FFCP PHASE1:Mm9::chr6:142705200..142705220,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12764 | |EntrezGene=12764 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q99KK2 | |UniProt=Q99KK2 | ||
|association_with_transcript=0bp_to_ENSMUST00000032419,NM_009908,uc009eps.2_5end | |association_with_transcript=0bp_to_ENSMUST00000032419,NM_009908,uc009eps.2_5end | ||
|cluster_id=chr6:142705200..142705220,+ | |||
|description=CAGE_peak_3_at_Cmas_5end | |description=CAGE_peak_3_at_Cmas_5end | ||
|id=chr6:142705200..142705220,+ | |id=chr6:142705200..142705220,+ | ||
|ontology_enrichment_celltype=CL:0000117!7.02e-14!23;CL:0000337!7.02e-14!23;CL:0000540!7.44e-08!33;CL:0000047!7.44e-08!33;CL:0000031!7.44e-08!33;CL:0000404!7.44e-08!33 | |ontology_enrichment_celltype=CL:0000117!7.02e-14!23;CL:0000337!7.02e-14!23;CL:0000540!7.44e-08!33;CL:0000047!7.44e-08!33;CL:0000031!7.44e-08!33;CL:0000404!7.44e-08!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.49e-14,23;CL:0000337,6.49e-14,23;CL:0000540,7.15e-08,33;CL:0000047,7.15e-08,33;CL:0000031,7.15e-08,33;CL:0000404,7.15e-08,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.34e-14!52;UBERON:0005068!1.34e-14!52;UBERON:0006241!1.34e-14!52;UBERON:0007135!1.34e-14!52;UBERON:0000955!4.62e-14!50;UBERON:0006238!4.62e-14!50;UBERON:0002616!5.30e-14!49;UBERON:0002020!8.16e-13!34;UBERON:0001017!2.61e-12!73;UBERON:0005743!2.61e-12!73;UBERON:0000073!4.16e-11!75;UBERON:0001016!4.16e-11!75;UBERON:0002791!4.64e-11!29;UBERON:0003528!4.64e-11!29;UBERON:0001893!4.64e-11!29;UBERON:0000033!1.66e-10!63;UBERON:0003080!2.28e-10!40;UBERON:0002780!6.48e-10!39;UBERON:0001890!6.48e-10!39;UBERON:0006240!6.48e-10!39;UBERON:0002346!1.96e-07!71;UBERON:0003075!1.96e-07!71;UBERON:0007284!1.96e-07!71;UBERON:0003056!2.02e-07!49;UBERON:0000064!2.73e-07!99 | |ontology_enrichment_uberon=UBERON:0001049!1.34e-14!52;UBERON:0005068!1.34e-14!52;UBERON:0006241!1.34e-14!52;UBERON:0007135!1.34e-14!52;UBERON:0000955!4.62e-14!50;UBERON:0006238!4.62e-14!50;UBERON:0002616!5.30e-14!49;UBERON:0002020!8.16e-13!34;UBERON:0001017!2.61e-12!73;UBERON:0005743!2.61e-12!73;UBERON:0000073!4.16e-11!75;UBERON:0001016!4.16e-11!75;UBERON:0002791!4.64e-11!29;UBERON:0003528!4.64e-11!29;UBERON:0001893!4.64e-11!29;UBERON:0000033!1.66e-10!63;UBERON:0003080!2.28e-10!40;UBERON:0002780!6.48e-10!39;UBERON:0001890!6.48e-10!39;UBERON:0006240!6.48e-10!39;UBERON:0002346!1.96e-07!71;UBERON:0003075!1.96e-07!71;UBERON:0007284!1.96e-07!71;UBERON:0003056!2.02e-07!49;UBERON:0000064!2.73e-07!99 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.55e-16,54;UBERON:0001049,1.22e-14,52;UBERON:0005068,1.22e-14,52;UBERON:0006241,1.22e-14,52;UBERON:0007135,1.22e-14,52;UBERON:0002020,7.60e-13,34;UBERON:0001017,2.08e-12,73;UBERON:0000955,2.86e-12,47;UBERON:0006238,2.86e-12,47;UBERON:0002616,3.31e-12,46;UBERON:0001016,3.20e-11,75;UBERON:0003528,4.37e-11,29;UBERON:0002791,4.37e-11,29;UBERON:0001893,4.37e-11,29;UBERON:0003080,2.14e-10,40;UBERON:0002346,4.21e-10,64;UBERON:0003075,4.21e-10,64;UBERON:0007284,4.21e-10,64;UBERON:0002780,6.09e-10,39;UBERON:0001890,6.09e-10,39;UBERON:0006240,6.09e-10,39;UBERON:0003056,1.70e-07,49;UBERON:0010314,1.82e-07,92;UBERON:0010371,3.30e-07,73 | |||
