FFCP PHASE1:Hg19::chr1:209941965..209941977,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80342 | |EntrezGene=80342 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30766 | |HGNC=30766 | ||
|TSSclassifier=strong | |||
|UniProt=C9JBA0 | |UniProt=C9JBA0 | ||
|association_with_transcript=5bp_to_ENST00000477431_5end | |association_with_transcript=5bp_to_ENST00000477431_5end | ||
|cluster_id=chr1:209941965..209941977,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_7_at_TRAF3IP3_5end | |description=CAGE_peak_7_at_TRAF3IP3_5end | ||
|id=chr1:209941965..209941977,+ | |id=chr1:209941965..209941977,+ | ||
|ontology_enrichment_celltype=CL:0000738!5.56e-65!140;CL:0002087!2.47e-58!119;CL:0002031!2.22e-54!124;CL:0000037!2.66e-54!172;CL:0000566!2.66e-54!172;CL:0000988!1.37e-53!182;CL:0002032!1.28e-50!165;CL:0000837!1.28e-50!165;CL:0000542!5.67e-41!53;CL:0000051!5.67e-41!53;CL:0000838!2.56e-40!52;CL:0000084!1.02e-27!25;CL:0000827!1.02e-27!25;CL:0000791!2.07e-23!18;CL:0000789!2.07e-23!18;CL:0002420!2.07e-23!18;CL:0002419!2.07e-23!18;CL:0000790!2.07e-23!18;CL:0000766!1.68e-22!76;CL:0002057!5.68e-19!42;CL:0000839!8.35e-18!70;CL:0000557!2.23e-17!71;CL:0000860!4.72e-17!45;CL:0002194!1.14e-16!63;CL:0000576!1.14e-16!63;CL:0000040!1.14e-16!63;CL:0000559!1.14e-16!63;CL:0002009!8.25e-16!65;CL:0000763!8.67e-16!112;CL:0000049!8.67e-16!112;CL:0000625!7.04e-15!11;CL:0000945!6.22e-12!24;CL:0000826!6.22e-12!24;CL:0000236!2.32e-11!14;CL:0000134!2.14e-10!358;CL:0002320!4.11e-10!365;CL:0000624!6.58e-09!6;CL:0002393!1.90e-08!9;CL:0002397!1.90e-08!9;CL:0000219!2.31e-07!390;CL:0000080!3.28e-07!6 | |ontology_enrichment_celltype=CL:0000738!5.56e-65!140;CL:0002087!2.47e-58!119;CL:0002031!2.22e-54!124;CL:0000037!2.66e-54!172;CL:0000566!2.66e-54!172;CL:0000988!1.37e-53!182;CL:0002032!1.28e-50!165;CL:0000837!1.28e-50!165;CL:0000542!5.67e-41!53;CL:0000051!5.67e-41!53;CL:0000838!2.56e-40!52;CL:0000084!1.02e-27!25;CL:0000827!1.02e-27!25;CL:0000791!2.07e-23!18;CL:0000789!2.07e-23!18;CL:0002420!2.07e-23!18;CL:0002419!2.07e-23!18;CL:0000790!2.07e-23!18;CL:0000766!1.68e-22!76;CL:0002057!5.68e-19!42;CL:0000839!8.35e-18!70;CL:0000557!2.23e-17!71;CL:0000860!4.72e-17!45;CL:0002194!1.14e-16!63;CL:0000576!1.14e-16!63;CL:0000040!1.14e-16!63;CL:0000559!1.14e-16!63;CL:0002009!8.25e-16!65;CL:0000763!8.67e-16!112;CL:0000049!8.67e-16!112;CL:0000625!7.04e-15!11;CL:0000945!6.22e-12!24;CL:0000826!6.22e-12!24;CL:0000236!2.32e-11!14;CL:0000134!2.14e-10!358;CL:0002320!4.11e-10!365;CL:0000624!6.58e-09!6;CL:0002393!1.90e-08!9;CL:0002397!1.90e-08!9;CL:0000219!2.31e-07!390;CL:0000080!3.28e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.91e-42;18!CL:0000789;3.91e-42;18!CL:0002419;3.91e-42;18!CL:0000084;1.57e-39;25!CL:0000542;3.57e-31;53!CL:0000625;3.74e-26;11!CL:0000945;1.14e-15;24!CL:0000624;2.94e-15;6!CL:0002087;9.09e-14;104!CL:0000236;2.01e-10;13!CL:0000898;1.01e-08;3!CL:0000623;1.51e-07;3!CL:0000738;2.28e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,7.70e-58,52;CL:0000542,1.54e-56,53;CL:0000051,1.54e-56,53;CL:0000791,4.30e-42,18;CL:0000789,4.30e-42,18;CL:0002420,4.30e-42,18;CL:0002419,4.30e-42,18;CL:0000790,4.30e-42,18;CL:0000084,1.04e-39,25;CL:0000827,1.04e-39,25;CL:0002087,7.22e-37,115;CL:0000738,8.13e-36,136;