FFCP PHASE1:Hg19::chr14:64522718..64522734,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23224 | |EntrezGene=23224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=17084 | |HGNC=17084 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=72bp_to_uc010apw.1_5end | |association_with_transcript=72bp_to_uc010apw.1_5end | ||
|cluster_id=chr14:64522718..64522734,+ | |||
|coexpression_cluster_id=C2307 | |||
|description=CAGE_peak_4_at_SYNE2_5end | |description=CAGE_peak_4_at_SYNE2_5end | ||
|id=chr14:64522718..64522734,+ | |id=chr14:64522718..64522734,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000624;2.88e-17;6!CL:0000775;3.42e-16;3!CL:0000623;1.42e-15;3!CL:0000791;2.82e-15;18!CL:0000789;2.82e-15;18!CL:0002419;2.82e-15;18!CL:0000313;8.34e-13;1!CL:0000084;5.55e-11;25!CL:0000159;4.96e-07;2!CL:0000815;8.76e-07;2!CL:0000792;8.76e-07;2!CL:0002677;8.76e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,2.81e-17,6;CL:0000775,3.69e-16,3;CL:0000623,1.22e-15,3;CL:0000825,1.22e-15,3;CL:0000791,2.79e-15,18;CL:0000789,2.79e-15,18;CL:0002420,2.79e-15,18;CL:0002419,2.79e-15,18;CL:0000790,2.79e-15,18;CL:0000313,7.89e-13,1;CL:0000838,1.07e-12,52;CL:0000542,1.92e-12,53;CL:0000051,1.92e-12,53;CL:0000084,5.50e-11,25;CL:0000827,5.50e-11,25;CL:0000159,4.83e-07,2;CL:0000815,6.80e-07,2;CL:0000792,6.80e-07,2;CL:0002677,6.80e-07,2;CL:0000738,9.30e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;2.82e-15;18!UBERON:0004874;2.60e-12;1 | |||
|ontology_enrichment_disease=DOID:305!2.00e-10!106;DOID:0050687!6.10e-10!143;DOID:162!3.24e-08!235;DOID:14566!1.32e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:2152;8.34e-13;1!DOID:4468;8.76e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,7.89e-13,1;DOID:4468,7.61e-07,2 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0004911;8.34e-13;1!UBERON:0000989;2.60e-12;1!UBERON:0008811;2.60e-12;1!UBERON:0004909;4.96e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,7.89e-13,1;UBERON:0000989,2.75e-12,1;UBERON:0008811,2.75e-12,1;UBERON:0006258,2.75e-12,1;UBERON:0005876,2.75e-12,1;UBERON:0004874,2.75e-12,1;UBERON:0004909,4.83e-07,2 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0.273748850145768,0.376627918784408,0,0,0,0,0,0,0,0,0,0.542270404062111,0.568676929949686,0,0,0.601633342410425,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0.196709770113833,3.14408610199332,1.23360899399706,0.501559486172034,0,0.946895611469467,0,0,1.76763544484902,0.443067789167242,0.270803863765016,0.25618263945135,1.1705341280389,0.164437904603676,0.552700035571697,0.289803085735052,0.296573126324121,0.267540828089713,0,0.566546713487831,0.383220493601921,2.40539211837841,0.759059076058509,0.637130828648193,0,0,0,0,0,0,0,0.604820229674197,1.87208137048455,1.01377082717959,0,0.670700859703636,0,0,0,0,0,0,0.378139268656271,0,0.175669571386252,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.358779271377724,0.213557388818567,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,0.236613600079688,0.168584690078102,0.723033089650446,0.110293972732394,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,1.26755034821831,0,0,0.882926198829301,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0.190493682876507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,0.591092280605782,1.50939302401662,1.54011643535698,0.254094624222463,0,0,0.167516265334349,0.637938751653163,2.24702107184155,8.97484377612075,0.414415513436035,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.640365346820666,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368323955743585,0,0,0,0,0.15403067420883,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0,0,0.145016693914229,0.170453254832202,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0.79312517629427,0,0,0,0.371606350251437,0,0.284567373393656,0.478278818186467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.121360521749513,0.222886768554957,0.284136146806413,0.23874448473769,0.296964680832639,0.614321404198464,0,0,0.111308705022906,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0.260427761085233,0,0,0.1137934482855,0,0.236387681767936,0,0.291604613383254,0.347249989866585,0,0.120596438625408,0,0.110579259931225,0,0,0.10893846351899,0.557694977114413,0.153900517007594,0.113942055847001,0,0.359030577639089,0.54323685961004,0.638002319463839,0,0,0,0,