FFCP PHASE1:Hg19::chr11:27723140..27723153,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr11:27723140..27723153,-
|short_description=p6@BDNF
|description=CAGE_peak_6_at_BDNF_5end
|association_with_transcript=26bp_to_ENST00000395980,NM_170733,uc001...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=627 | |EntrezGene=627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1033 | |HGNC=1033 | ||
|TSSclassifier=strong | |||
|UniProt=P23560 | |UniProt=P23560 | ||
|association_with_transcript=26bp_to_ENST00000395980,NM_170733,uc001mrv.2_5end | |||
|cluster_id=chr11:27723140..27723153,- | |||
|coexpression_cluster_id=C1629 | |||
|description=CAGE_peak_6_at_BDNF_5end | |||
|id=chr11:27723140..27723153,- | |||
|ontology_enrichment_celltype=CL:0000055!1.25e-25!180;CL:0000192!7.17e-15!42;CL:0000514!7.17e-15!42;CL:0000057!1.29e-14!75;CL:0000187!5.98e-13!54;CL:0000680!4.13e-12!57;CL:0000056!4.13e-12!57;CL:0000355!4.13e-12!57;CL:0000183!5.09e-12!59;CL:0000359!5.57e-12!32;CL:0000393!8.39e-11!60;CL:0000211!8.39e-11!60;CL:0000222!3.64e-08!119;CL:0002620!1.31e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.73e-12;23!CL:0000359;3.61e-10;32!CL:0000192;2.92e-08;43!CL:0002595;5.11e-08;5!CL:0002504;3.54e-07;3!CL:1000279;3.54e-07;3!CL:1000280;3.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.09e-12,43;CL:0000514,1.09e-12,43;CL:0002620,2.42e-12,23;CL:0000359,4.79e-11,32;CL:0000057,8.71e-11,76;CL:0000187,6.31e-09,55;CL:0000680,3.07e-08,58;CL:0000056,3.07e-08,58;CL:0000355,3.07e-08,58;CL:0002595,3.55e-08,5;CL:0000222,4.60e-08,121;CL:0000393,1.27e-07,61;CL:0000211,1.27e-07,61;CL:0000723,5.31e-07,433;CL:0002504,6.08e-07,3;CL:1000279,6.08e-07,3;CL:1000280,6.08e-07,3;CL:0000048,7.93e-07,427 | |||
|ontology_enrichment_development_v019=CL:0000514;2.92e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;6.36e-08;5!DOID:450;6.36e-08;5!DOID:66;6.36e-08;5!DOID:423;6.36e-08;5!DOID:0080000;6.36e-08;5!DOID:11722;6.36e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.09e-07,5;DOID:450,1.09e-07,5;DOID:66,1.09e-07,5;DOID:423,1.09e-07,5;DOID:0080000,1.09e-07,5;DOID:11722,1.09e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.43e-12!365;UBERON:0001134!2.19e-10!61;UBERON:0002036!2.19e-10!61;UBERON:0003082!2.19e-10!61;UBERON:0002385!1.27e-09!63;UBERON:0001015!1.27e-09!63;UBERON:0000383!1.27e-09!63;UBERON:0000914!2.61e-09!83;UBERON:0002329!2.61e-09!83;UBERON:0003077!2.61e-09!83;UBERON:0003059!2.61e-09!83;UBERON:0007282!2.61e-09!83;UBERON:0009618!2.61e-09!83;UBERON:0007285!2.61e-09!83;UBERON:0001637!6.10e-09!42;UBERON:0003509!6.10e-09!42;UBERON:0004572!6.10e-09!42;UBERON:0004290!6.21e-09!70;UBERON:0004573!4.96e-08!33;UBERON:0004571!4.96e-08!33;UBERON:0002049!5.83e-08!79;UBERON:0007798!5.83e-08!79;UBERON:0000477!1.03e-07!286;UBERON:0000481!3.71e-07!347;UBERON:0005256!4.16e-07!143;UBERON:0000486!5.83e-07!82;UBERON:0000483!7.62e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.47e-08;41!UBERON:0003513;2.37e-08;7!UBERON:0004573;4.94e-08;33!UBERON:0004571;4.94e-08;33!UBERON:0003834;5.11e-08;5!UBERON:0001533;5.11e-08;5!UBERON:0002199;8.08e-07;46!UBERON:0002416;8.08e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,7.09e-11,41;UBERON:0002199,2.97e-09,46;UBERON:0002416,2.97e-09,46;UBERON:0004573,5.66e-09,33;UBERON:0004571,5.66e-09,33;UBERON:0001637,7.13e-09,42;UBERON:0003509,7.13e-09,42;UBERON:0004572,7.13e-09,42;UBERON:0003513,1.60e-08,7;UBERON:0007524,2.59e-08,73;UBERON:0003834,3.55e-08,5;UBERON:0001533,3.55e-08,5;UBERON:0002329,8.60e-08,71;UBERON:0003059,8.60e-08,71;UBERON:0007282,8.60e-08,71;UBERON:0004290,8.60e-08,71;UBERON:0009618,8.60e-08,71;UBERON:0003077,1.28e-07,72;UBERON:0007285,1.28e-07,72;UBERON:0000486,1.49e-07,83;UBERON:0002049,1.68e-07,78;UBERON:0007798,1.68e-07,78;UBERON:0001134,1.96e-07,62;UBERON:0002036,1.96e-07,62;UBERON:0003082,1.96e-07,62;UBERON:0007500,4.46e-07,59;UBERON:0001981,4.46e-07,59;UBERON:0004537,4.46e-07,59;UBERON:0006965,4.46e-07,59;UBERON:0002385,4.53e-07,64;UBERON:0001015,4.53e-07,64;UBERON:0000383,4.53e-07,64 