FFCP PHASE1:Hg19::chr16:27732699..27732712,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:27732699..27732712,+ | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_at_chr16:27732699..27732712,+ | |description=CAGE_peak_at_chr16:27732699..27732712,+ | ||
|id=chr16:27732699..27732712,+ | |id=chr16:27732699..27732712,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000243;1.09e-07;15!CL:0000125;1.09e-07;15!CL:0000095;5.66e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,1.09e-07,15;CL:0000125,1.09e-07,15;CL:0000030,1.09e-07,15;CL:0000339,1.09e-07,15;CL:0000095,5.66e-07,17;CL:0000123,5.66e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.80e-38;3!UBERON:0006238;2.30e-11;10!CL:0000339;1.09e-07;15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3093;1.68e-10;11!DOID:5409;2.52e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.68e-10,11;DOID:5409,2.61e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0003075!7.43e-33!86;UBERON:0007284!7.43e-33!86;UBERON:0005743!1.40e-32!86;UBERON:0002346!2.79e-31!90;UBERON:0001049!6.79e-31!57;UBERON:0005068!6.79e-31!57;UBERON:0006241!6.79e-31!57;UBERON:0007135!6.79e-31!57;UBERON:0001017!1.71e-30!82;UBERON:0000073!2.80e-29!94;UBERON:0001016!2.80e-29!94;UBERON:0000955!1.52e-28!69;UBERON:0006238!1.52e-28!69;UBERON:0002298!1.38e-26!8;UBERON:0001896!3.49e-26!3;UBERON:0005290!3.49e-26!3;UBERON:0010096!3.49e-26!3;UBERON:0002616!9.14e-26!59;UBERON:0003056!1.63e-21!61;UBERON:0000033!1.60e-19!123;UBERON:0001905!3.75e-19!2;UBERON:0002757!3.75e-19!2;UBERON:0010134!3.75e-19!2;UBERON:0002784!3.75e-19!2;UBERON:0005408!3.75e-19!2;UBERON:0001899!3.75e-19!2;UBERON:0002780!4.09e-19!41;UBERON:0001890!4.09e-19!41;UBERON:0006240!4.09e-19!41;UBERON:0003080!1.23e-18!42;UBERON:0000153!1.71e-18!129;UBERON:0007811!1.71e-18!129;UBERON:0004121!4.87e-17!169;UBERON:0000924!1.41e-16!173;UBERON:0006601!1.41e-16!173;UBERON:0007023!1.55e-16!115;UBERON:0002021!3.19e-16!5;UBERON:0002308!1.29e-15!9;UBERON:0000125!1.29e-15!9;UBERON:0002020!1.01e-14!34;UBERON:0003528!1.01e-14!34;UBERON:0003076!3.31e-14!15;UBERON:0003057!3.31e-14!15;UBERON:0006331!2.00e-12!3;UBERON:0001894!5.62e-12!7;UBERON:0006222!5.62e-12!7;UBERON:0009663!9.09e-12!7;UBERON:0002791!1.07e-11!33;UBERON:0004733!1.28e-11!12;UBERON:0002028!1.28e-11!12;UBERON:0007277!1.28e-11!12;UBERON:0001893!2.42e-11!34;UBERON:0004732!9.67e-11!13;UBERON:0003296!4.86e-10!4;UBERON:0010133!4.86e-10!4;UBERON:0002038!5.30e-10!1;UBERON:0009661!5.30e-10!1;UBERON:0002902!5.79e-10!1;UBERON:0009899!5.79e-10!1;UBERON:0002022!1.17e-09!1;UBERON:0002420!2.87e-09!9;UBERON:0007245!2.87e-09!9;UBERON:0010009!2.87e-09!9;UBERON:0010011!2.87e-09!9;UBERON:0000454!2.87e-09!9;UBERON:0001869!5.63e-09!32;UBERON:0000025!1.28e-08!194;UBERON:0000966!3.74e-08!5;UBERON:0005388!3.74e-08!5;UBERON:0001802!3.74e-08!5;UBERON:0