FFCP PHASE1:Hg19::chr11:61129306..61129330,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:61129306..61129330,-
|short_description=p3@CYBASC3
|description=CAGE_peak_3_at_CYBASC3_5end
|association_with_transcript=0bp_to_ENST00000538263,ENST000005...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=220002 | |EntrezGene=220002 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23014 | |HGNC=23014 | ||
|UniProt=F5H240, | |TSSclassifier=strong | ||
|UniProt=F5H240,F5H466 | |||
|association_with_transcript=0bp_to_ENST00000538263,ENST00000540755,ENST00000544118_5end | |||
|cluster_id=chr11:61129306..61129330,- | |||
|description=CAGE_peak_3_at_CYBASC3_5end | |||
|id=chr11:61129306..61129330,- | |||
|ontology_enrichment_celltype=CL:0002371!2.03e-39!591;CL:0000144!9.47e-35!625;CL:0000548!1.06e-31!679;CL:0000004!1.06e-31!679;CL:0000255!1.06e-31!679;CL:0000012!5.35e-31!682;CL:0000063!2.86e-28!578;CL:0000048!6.34e-27!430;CL:0000723!8.16e-27!436;CL:0002320!4.82e-25!365;CL:0000134!7.74e-25!358;CL:0000034!6.84e-24!444;CL:0000219!7.97e-23!390;CL:0000003!1.73e-22!722;CL:0002009!1.22e-20!65;CL:0002194!1.36e-19!63;CL:0000576!1.36e-19!63;CL:0000040!1.36e-19!63;CL:0000559!1.36e-19!63;CL:0000738!4.88e-19!140;CL:0000839!2.21e-18!70;CL:0002087!5.11e-18!119;CL:0000557!6.41e-18!71;CL:0002031!2.97e-17!124;CL:0002057!1.85e-16!42;CL:0000766!3.78e-16!76;CL:0000860!5.28e-16!45;CL:0000988!1.60e-12!182;CL:0000037!2.69e-12!172;CL:0000566!2.69e-12!172;CL:0002032!4.24e-11!165;CL:0000837!4.24e-11!165;CL:0000763!5.87e-10!112;CL:0000049!5.87e-10!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.45e-13;39!CL:0000234;2.45e-13;39!CL:0000860;1.49e-12;33!CL:0002057;1.49e-12;33!CL:0000576;1.59e-10;48!CL:0000766;6.33e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,7.57e-27,427;CL:0000723,9.85e-27,433;CL:0002320,3.83e-25,361;CL:0000134,6.07e-25,354;CL:0000034,9.24e-24,441;CL:0000219,8.36e-23,386;CL:0002009,1.04e-20,61;CL:0000473,4.32e-20,48;CL:0000234,4.32e-20,48;CL:0002194,1.20e-19,59;CL:0000576,1.20e-19,59;CL:0000040,1.20e-19,59;CL:0000559,1.20e-19,59;CL:0000738,7.32e-19,136;CL:0000839,3.31e-18,66;CL:0002087,7.31e-18,115;CL:0000557,7.83e-18,67;CL:0002031,5.55e-17,120;CL:0000860,1.61e-16,42;CL:0002057,1.61e-16,42;CL:0000766,5.03e-16,72;CL:0000988,1.84e-12,177;CL:0000037,3.08e-12,168;CL:0002032,4.89e-11,161;CL:0000837,4.89e-11,161;CL:0000763,7.08e-10,108;CL:0000049,7.08e-10,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.75e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!2.09e-23!375;UBERON:0002371!9.56e-17!80;UBERON:0002193!1.99e-16!112;UBERON:0002204!2.06e-16!167;UBERON:0002390!2.42e-16!102;UBERON:0003061!2.42e-16!102;UBERON:0003081!4.98e-16!216;UBERON:0004765!3.02e-15!101;UBERON:0001434!3.02e-15!101;UBERON:0001474!2.48e-14!86;UBERON:0002405!2.54e-13!115;UBERON:0000926!1.18e-08!448;UBERON:0004120!1.18e-08!448;UBERON:0006603!1.18e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.75e-23,371;UBERON:0002371,1.39e-16,76;UBERON:0003081,3.54e-16,203;UBERON:0002193,3.62e-16,108;UBERON:0002390,4.21e-16,98;UBERON:0003061,4.21e-16,98;UBERON:0002405,6.21e-16,93;UBERON:0000926,1.76e-15,315;UBERON:0004120,1.76e-15,315;UBERON:0006603,1.76e-15,315;UBERON:0002204,2.58e-15,167;UBERON:0004765,5.18e-15,90;UBERON:0001434,2.65e-14,100;UBERON:0001474,4.95e-14,82 | |||
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| ||
|short_description=p3@CYBASC3 | |||
}} | }} |
Latest revision as of 15:48, 18 September 2015
Short description: | p3@CYBASC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CYBASC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000538263, ENST00000540755, ENST00000544118_5end |
EntrezGene: | CYBASC3 |
HGNC: | 23014 |
UniProt: | F5H240F5H466 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 7.57e-27 | 427 |
somatic stem cell | 9.85e-27 | 433 |
connective tissue cell | 3.83e-25 | 361 |
mesenchymal cell | 6.07e-25 | 354 |
stem cell | 9.24e-24 | 441 |
motile cell | 8.36e-23 | 386 |
macrophage dendritic cell progenitor | 1.04e-20 | 61 |
defensive cell | 4.32e-20 | 48 |
phagocyte | 4.32e-20 | 48 |
monopoietic cell | 1.20e-19 | 59 |
monocyte | 1.20e-19 | 59 |
monoblast | 1.20e-19 | 59 |
promonocyte | 1.20e-19 | 59 |
leukocyte | 7.32e-19 | 136 |
myeloid lineage restricted progenitor cell | 3.31e-18 | 66 |
nongranular leukocyte | 7.31e-18 | 115 |
granulocyte monocyte progenitor cell | 7.83e-18 | 67 |
hematopoietic lineage restricted progenitor cell | 5.55e-17 | 120 |
classical monocyte | 1.61e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.61e-16 | 42 |
myeloid leukocyte | 5.03e-16 | 72 |
hematopoietic cell | 1.84e-12 | 177 |
hematopoietic stem cell | 3.08e-12 | 168 |
hematopoietic oligopotent progenitor cell | 4.89e-11 | 161 |
hematopoietic multipotent progenitor cell | 4.89e-11 | 161 |
myeloid cell | 7.08e-10 | 108 |
common myeloid progenitor | 7.08e-10 | 108 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.75e-23 | 371 |
bone marrow | 1.39e-16 | 76 |
lateral plate mesoderm | 3.54e-16 | 203 |
hemolymphoid system | 3.62e-16 | 108 |
hematopoietic system | 4.21e-16 | 98 |
blood island | 4.21e-16 | 98 |
immune system | 6.21e-16 | 93 |
mesoderm | 1.76e-15 | 315 |
mesoderm-derived structure | 1.76e-15 | 315 |
presumptive mesoderm | 1.76e-15 | 315 |
musculoskeletal system | 2.58e-15 | 167 |
skeletal element | 5.18e-15 | 90 |
skeletal system | 2.65e-14 | 100 |
bone element | 4.95e-14 | 82 |