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0.563817616383885,1.0007329835313,0,0.872338524100369,0,0,0,0.245733936501509,0,0,0,0,0,2.6893005858071,0,0.730310090387373,0.487932798790507,0,0.408001382488506,0,0,0,0.125542639594803,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.361439152384566,0.50133791063589,1.59331170856906,0,0,0.472674085820339,1.99556457716308,1.40535657109002,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0.633152558322899,1.72131935057184,1.14734648299525,1.06400514659507,1.12135520028461,0,0.49333509683432,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0,0,0,0.61246251376468,0.122834317311768,0.206651562351531,1.18800285728205,0.247266929278557,0,0.718618141816238,0.168336113954066,0.125118519871964,0,0.438977620880838,0.919463387397059,2.70428506031874,0.113432183160021,2.87023417102179,1.2813443329114,0.423863802319124,4.50136644126603,1.03052529238439,2.31876486041066,1.11670113798954,2.19409231913646,1.65642908774038,2.52433774244115,0.460249493211497,1.61646056818812,6.03516307278244,3.12331504505685,0.67824236924195,0,0,0,0,0,0,0,0,0,0,1.28648187638577,4.14404764057442,0,0,0.473227200159376,0.337169380156203,0.482022059766964,0.441175890929576,0.435758888184812,0.237270619111097,0.269662616320329,0,0,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,1.44331342025273,0,1.05667824812239,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.205654985406647,0,0,0,0,0,1.68053230485111,0,0,0,1.04007436911366,0,0,0,0.285955987316295,0.542621605391443,0,0,0.355391948742546,0.791951872933429,0.602878754119172,0,0.99972991182057,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0.630809660135739,0,0.300946099727719,0,0,0.664225598535437,1.29058417979192,0.60818530127658,0,0,0,0,0,0,0,0,0.248107807818777,1.38115775959256,1.12264037773229,1.28139149255701,0.511707249066704,1.12597744800525,0,0.154209693802656,0,0.492762936082855,0.519254429183621,0.348631135379878,0,0.200506470303285,0.0920809889358963,1.83703117063371,0.546273504020151,1.18011973463482,0,0,0,0,0,0,0.340187410553031,0.431831832204279,0,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,0.256450125116389,0,0,0.103041011647722,1.37354197227515,1.56768049849117,0,0,0,0.290012154876366,0,0.15350367472613,0.137836572484531,0.107420244868274,0,0.0852266274161009,0.178064071293475,0,0,0,0,2.78907329578371,8.81474571125792,0.6970372701606,0.308033580176089,0,0.869932992075073,0.9266210955196,1.14499909393593,0.372158369359667,0.632758849437452,1.14378116354295,0.511795582622668,0,0.318203247925937,0,1.07923474549989,1.09814811894422,1.7671860351853,0.606547444719948,1.58510321173008,1.26377536871694,0.975267478179181,1.70599442741899,5.28250733783777,0.409499734223957,1.55545975149084,0,0,3.3171948762061,1.31535265576129,0.578775534266688,0,2.43492452355245,0.92947049429925,0.563391205064483,0,1.17898849215745,1.426684205925,0,1.26664581178598,0,0,1.39973888097993,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321176150207399,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,0.146508179271894,0.121360521749513,0,0,0.23874448473769,0,0,0.994147647766298,0.422008249231538,0.556543525114529,0,0,0.398495976502139,0,0,0.20453736500431,0,2.48831670129446,0.0898683511473268,0,0,0.197286811273867,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0.1137934482855,0.508507300585533,0,0.344743373241465,0,0.173624994933292,0,0,0,0.663475559587348,0.295547618953547,0.658156191461918,0.32681539055697,0,0,1.59518878185802