FFCP PHASE1:Hg19::chr12:104319259..104319279,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:104319259..104319279,+ | |||
|coexpression_cluster_id=C205 | |||
|description=CAGE_peak_at_chr12:104319259..104319279,+ | |description=CAGE_peak_at_chr12:104319259..104319279,+ | ||
|id=chr12:104319259..104319279,+ | |id=chr12:104319259..104319279,+ | ||
|ontology_enrichment_celltype=CL:0000838!6.53e-17!52;CL:0000542!1.70e-16!53;CL:0000051!1.70e-16!53;CL:0000945!1.74e-11!24;CL:0000826!1.74e-11!24;CL:0002551!9.38e-08!6 | |ontology_enrichment_celltype=CL:0000838!6.53e-17!52;CL:0000542!1.70e-16!53;CL:0000051!1.70e-16!53;CL:0000945!1.74e-11!24;CL:0000826!1.74e-11!24;CL:0002551!9.38e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000945;9.74e-25;24!CL:0000946;5.85e-14;1!CL:0000786;5.85e-14;1!CL:0000542;5.98e-12;53!CL:0001014;1.99e-07;2!CL:0001016;1.99e-07;2!CL:0002253;1.99e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,8.59e-25,24;CL:0000826,8.59e-25,24;CL:0000838,1.05e-22,52;CL:0000542,2.95e-22,53;CL:0000051,2.95e-22,53;CL:0000946,5.85e-14,1;CL:0000786,5.85e-14,1;CL:0000980,5.85e-14,1;CL:0000988,4.83e-12,177;CL:0002031,4.74e-11,120;CL:0000738,1.35e-09,136;CL:0002087,1.59e-09,115;CL:0002032,6.83e-08,161;CL:0000837,6.83e-08,161;CL:0000785,1.28e-07,2;CL:0000955,1.28e-07,2;CL:0000818,1.28e-07,2;CL:0000954,1.28e-07,2;CL:0000816,1.28e-07,2;CL:0002253,1.64e-07,2;CL:0000037,1.67e-07,168;CL:0001014,2.25e-07,2;CL:0001016,2.25e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000051;5.98e-12;53!CL:0000954;1.27e-07;2 | |||
|ontology_enrichment_disease=DOID:0060058!3.32e-11!10 | |ontology_enrichment_disease=DOID:0060058!3.32e-11!10 | ||
|ontology_enrichment_disease_v019=DOID:0060060;3.08e-14;1!DOID:0060061;3.08e-14;1!DOID:8691;3.08e-14;1!DOID:630;3.73e-14;1!DOID:0050177;3.73e-14;1!DOID:0050427;3.73e-14;1!DOID:2355;1.42e-13;1!DOID:0060058;8.42e-12;10!DOID:74;1.99e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,3.08e-14,1;DOID:0060061,3.08e-14,1;DOID:8691,3.08e-14,1;DOID:630,3.50e-14,1;DOID:0050177,3.50e-14,1;DOID:0050427,3.50e-14,1;DOID:2355,1.10e-13,1;DOID:0060058,8.74e-12,10;DOID:74,1.75e-07,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;4.73e-12;10!UBERON:0000178;3.26e-08;15!UBERON:0000179;3.26e-08;15!UBERON:0000463;3.26e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,4.82e-12,10;UBERON:0000358,4.82e-12,10;UBERON:0000307,4.82e-12,10;UBERON:0000091,4.82e-12,10;UBERON:0000087,4.82e-12,10;UBERON:0007010,4.82e-12,10;UBERON:0007806,4.82e-12,10;UBERON:0008780,4.82e-12,10;UBERON:0005728,4.82e-12,10;UBERON:0000178,3.30e-08,15;UBERON:0000179,3.30e-08,15;UBERON:0000463,3.30e-08,15 | |||
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| ||
|short_description=p@chr12:104319259..104319279,+ | |short_description=p@chr12:104319259..104319279,+ | ||
}} | }} |
Latest revision as of 04:14, 24 July 2015
Short description: | p@chr12:104319259..104319279, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:104319259..104319279, + |
Coexpression cluster: | C205_mycosis_cord_hairy_xeroderma_CD4_B_b |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 8.59e-25 | 24 |
pro-B cell | 8.59e-25 | 24 |
lymphoid lineage restricted progenitor cell | 1.05e-22 | 52 |
lymphocyte | 2.95e-22 | 53 |
common lymphoid progenitor | 2.95e-22 | 53 |
antibody secreting cell | 5.85e-14 | 1 |
plasma cell | 5.85e-14 | 1 |
plasmablast | 5.85e-14 | 1 |
hematopoietic cell | 4.83e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 4.74e-11 | 120 |
leukocyte | 1.35e-09 | 136 |
nongranular leukocyte | 1.59e-09 | 115 |
hematopoietic oligopotent progenitor cell | 6.83e-08 | 161 |
hematopoietic multipotent progenitor cell | 6.83e-08 | 161 |
mature B cell | 1.28e-07 | 2 |
pre-B-II cell | 1.28e-07 | 2 |
transitional stage B cell | 1.28e-07 | 2 |
small pre-B-II cell | 1.28e-07 | 2 |
immature B cell | 1.28e-07 | 2 |
epithelial cell of large intestine | 1.64e-07 | 2 |
hematopoietic stem cell | 1.67e-07 | 168 |
CD1a-positive Langerhans cell | 2.25e-07 | 2 |
immature CD1a-positive Langerhans cell | 2.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 4.82e-12 | 10 |
blastocyst | 4.82e-12 | 10 |
blastula | 4.82e-12 | 10 |
bilaminar disc | 4.82e-12 | 10 |
inner cell mass | 4.82e-12 | 10 |
cleaving embryo | 4.82e-12 | 10 |
connecting stalk | 4.82e-12 | 10 |
inner cell mass derived epiblast | 4.82e-12 | 10 |
extraembryonic mesoderm | 4.82e-12 | 10 |
blood | 3.30e-08 | 15 |
haemolymphatic fluid | 3.30e-08 | 15 |
organism substance | 3.30e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 3.08e-14 | 1 |
cutaneous T cell lymphoma | 3.08e-14 | 1 |
mycosis fungoides | 3.08e-14 | 1 |
genetic disease | 3.50e-14 | 1 |
monogenic disease | 3.50e-14 | 1 |
xeroderma pigmentosum | 3.50e-14 | 1 |
anemia | 1.10e-13 | 1 |
lymphoma | 8.74e-12 | 10 |
hematopoietic system disease | 1.75e-07 | 2 |