0,0,0,0,0,0,1.68798451622422,0.489698424477443,0,0,0,0,0,0.296521128680622,0,0,0.067401132980677,0,0,0.182454789215666,0.19566461893209,0.242780379534093,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0.554698692052555,0.347119476670262,0.0979923974143777,0.261177619741208,0.17472666824203,0,0.0967563312890851,0.146178634172371,0.164230914106418,0,0,0.225980740780532,0,0,0,0.195551382734803,0,0,0.19980960958213,0.432271251462318,0,0,0.432164393964449,0.124252535565433,0.235694034616795,0,0,0,0,0,0.136905378891993,0,0.429765441419957,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0,0,0.157566364614447,0.0824158583811665,0.13480708770837,0,0,0,0,0.321506296930038,0,0,0,0,0,0.335434687599266,0.788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0,0,0.828478110694391,0,0.197611631897944,0.487170393523584,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0.276697269872462,0,0,0.285465333544967,0,0.936669811613763,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0.260994291965212,0,0.231522474323834,0.489473409012935,0,0,0.219284049578707,0.176689145945881,0,0,0.256241518587947,0.690860683462397,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0.39997479170986,0,0,0,0.184105950251841,0,0,0,0,0,0.54604819096007,0,0.212574920101683,0.123935764259002,0,0,0.0788617450012534,0,0.352675943690684,0,0,0,0,0,0.504143392443436,0,0,0,0,0,0.366857197043358,0.462102664601353,0,0,0,0.150420656698515,0,0,0.785720083444267,0.327543835020193,0.147856086217045,0,0.781078098613847,0,0,0.546974809018219,0,1.48863353516788,0.175871244359621,0,0,0,0.606965604236632,0,0.266107110487916,0.345701962667338,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0.47404083519818,0.116241425368125,0,0,0.207216164163037,0.6828739083758,0,0,0,0,0,0,0,0.955538938977433,3.57937381752935,0.294450700845729,0.487671699929078,0.647428837187895,0.102662806856247,0,0.971421986118279,0.233939463462106,0.198950775161368,0.356760272332706,0,0.659643100472575,0.301925687133347,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0.0999411559249289,0,0,0.0802413666891683,0,0.458729283404541,0.286679166302903,0.157771562193185,0,0,0.5290268405154,0,0,0,0.252332849670158,0.109265571963696,0.126698501011437,0.101988829741982,0.26721740526556,0.0918948995348449,0,0,0.267964130156178,0,0,0.213233981900981,0.23806443146374,0.129177819672012,0,0,0.318235791390825,1.41482032270754,0.870866991587845,0,0,0,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0.273748850145768,0.376627918784408,0,0,0,0,0,0,0,0,0,0.542270404062111,0.568676929949686,0,0,0.601633342410425,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0.196709770113833,3.14408610199332,1.23360899399706,0.501559486172034,0,0.946895611469467,0,0,1.76763544484902,0.443067789167242,0.270803863765016,0.25618263945135,1.1705341280389,0.164437904603676,0.552700035571697,0.289803085735052,0.296573126324121,0.267540828089713,0,0.566546713487831,0.383220493601921,2.40539211837841,0.759059076058509,0.637130828648193,0,0,0,0,0,0,0,0.604820229674197,1.87208137048455,1.01377082717959,0,0.670700859703636,0,0,0,0,0,0,0.378139268656271,0,0.175669571386252,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.358779271377724,0.213557388818567,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,0.236613600079688,0.168584690078102,0.723033089650446,0.110293972732394,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,1.26755034821831,0,0,0.882926198829301,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0.190493682876507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,0.591092280605782,1.50939302401662,1.54011643535698,0.254094624222463,0,0,0.167516265334349,0.637938751653163,2.24702107184155,8.97484377612075,0.414415513436035,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.640365346820666,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368323955743585,0,0,0,0,0.15403067420883,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0,0,0.145016693914229,0.170453254832202,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0.79312517629427,0,0,0,0.371606350251437,0,0.284567373393656,0.478278818186467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.121360521749513,0.222886768554957,0.284136146806413,0.23874448473769,0.296964680832639,0.614321404198464,0,0,0.111308705022906,