|phase1_expression=3.52327463630547,6.97950815278722,5.45999087267443,6.0492842261366,4.50806156951712,4.36486106970913,5.60670337429262,2.84071311571468,0.84473233291,0.468129052643987,3.25314139628459,2.79202556483677,2.05440875917447,0.961624426608971,4.33042690360362,4.85940641735582,7.69518065940961,4.10100814965709,4.11343300817216,6.36584477697045,2.21112554392781,1.48936426801328,1.30599894569468,3.19984845586813,4.12936705920906,4.01962374880514,2.58457197695445,6.24866574789078,2.47030445293286,2.77233142735924,3.76941868114018,3.17515336729816,3.69038872550742,0,5.48818077527422,3.32469290716985,3.06254034393554,6.69650609179052,3.906676722619,4.71171369576418,2.35292595212406,6.83045484958446,6.79714494243615,0.755380907853464,0.912392380975631,0.917733760808408,2.34717403304412,3.05235218932625,3.51497892375155,3.11087838518853,3.77963338388479,0,4.69791296961662,2.17608642603403,2.01656279485478,1.02903774414379,0.85960031981627,0.515672092277442,7.48570905180512,8.99284664762456,6.97214543856797,2.03306719241479,5.33576877666684,0.449949858640699,0.988866362566974,1.4209602298922,1.49800055259202,0.768436610643109,5.08079100311541,6.07526722492608,6.52007380189284,5.99867067247988,3.3130281142742,4.65465037016825,5.36734637702124,7.35375029288017,9.91042928994498,10.214987046815,7.68032666281217,12.0016521834476,14.8209982635904,10.939180781692,11.4465029590566,10.6924895906019,6.72312290217964,2.94628585473668,6.12198227436143,5.40558392893372,0.530083353332288,1.20914496170857,1.15945795480671,0.860423876981386,1.3599426674155,2.69851595818909,1.29955283489534,1.79210754838934,2.10666630197628,0.340860645156116,1.29893002301434,1.41335829804136,3.52108549441701,0,0,0,1.94841936910093,2.78695852022608,3.53867111510348,1.59857431606684,1.03575153458869,0.742210695324124,2.25530924795977,1.21786191324856,2.53677046981664,1.20578112442098,1.41106448562846,0.251333182659351,3.46072954828123,1.3013942122792,5.30766331169925,2.58826959915855,3.09178125844551,1.93950101254089,1.86391761218122,4.68449275218475,4.60782754989601,2.55457055208591,1.43778149407104,4.79922184794726,1.52484272487678,5.39246301857362,4.11750542536764,4.52355667606312,2.60736480288415,1.79000820131231,6.85700547046548,4.54275536589721,1.42575109390443,3.23458123586242,2.52722758433675,1.47309299120532,2.73252930221678,2.98872735763515,1.62055916824814,1.9591626318643,1.63287597963187,1.92170580427275,1.78033276663485,0.258703370739016,3.44908788692548,3.21480336285293,1.05570674498369,3.5071317188412,1.39023624612799,0.696504333044333,1.23469281844766,1.79130840136644,0.702213187313235,2.57347907114715,3.12579849335152,5.59239585845855,3.98694301967864,2.88099298337624,2.3674473558521,2.55793501271625,2.62254091908543,2.55787339225449,3.48755421819505,2.91913355917924,3.29119699826961,1.47750717671186,3.40489000092594,2.19299981137998,2.63460138349261,1.20785776884335,3.15434922846191,4.32199371992995,3.30418782983798,2.11560453330835,1.70630600428187,2.55460339046482,2.19074684247559,4.23535401709019,1.55664630691409,1.52180500890047,0.949058123089023,3.78807595865225,2.01068167040216,2.38747766449381,2.53453313254856,3.59527763461689,1.72910439899755,2.38969527905241,1.70701110857774,2.39921876480431,3.38123207019241,2.03651327845314,1.93952487167626,2.03393877681924,1.83385957660346,1.18088118383682,1.09899109488962,0.987177311374404,1.1858105083486,2.33583148002532,2.55526693647164,2.9232074610031,2.63718157805054,2.17059443777175,3.05551022137704,3.45235364940973,2.43202840162553,1.92192989231657,1.43768206527355,1.86070473834252,0.936113019343682,0.505157755894224,1.79397413521912,0.964887042726734,1.29327233116623,3.22135400009824,1.95557971730431,1.86719594352707,0.938760993154008,1.00503754465089,2.38043640886014,1.17080188714679,0.472905432318573,1.10732344824387,0.637819074629948,0.655453258862952,0.863424909329478,0.867894351489069