CL:0002031,1.48e-31,120;CL:0000037,2.21e-26,168;CL:0000625,3.23e-26,11;CL:0000988,1.36e-25,177;CL:0002032,3.14e-24,161;CL:0000837,3.14e-24,161;CL:0000945,1.08e-15,24;CL:0000826,1.08e-15,24;CL:0000624,3.75e-15,6;CL:0000236,5.44e-12,14;CL:0000898,8.56e-09,3;CL:0000623,1.85e-07,3;CL:0000825,1.85e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.91e-42;18!CL:0000051;3.57e-31;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.29e-31!102;UBERON:0003061!2.29e-31!102;UBERON:0002193!3.93e-29!112;UBERON:0000178!3.30e-17!15;UBERON:0000179!3.30e-17!15;UBERON:0000463!3.30e-17!15;UBERON:0002371!4.71e-14!80;UBERON:0002405!1.91e-12!115;UBERON:0001474!2.95e-12!86;UBERON:0002384!3.64e-09!375;UBERON:0004765!8.44e-09!101;UBERON:0001434!8.44e-09!101;UBERON:0004177!1.48e-08!7;UBERON:0003081!8.42e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.72e-20;15!UBERON:0000179;2.72e-20;15!UBERON:0000463;2.72e-20;15!UBERON:0002390;1.57e-11;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.13e-20,15;UBERON:0000179,4.13e-20,15;UBERON:0000463,4.13e-20,15;UBERON:0002370,5.79e-10,4;UBERON:0005058,5.79e-10,4;UBERON:0009113,5.79e-10,4;UBERON:0003295,5.79e-10,4;UBERON:0005562,5.79e-10,4;UBERON:0002390,4.47e-09,98;UBERON:0003061,4.47e-09,98;UBERON:0004177,1.84e-08,7;UBERON:0005057,1.84e-08,7;UBERON:0002193,1.08e-07,108 | |||
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|short_description=p7@TRAF3IP3 | |short_description=p7@TRAF3IP3 | ||
}} | }} |
Latest revision as of 21:00, 24 September 2015
Short description: | p7@TRAF3IP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_TRAF3IP3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 5bp_to_ENST00000477431_5end |
EntrezGene: | TRAF3IP3 |
HGNC: | 30766 |
UniProt: | C9JBA0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 7.70e-58 | 52 |
lymphocyte | 1.54e-56 | 53 |
common lymphoid progenitor | 1.54e-56 | 53 |
mature alpha-beta T cell | 4.30e-42 | 18 |
alpha-beta T cell | 4.30e-42 | 18 |
immature T cell | 4.30e-42 | 18 |
mature T cell | 4.30e-42 | 18 |
immature alpha-beta T cell | 4.30e-42 | 18 |
T cell | 1.04e-39 | 25 |
pro-T cell | 1.04e-39 | 25 |
nongranular leukocyte | 7.22e-37 | 115 |
leukocyte | 8.13e-36 | 136 |
hematopoietic lineage restricted progenitor cell | 1.48e-31 | 120 |
hematopoietic stem cell | 2.21e-26 | 168 |
CD8-positive, alpha-beta T cell | 3.23e-26 | 11 |
hematopoietic cell | 1.36e-25 | 177 |
hematopoietic oligopotent progenitor cell | 3.14e-24 | 161 |
hematopoietic multipotent progenitor cell | 3.14e-24 | 161 |
lymphocyte of B lineage | 1.08e-15 | 24 |
pro-B cell | 1.08e-15 | 24 |
CD4-positive, alpha-beta T cell | 3.75e-15 | 6 |
B cell | 5.44e-12 | 14 |
naive T cell | 8.56e-09 | 3 |
natural killer cell | 1.85e-07 | 3 |
pro-NK cell | 1.85e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 4.13e-20 | 15 |
haemolymphatic fluid | 4.13e-20 | 15 |
organism substance | 4.13e-20 | 15 |
thymus | 5.79e-10 | 4 |
hemolymphoid system gland | 5.79e-10 | 4 |
thymic region | 5.79e-10 | 4 |
pharyngeal gland | 5.79e-10 | 4 |
thymus primordium | 5.79e-10 | 4 |
hematopoietic system | 4.47e-09 | 98 |
blood island | 4.47e-09 | 98 |
hemopoietic organ | 1.84e-08 | 7 |
immune organ | 1.84e-08 | 7 |
hemolymphoid system | 1.08e-07 | 108 |