L2:1.04748458009;PAX1,9:1.04684087378;HIF1A:0.98973358323;GFI1:0.969007791671;EP300:0.965209284578;TLX1..3_NFIC{dimer}:0.93913041053;HMGA1,2:0.924595318156;PRDM1:0.914549750377;KLF4:0.889250138154;ZNF423:0.878438281506;MAZ:0.831574553685;IRF7:0.823215013728;HSF1,2:0.817046383436;NR1H4:0.813669644959;UFEwm:0.802831565068;MYOD1:0.768791239886;MTF1:0.745234927246;MAFB:0.739266121849;NR3C1:0.729886326859;NR6A1:0.725004783296;ZNF148:0.700068507341;ATF6:0.673461973655;RREB1:0.66447303197;TFAP2B:0.658952833872;PAX2:0.633273729327;NHLH1,2:0.619606316749;RXRA_VDR{dimer}:0.615280251361;TBP:0.60254310507;NKX2-1,4:0.574222131181;GFI1B:0.569829534152;PATZ1:0.569031089261;HIC1:0.549866888591;CRX:0.549324760471;SPIB:0.508759091161;EBF1:0.492610128212;GATA6:0.488674569996;ZNF384:0.479141835681;SPZ1:0.470021862049;MYFfamily:0.469747259906;SOX{8,9,10}:0.461551339677;MZF1:0.451296666349;STAT2,4,6:0.444800535326;MTE{core}:0.439309535625;E2F1..5:0.436122307504;DMAP1_NCOR{1,2}_SMARC:0.41190495085;ALX4:0.40616728891;NANOG{mouse}:0.379710936797;HOX{A5,B5}:0.365980713896;PITX1..3:0.350041890211;PAX5:0.316741037285;GTF2I:0.310490999047;ZIC1..3:0.30327129565;SPI1:0.302493803878;RUNX1..3:0.299654052962;SP1:0.279749434841;STAT5{A,B}:0.264535769375;XCPE1{core}:0.264375338398;FOXO1,3,4:0.258794162277;FOSL2:0.245179905451;NR5A1,2:0.243662014372;NFE2L1:0.221096195387;FOXP1:0.209358219688;PAX4:0.204648338591;POU5F1:0.19990965103;GTF2A1,2:0.198829220622;CDC5L:0.151016378367;AR:0.107480090369;FOS_FOS{B,L1}_JUN{B,D}:0.0912003061518;TP53:0.0815921290055;EGR1..3:0.058161999908;CUX2:0.048087674505;NFE2:0.0317459350975;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0292684661354;HMX1:0.0232980451596;TEF:0.019604733537;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.00367349083049;ZNF143:-0.0151498230891;NKX2-2,8:-0.0276356601503;SREBF1,2:-0.0349061891302;TFDP1:-0.0362028331952;PPARG:-0.0479862587518;NFKB1_REL_RELA:-0.0490323827895;BPTF:-0.0521150228437;BACH2:-0.0616885504386;YY1:-0.0626434662804;ELF1,2,4:-0.0991126919386;ETS1,2:-0.102548437804;ARID5B:-0.117153559468;LMO2:-0.13199539605;SOX17:-0.142144382364;AIRE:-0.145710798788;FOX{I1,J2}:-0.148864418813;BREu{core}:-0.160021242437;TBX4,5:-0.176712898093;POU1F1:-0.191445689509;ZFP161:-0.192630792116;HBP1_HMGB_SSRP1_UBTF:-0.197865427263;MYB:-0.201476395053;MED-1{core}:-0.216926536332;RFX2..5_RFXANK_RFXAP:-0.226217919514;RORA:-0.241894516728;FOXA2:-0.245153105012;HOXA9_MEIS1:-0.254115057208;CDX1,2,4:-0.259591411646;IRF1,2:-0.277693157981;ESRRA:-0.294875583919;POU3F1..4:-0.298253302866;PDX1:-0.303251669045;HLF:-0.328329630778;POU6F1:-0.391401813815;ATF4:-0.403038599122;ATF2:-0.436494719138;RBPJ:-0.439338285256;REST:-0.464797219498;SOX2:-0.479349032135;CEBPA,B_DDIT3:-0.494889036144;LHX3,4:-0.49734768617;CREB1:-0.502932088004;PAX6:-0.52247064938;JUN:-0.540287194429;NRF1:-0.548201982818;ZBTB16:-0.554882368498;AHR_ARNT_ARNT2:-0.589630275586;FOX{F1,F2,J1}:-0.596302182938;DBP:-0.605645505577;RFX1:-0.621395128698;PRRX1,2:-0.624285756876;HAND1,2:-0.628643777598;HNF4A_NR2F1,2:-0.631614999087;ATF5_CREB3:-0.647689302056;NKX6-1,2:-0.653579117474;EN1,2:-0.656141838038;T:-0.678467885691;NKX3-1:-0.711868700555;VSX1,2:-0.736397094378;HNF1A:-0.762920330223;NKX3-2:-0.778658829332;NFY{A,B,C}:-0.784800276247;PBX1:-0.8069051827;FOXN1:-0.854114023621;OCT4_SOX2{dimer}:-0.866931617574;FOX{D1,D2}:-0.874191316289;POU2F1..3:-0.884077748769;PAX8:-0.897342287722;LEF1_TCF7_TCF7L1,2:-0.9122790854;ZBTB6:-0.912682547671;ELK1,4_GABP{A,B1}:-0.97573926844;GZF1:-1.05799266506;FOXD3:-1.12023780042;NFIX:-1.12280102916;SNAI1..3:-1.13148534673;NFIL3:-1.26971790536;NANOG:-1.28822966788;FOXQ1:-1.30238746717;ADNP_IRX_SIX_ZHX:-1.40983154826;ZEB1:-1.45523372534;STAT1,3:-1.60031333743;bHLH_family:-1.7843022316;FOXM1:-1.85885195512;ONECUT1,2:-1.93549463189
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1985-43F5;search_select_hide=table117:1985-43F5
 }}

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FF:1985-43F5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:09, 4 June 2020

CNhs11227

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0