,0,0.54390568381871,0.983528546038072,1.37968373152366,6.42202359951168,6.79827782234778,0.819674726883377,4.03953483526997,1.57754109708128,1.95219372148319,1.07711698866399,1.43381278771531,2.22798674082394,1.41538265394416,1.21443210502468,2.04579100537918,1.18586333383957,2.89189184779626,0.851640511249612,1.78065603667255,1.79175655288934,0.494910368917606,0,3.15614827001476,3.02323556964751,2.64047111658257,3.2483208216885,2.45948118355142,1.80899805217755,2.18120237686503,0.712994756769443,2.21225730555071,1.05418608574999,1.03135543248187,0.680879211507576,1.44048875225048,3.23396709456886,2.14337035031592,3.01478397191865,1.96205699362278,2.30368628842969,3.65357938937519,3.28540391289194,2.33015277950202,0.441056796109924,1.81374878235628,1.13025098687134,0.844380948994182,0.596861720015682,0.328281799490123,1.1659233465194,9.27126510052548,3.07567585436135,1.23832120777933,1.29636169158798,4.52084296811258,2.7338845544205,2.97411625168479,1.69978429993855,2.09927178485487,2.48759952847963,1.90934123603023,3.00519193902079,1.82987520414164,1.18805874903981,1.25452977608681,1.9652630737156,1.75323650300267,1.07449492442937,0.785267825952089,2.59229946583586,0.621339313086926,3.38215763210514,2.8408143748356,2.48187735685646,3.88902376688095,1.42075805825504,1.520605129417,2.11243029562357,2.47388331203505,1.8874681996628,3.38217769156408,0.864090018773596,1.58005560314089,2.8381530140623,2.05421914329655,1.55904987573354,1.61124026100733,2.38417625737518,1.9231271923195,2.80610101631697,1.41353029927407,2.43861781295999,2.31900225814733,2.0466154955348,2.98256709085021,2.45441494581295,2.49403421976732,5.54964883435162,4.21655126064536,4.86865387455827,2.31827512838629,1.50145980360946,0.915758121336325,0.428736758158132,0,6.21227026878773,1.84130094602871,3.43737308063638,2.40594455281163,4.11049511862385,4.5323633843382,6.75022500231806,2.70192721934532,3.62513927187364,3.62432218226274,3.1136204275253,3.19219898720825,2.56100408631201,1.70174701947806,2.30574478890781,1.83843508450014,2.66696073361938,4.12070114477788,4.1719497246936,1.76888048234658,2.5347929989024,2.45214243801899,1.87283014939765,3.64943368707755,1.60819313075717,0.952587382566147,2.43357084484197,2.50781986602817,2.47251540481984,2.79677948255355,3.08582327146874,2.30718548007139,2.86123427936785,2.47088908274958,2.54095327121393,2.36920902096694,2.0122077016005,2.63069711437843,3.25929873230068,3.36685362994643,2.60997039873183,2.36410757701352,2.04615521584845,1.85924209423159,2.89359916471712,3.49734809113124,2.33931608445408,2.14871054048298,1.14772999241306,2.8676884485537,2.08681052058379 | |phase1_expression=3.52327463630547,6.97950815278722,5.45999087267443,6.0492842261366,4.50806156951712,4.36486106970913,5.60670337429262,2.84071311571468,0.84473233291,0.468129052643987,3.25314139628459,2.79202556483677,2.05440875917447,0.961624426608971,4.33042690360362,4.85940641735582,7.69518065940961,4.10100814965709,4.11343300817216,6.36584477697045,2.21112554392781,1.48936426801328,1.30599894569468,3.19984845586813,4.12936705920906,4.01962374880514,2.58457197695445,6.24866574789078,2.47030445293286,2.77233142735924,3.76941868114018,3.17515336729816,3.69038872550742,0,5.48818077527422,3.32469290716985,3.06254034393554,6.69650609179052,3.906676722619,4.71171369576418,2.35292595212406,6.83045484958446,6.79714494243615,0.755380907853464,0.912392380975631,0.917733760808408,2.34717403304412,3.05235218932625,3.51497892375155,3.11087838518853,3.77963338388479,0,4.69791296961662,2.17608642603403,2.01656279