,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0.141353071433941,0,0,0,0,0,0.494255755786011,0.730953646538188,0.134802265961354,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0.661983911750998,0.313932918407225,0,0,0.693373365065693,0.347119476670262,0,0.261177619741208,0.17472666824203,0.859930162358083,0,0.0730893170861856,0,0,0,0,0.548167698587004,0.397429223405979,0.823040347426423,0,0.881747022766871,0,0.799238438328521,0,0,0,0.432164393964449,0.621262677827163,0,0.815425236441684,0.523014231561666,0.407992870545287,0.577901179803038,0,0,0,1.71906176567983,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,4.68389848605125,0,0,0,0,0,0,1.59045937961861,0.408610218334727,0,0,0,0,0,0.789744236554321,0,0.0788057072991982,0,1.79520572082991,2.51002275065983,0,0,0.662091970365432,0,0.542999601753713,2.5926644736038,0,0,0,5.11164065356265,0.453248366080503,0,0,0,0.13223260174269,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0.157054096250234,0,0.854183854313742,0.250381861413,0,0.110929051536852,0.248385611765534,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| ||
|short_description=p6@BDNF | |||
}} | }} |
Latest revision as of 12:34, 17 September 2015
Short description: | p6@BDNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_BDNF_5end |
Coexpression cluster: | C1629_hepatic_spindle_Fibroblast_Smooth_liposarcoma_papillary_Ciliary |
Association with transcript: | 26bp_to_ENST00000395980, NM_170733, uc001mrv.2_5end |
EntrezGene: | BDNF |
HGNC: | 1033 |
UniProt: | P23560 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.09e-12 | 43 |
smooth muscle myoblast | 1.09e-12 | 43 |
skin fibroblast | 2.42e-12 | 23 |
vascular associated smooth muscle cell | 4.79e-11 | 32 |
fibroblast | 8.71e-11 | 76 |
muscle cell | 6.31e-09 | 55 |
muscle precursor cell | 3.07e-08 | 58 |
myoblast | 3.07e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.07e-08 | 58 |
smooth muscle cell of the subclavian artery | 3.55e-08 | 5 |
mesodermal cell | 4.60e-08 | 121 |
electrically responsive cell | 1.27e-07 | 61 |
electrically active cell | 1.27e-07 | 61 |
somatic stem cell | 5.31e-07 | 433 |
enteric smooth muscle cell | 6.08e-07 | 3 |
smooth muscle cell of large intestine | 6.08e-07 | 3 |
smooth muscle cell of colon | 6.08e-07 | 3 |
multi fate stem cell | 7.93e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
skin of body | 7.09e-11 | 41 |
integument | 2.97e-09 | 46 |
integumental system | 2.97e-09 | 46 |
systemic artery | 5.66e-09 | 33 |
systemic arterial system | 5.66e-09 | 33 |
artery | 7.13e-09 | 42 |
arterial blood vessel | 7.13e-09 | 42 |
arterial system | 7.13e-09 | 42 |
trunk blood vessel | 1.60e-08 | 7 |
dense mesenchyme tissue | 2.59e-08 | 73 |
thoracic segment blood vessel | 3.55e-08 | 5 |
subclavian artery | 3.55e-08 | 5 |
somite | 8.60e-08 | 71 |
presomitic mesoderm | 8.60e-08 | 71 |
presumptive segmental plate | 8.60e-08 | 71 |
dermomyotome | 8.60e-08 | 71 |
trunk paraxial mesoderm | 8.60e-08 | 71 |
paraxial mesoderm | 1.28e-07 | 72 |
presumptive paraxial mesoderm | 1.28e-07 | 72 |
multilaminar epithelium | 1.49e-07 | 83 |
vasculature | 1.68e-07 | 78 |
vascular system | 1.68e-07 | 78 |
skeletal muscle tissue | 1.96e-07 | 62 |
striated muscle tissue | 1.96e-07 | 62 |
myotome | 1.96e-07 | 62 |
epithelial tube open at both ends | 4.46e-07 | 59 |
blood vessel | 4.46e-07 | 59 |
blood vasculature | 4.46e-07 | 59 |
vascular cord | 4.46e-07 | 59 |
muscle tissue | 4.53e-07 | 64 |
musculature | 4.53e-07 | 64 |
musculature of body | 4.53e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.09e-07 | 5 |
myotonic disease | 1.09e-07 | 5 |
muscle tissue disease | 1.09e-07 | 5 |
myopathy | 1.09e-07 | 5 |
muscular disease | 1.09e-07 | 5 |
myotonic dystrophy | 1.09e-07 | 5 |