000483!5.80e-08!309;UBERON:0000119!7.46e-08!312;UBERON:0000970!2.75e-07!20;UBERON:0002104!6.05e-07!21;UBERON:0001950!9.68e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.02e-57;2!UBERON:0002757;2.02e-57;2!UBERON:0010134;2.02e-57;2!UBERON:0005408;2.02e-57;2!UBERON:0001899;2.02e-57;2!UBERON:0003296;2.37e-29;4!UBERON:0010133;2.37e-29;4!UBERON:0002784;2.37e-29;4!UBERON:0000966;1.44e-23;5!UBERON:0005388;1.44e-23;5!UBERON:0001802;1.44e-23;5!UBERON:0001894;2.90e-17;7!UBERON:0000970;2.05e-13;20!UBERON:0002104;8.22e-13;21!UBERON:0000020;9.22e-12;23!UBERON:0001032;2.66e-11;24!UBERON:0004456;2.66e-11;24!UBERON:0000019;6.19e-07;19!UBERON:0000047;6.19e-07;19!UBERON:0004088;6.19e-07;19!UBERON:0010230;6.19e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.02e-57,2;UBERON:0002757,2.02e-57,2;UBERON:0010134,2.02e-57,2;UBERON:0005408,2.02e-57,2;UBERON:0001899,2.02e-57,2;UBERON:0003296,2.37e-29,4;UBERON:0010133,2.37e-29,4;UBERON:0002784,2.37e-29,4;UBERON:0000966,7.84e-20,6;UBERON:0005388,7.84e-20,6;UBERON:0001802,7.84e-20,6;UBERON:0001894,2.90e-17,7;UBERON:0006222,2.90e-17,7;UBERON:0000970,8.05e-13,21;UBERON:0002104,8.05e-13,21;UBERON:0000020,2.61e-11,24;UBERON:0001032,2.61e-11,24;UBERON:0004456,2.61e-11,24;UBERON:0003056,8.15e-08,61;UBERON:0000955,5.48e-07,68;UBERON:0006238,5.48e-07,68 | |||
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|short_description=p@chr16:27732699..27732712,+ | |short_description=p@chr16:27732699..27732712,+ | ||
}} | }} |
Latest revision as of 07:34, 25 July 2015
Short description: | p@chr16:27732699..27732712, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:27732699..27732712, + |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 1.09e-07 | 15 |
glial cell | 1.09e-07 | 15 |
glioblast | 1.09e-07 | 15 |
glioblast (sensu Vertebrata) | 1.09e-07 | 15 |
neuron associated cell | 5.66e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 5.66e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
pineal body | 2.02e-57 | 2 |
regional part of epithalamus | 2.02e-57 | 2 |
secretory circumventricular organ | 2.02e-57 | 2 |
circumventricular organ | 2.02e-57 | 2 |
epithalamus | 2.02e-57 | 2 |
gland of diencephalon | 2.37e-29 | 4 |
neuroendocrine gland | 2.37e-29 | 4 |
regional part of diencephalon | 2.37e-29 | 4 |
retina | 7.84e-20 | 6 |
photoreceptor array | 7.84e-20 | 6 |
posterior segment of eyeball | 7.84e-20 | 6 |
diencephalon | 2.90e-17 | 7 |
future diencephalon | 2.90e-17 | 7 |
eye | 8.05e-13 | 21 |
visual system | 8.05e-13 | 21 |
sense organ | 2.61e-11 | 24 |
sensory system | 2.61e-11 | 24 |
entire sense organ system | 2.61e-11 | 24 |
pre-chordal neural plate | 8.15e-08 | 61 |
brain | 5.48e-07 | 68 |
future brain | 5.48e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.68e-10 | 11 |
lung small cell carcinoma | 2.61e-08 | 4 |