485478,1.02903774414379,0.85960031981627,0.515672092277442,7.48570905180512,8.99284664762456,6.97214543856797,2.03306719241479,5.33576877666684,0.449949858640699,0.988866362566974,1.4209602298922,1.49800055259202,0.768436610643109,5.08079100311541,6.07526722492608,6.52007380189284,5.99867067247988,3.3130281142742,4.65465037016825,5.36734637702124,7.35375029288017,9.91042928994498,10.214987046815,7.68032666281217,12.0016521834476,14.8209982635904,10.939180781692,11.4465029590566,10.6924895906019,6.72312290217964,2.94628585473668,6.12198227436143,5.40558392893372,0.530083353332288,1.20914496170857,1.15945795480671,0.860423876981386,1.3599426674155,2.69851595818909,1.29955283489534,1.79210754838934,2.10666630197628,0.340860645156116,1.29893002301434,1.41335829804136,3.52108549441701,0,0,0,1.94841936910093,2.78695852022608,3.53867111510348,1.59857431606684,1.03575153458869,0.742210695324124,2.25530924795977,1.21786191324856,2.53677046981664,1.20578112442098,1.41106448562846,0.251333182659351,3.46072954828123,1.3013942122792,5.30766331169925,2.58826959915855,3.09178125844551,1.93950101254089,1.86391761218122,4.68449275218475,4.60782754989601,2.55457055208591,1.43778149407104,4.79922184794726,1.52484272487678,5.39246301857362,4.11750542536764,4.52355667606312,2.60736480288415,1.79000820131231,6.85700547046548,4.54275536589721,1.42575109390443,3.23458123586242,2.52722758433675,1.47309299120532,2.73252930221678,2.98872735763515,1.62055916824814,1.9591626318643,1.63287597963187,1.92170580427275,1.78033276663485,0.258703370739016,3.44908788692548,3.21480336285293,1.05570674498369,3.5071317188412,1.39023624612799,0.696504333044333,1.23469281844766,1.79130840136644,0.702213187313235,2.57347907114715,3.12579849335152,5.59239585845855,3.98694301967864,2.88099298337624,2.3674473558521,2.55793501271625,2.62254091908543,2.55787339225449,3.48755421819505,2.91913355917924,3.29119699826961,1.47750717671186,3.40489000092594,2.19299981137998,2.63460138349261,1.20785776884335,3.15434922846191,4.32199371992995,3.30418782983798,2.11560453330835,1.70630600428187,2.55460339046482,2.19074684247559,4.23535401709019,1.55664630691409,1.52180500890047,0.949058123089023,3.78807595865225,2.01068167040216,2.38747766449381,2.53453313254856,3.59527763461689,1.72910439899755,2.38969527905241,1.70701110857774,2.39921876480431,3.38123207019241,2.03651327845314,1.93952487167626,2.03393877681924,1.83385957660346,1.18088118383682,1.09899109488962,0.987177311374404,1.1858105083486,2.33583148002532,2.55526693647164,2.9232074610031,2.63718157805054,2.17059443777175,3.05551022137704,3.45235364940973,2.43202840162553,1.92192989231657,1.43768206527355,1.86070473834252,0.936113019343682,0.505157755894224,1.79397413521912,0.964887042726734,1.29327233116623,3.22135400009824,1.95557971730431,1.86719594352707,0.938760993154008,1.00503754465089,2.38043640886014,1.17080188714679,0.472905432318573,1.10732344824387,0.637819074629948,0.655453258862952,0.863424909329478,0.867894351489069,0,0.54390568381871,0.983528546038072,1.37968373152366,6.42202359951168,6.79827782234778,0.819674726883377,4.03953483526997,1.57754109708128,1.95219372148319,1.07711698866399,1.43381278771531,2.22798674082394,1.41538265394416,1.21443210502468,2.04579100537918,1.18586333383957,2.89189184779626,0.851640511249612,1.78065603667255,1.79175655288934,0.494910368917606,0,3.15614827001476,3.02323556964751,2.64047111658257,3.2483208216885,2.45948118355142,1.80899805217755,2.18120237686503,0.712994756769443,2.21225730555071,1.05418608574999,1.03135543248187,0.680879211