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0.260427761085233,0,0,0.1137934482855,0,0.236387681767936,0,0.291604613383254,0.347249989866585,0,0.120596438625408,0,0.110579259931225,0,0,0.10893846351899,0.557694977114413,0.153900517007594,0.113942055847001,0,0.359030577639089,0.54323685961004,0.638002319463839,0,0,0,0,0,0,0,0,0,0,1.68798451622422,0.489698424477443,0,0,0,0,0,0.296521128680622,0,0,0.067401132980677,0,0,0.182454789215666,0.19566461893209,0.242780379534093,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0.554698692052555,0.347119476670262,0.0979923974143777,0.261177619741208,0.17472666824203,0,0.0967563312890851,0.146178634172371,0.164230914106418,0,0,0.225980740780532,0,0,0,0.195551382734803,0,0,0.19980960958213,0.432271251462318,0,0,0.432164393964449,0.124252535565433,0.235694034616795,0,0,0,0,0,0.136905378891993,0,0.429765441419957,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0,0,0.157566364614447,0.0824158583811665,0.13480708770837,0,0,0,0,0.321506296930038,0,0,0,0,0,0.335434687599266,0.788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0,0,0.828478110694391,0,0.197611631897944,0.487170393523584,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0.276697269872462,0,0,0.285465333544967,0,0.936669811613763,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0.260994291965212,0,0.231522474323834,0.489473409012935,0,0,0.219284049578707,0.176689145945881,0,0,0.256241518587947,0.690860683462397,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0.39997479170986,0,0,0,0.184105950251841,0,0,0,0,0,0.54604819096007,0,0.212574920101683,0.123935764259002,0,0,0.0788617450012534,0,0.352675943690684,0,0,0,0,0,0.504143392443436,0,0,0,0,0,0.366857197043358,0.462102664601353,0,0,0,0.150420656698515,0,0,0.785720083444267,0.327543835020193,0.147856086217045,0,0.781078098613847,0,0,0.546974809018219,0,1.48863353516788,0.175871244359621,0,0,0,0.606965604236632,0,0.266107110487916,0.345701962667338,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0.47404083519818,0.116241425368125,0,0,0.207216164163037,0.6828739083758,0,0,0,0,0,0,0,0.955538938977433,3.57937381752935,0.294450700845729,0.487671699929078,0.647428837187895,0.102662806856247,0,0.971421986118279,0.233939463462106,0.198950775161368,0.356760272332706,0,0.659643100472575,0.301925687133347,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0.0999411559249289,0,0,0.0802413666891683,0,0.458729283404541,0.286679166302903,0.157771562193185,0,0,0.5290268405154,0,0,0,0.252332849670158,0.109265571963696,0.126698501011437,0.101988829741982,0.26721740526556,0.0918948995348449,0,0,0.267964130156178,0,0,0.213233981900981,0.23806443146374,0.129177819672012,0,0,0.318235791390825,1.41482032270754,0.870866991587845,0,0,0,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p4@SYNE2 | |short_description=p4@SYNE2 | ||
}} | }} |
Latest revision as of 00:46, 25 September 2015
Short description: | p4@SYNE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SYNE2_5end |
Coexpression cluster: | C2307_Neutrophils_serous_CD8_Natural_CD4_thyroid_carcinosarcoma |
Association with transcript: | 72bp_to_uc010apw.1_5end |
EntrezGene: | SYNE2 |
HGNC: | 17084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 2.81e-17 | 6 |
neutrophil | 3.69e-16 | 3 |
natural killer cell | 1.22e-15 | 3 |
pro-NK cell | 1.22e-15 | 3 |
mature alpha-beta T cell | 2.79e-15 | 18 |
alpha-beta T cell | 2.79e-15 | 18 |
immature T cell | 2.79e-15 | 18 |
mature T cell | 2.79e-15 | 18 |
immature alpha-beta T cell | 2.79e-15 | 18 |
serous secreting cell | 7.89e-13 | 1 |
lymphoid lineage restricted progenitor cell | 1.07e-12 | 52 |
lymphocyte | 1.92e-12 | 53 |
common lymphoid progenitor | 1.92e-12 | 53 |
T cell | 5.50e-11 | 25 |
pro-T cell | 5.50e-11 | 25 |
seromucus secreting cell | 4.83e-07 | 2 |
regulatory T cell | 6.80e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.80e-07 | 2 |
naive regulatory T cell | 6.80e-07 | 2 |
leukocyte | 9.30e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 7.89e-13 | 1 |
penis | 2.75e-12 | 1 |
intromittent organ | 2.75e-12 | 1 |
lateral plate mesenchyme | 2.75e-12 | 1 |
undifferentiated genital tubercle | 2.75e-12 | 1 |
somatopleure | 2.75e-12 | 1 |
epithelium of gonad | 4.83e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 7.89e-13 | 1 |
clear cell adenocarcinoma | 7.61e-07 | 2 |