507576,1.44048875225048,3.23396709456886,2.14337035031592,3.01478397191865,1.96205699362278,2.30368628842969,3.65357938937519,3.28540391289194,2.33015277950202,0.441056796109924,1.81374878235628,1.13025098687134,0.844380948994182,0.596861720015682,0.328281799490123,1.1659233465194,9.27126510052548,3.07567585436135,1.23832120777933,1.29636169158798,4.52084296811258,2.7338845544205,2.97411625168479,1.69978429993855,2.09927178485487,2.48759952847963,1.90934123603023,3.00519193902079,1.82987520414164,1.18805874903981,1.25452977608681,1.9652630737156,1.75323650300267,1.07449492442937,0.785267825952089,2.59229946583586,0.621339313086926,3.38215763210514,2.8408143748356,2.48187735685646,3.88902376688095,1.42075805825504,1.520605129417,2.11243029562357,2.47388331203505,1.8874681996628,3.38217769156408,0.864090018773596,1.58005560314089,2.8381530140623,2.05421914329655,1.55904987573354,1.61124026100733,2.38417625737518,1.9231271923195,2.80610101631697,1.41353029927407,2.43861781295999,2.31900225814733,2.0466154955348,2.98256709085021,2.45441494581295,2.49403421976732,5.54964883435162,4.21655126064536,4.86865387455827,2.31827512838629,1.50145980360946,0.915758121336325,0.428736758158132,0,6.21227026878773,1.84130094602871,3.43737308063638,2.40594455281163,4.11049511862385,4.5323633843382,6.75022500231806,2.70192721934532,3.62513927187364,3.62432218226274,3.1136204275253,3.19219898720825,2.56100408631201,1.70174701947806,2.30574478890781,1.83843508450014,2.66696073361938,4.12070114477788,4.1719497246936,1.76888048234658,2.5347929989024,2.45214243801899,1.87283014939765,3.64943368707755,1.60819313075717,0.952587382566147,2.43357084484197,2.50781986602817,2.47251540481984,2.79677948255355,3.08582327146874,2.30718548007139,2.86123427936785,2.47088908274958,2.54095327121393,2.36920902096694,2.0122077016005,2.63069711437843,3.25929873230068,3.36685362994643,2.60997039873183,2.36410757701352,2.04615521584845,1.85924209423159,2.89359916471712,3.49734809113124,2.33931608445408,2.14871054048298,1.14772999241306,2.8676884485537,2.08681052058379 | ||
|short_description=p3@Cmas | |short_description=p3@Cmas | ||
}} | }} |
Latest revision as of 21:30, 26 September 2015
Short description: | p3@Cmas |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cmas_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000032419, NM_009908, uc009eps.2_5end |
EntrezGene: | Cmas |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.49e-14 | 23 |
neuroblast (sensu Vertebrata) | 6.49e-14 | 23 |
neuron | 7.15e-08 | 33 |
neuronal stem cell | 7.15e-08 | 33 |
neuroblast | 7.15e-08 | 33 |
electrically signaling cell | 7.15e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.55e-16 | 54 |
neural tube | 1.22e-14 | 52 |
neural rod | 1.22e-14 | 52 |
future spinal cord | 1.22e-14 | 52 |
neural keel | 1.22e-14 | 52 |
gray matter | 7.60e-13 | 34 |
central nervous system | 2.08e-12 | 73 |
brain | 2.86e-12 | 47 |
future brain | 2.86e-12 | 47 |
regional part of brain | 3.31e-12 | 46 |
nervous system | 3.20e-11 | 75 |
brain grey matter | 4.37e-11 | 29 |
regional part of telencephalon | 4.37e-11 | 29 |
telencephalon | 4.37e-11 | 29 |
anterior neural tube | 2.14e-10 | 40 |
neurectoderm | 4.21e-10 | 64 |
neural plate | 4.21e-10 | 64 |
presumptive neural plate | 4.21e-10 | 64 |
regional part of forebrain | 6.09e-10 | 39 |
forebrain | 6.09e-10 | 39 |
future forebrain | 6.09e-10 | 39 |
pre-chordal neural plate | 1.70e-07 | 49 |
structure with developmental contribution from neural crest | 1.82e-07 | 92 |
ecto-epithelium | 3.30e-07 | 73 |