FFCP PHASE1:Hg19::chr17:46622070..46622109,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3212 | |EntrezGene=3212 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=5113 | |HGNC=5113 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-54bp_to_ENST00000326226_5end | |association_with_transcript=-54bp_to_ENST00000326226_5end | ||
|cluster_id=chr17:46622070..46622109,- | |||
|description=CAGE_peak_1_at_HOXB2_5end | |description=CAGE_peak_1_at_HOXB2_5end | ||
|id=chr17:46622070..46622109,- | |id=chr17:46622070..46622109,- | ||
|ontology_enrichment_celltype=CL:0000222!8.07e-18!119;CL:0000183!4.11e-16!59;CL:0000680!1.01e-15!57;CL:0000056!1.01e-15!57;CL:0000355!1.01e-15!57;CL:0000187!8.33e-15!54;CL:0000055!9.55e-15!180;CL:0000192!2.15e-13!42;CL:0000514!2.15e-13!42;CL:0000393!7.84e-12!60;CL:0000211!7.84e-12!60;CL:1000497!5.36e-10!18;CL:0002518!5.36e-10!18;CL:0000359!5.37e-10!32;CL:1000449!4.02e-09!16;CL:1000507!1.33e-07!12;CL:1000494!1.33e-07!12;CL:0002681!1.98e-07!13;CL:0002584!1.98e-07!13;CL:0002539!3.98e-07!10 | |ontology_enrichment_celltype=CL:0000222!8.07e-18!119;CL:0000183!4.11e-16!59;CL:0000680!1.01e-15!57;CL:0000056!1.01e-15!57;CL:0000355!1.01e-15!57;CL:0000187!8.33e-15!54;CL:0000055!9.55e-15!180;CL:0000192!2.15e-13!42;CL:0000514!2.15e-13!42;CL:0000393!7.84e-12!60;CL:0000211!7.84e-12!60;CL:1000497!5.36e-10!18;CL:0002518!5.36e-10!18;CL:0000359!5.37e-10!32;CL:1000449!4.02e-09!16;CL:1000507!1.33e-07!12;CL:1000494!1.33e-07!12;CL:0002681!1.98e-07!13;CL:0002584!1.98e-07!13;CL:0002539!3.98e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000192;5.83e-11;43!CL:1000497;1.70e-10;17!CL:0002518;1.70e-10;17!CL:0000359;3.49e-10;32!CL:1000449;1.61e-09;15!CL:0000187;2.40e-09;55!CL:0002681;1.13e-07;12!CL:0002584;1.13e-07;12!CL:0002539;1.40e-07;10!CL:1000507;1.95e-07;10!CL:1000494;1.95e-07;10!CL:0002334;7.20e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.17e-19,121;CL:0000680,4.19e-17,58;CL:0000056,4.19e-17,58;CL:0000355,4.19e-17,58;CL:0000187,4.10e-16,55;CL:0000192,1.94e-14,43;CL:0000514,1.94e-14,43;CL:0000393,2.35e-12,61;CL:0000211,2.35e-12,61;CL:0000359,1.62e-10,32;CL:1000497,1.76e-10,17;CL:0002518,1.76e-10,17;CL:1000449,1.54e-09,15;CL:0002681,1.05e-07,12;CL:0002584,1.05e-07,12;CL:0002539,1.41e-07,10;CL:1000507,1.79e-07,10;CL:1000494,1.79e-07,10;CL:0002334,8.35e-07,12;CL:0002321,9.36e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;5.83e-11;43!CL:0000355;1.57e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!1.30e-16!70;UBERON:0005256!1.71e-15!143;UBERON:0002100!2.63e-15!216;UBERON:0001134!2.74e-14!61;UBERON:0002036!2.74e-14!61;UBERON:0003082!2.74e-14!61;UBERON:0002385!9.18e-14!63;UBERON:0001015!9.18e-14!63;UBERON:0000383!9.18e-14!63;UBERON:0003914!2.70e-13!118;UBERON:0000486!6.87e-13!82;UBERON:0000914!8.95e-12!83;UBERON:0002329!8.95e-12!83;UBERON:0003077!8.95e-12!83;UBERON:0003059!8.95e-12!83;UBERON:0007282!8.95e-12!83;UBERON:0009618!8.95e-12!83;UBERON:0007285!8.95e-12!83;UBERON:0002113!1.88e-11!27;UBERON:0003918!1.88e-11!27;UBERON:0005095!1.88e-11!27;UBERON:0007687!1.88e-11!27;UBERON:0000489!1.90e-11!32;UBERON:0001637!1.31e-10!42;UBERON:0003509!1.31e-10!42;UBERON:0004572!1.31e-10!42;UBERON:0000080!3.27e-10!18;UBERON:0002120!3.27e-10!18;UBERON:0004875!3.27e-10!18;UBERON:0005721!3.27e-10!18;UBERON:0005754!3.27e-10!18;UBERON:0007297!3.27e-10!18;UBERON:0003104!5.90e-10!238;UBERON:0009142!5.90e-10!238;UBERON:0001981!1.04e-09!60;UBERON:0007500!1.04e-09!60;UBERON:0004537!1.04e-09!60;UBERON:0006965!1.04e-09!60;UBERON:0006555!1.17e-09!17;UBERON:0005103!1.17e-09!17;UBERON:0000083!1.17e-09!17;UBERON:0009201!1.17e-09!17;UBERON:0004819!1.17e-09!17;UBERON:0006553!1.17e-09!17;UBERON:0003074!1.17e-09!17;UBERON:0003060!1.17e-09!17;UBERON:0004876!1.41e-09!20;UBERON:0009569!1.59e-09!113;UBERON:0004573!2.69e-09!33;UBERON:0004571!2.69e-09!33;UBERON:0004872!2.78e-09!84;UBERON:0000055!3.58e-09!69;UBERON:0004211!4.02e-09!16;UBERON:0001285!4.02e-09!16;UBERON:0007684!4.02e-09!16;UBERON:0003220!4.02e-09!16;UBERON:0004208!4.02e-09!16;UBERON:0003887!4.55e-09!21;UBERON:0002417!8.91e-09!61;UBERON:0000916!8.91e-09!61;UBERON:0000058!2.07e-08!26;UBERON:0000353!3.00e-08!17;UBERON:0003103!3.35e-08!69;UBERON:0002049!8.12e-08!79;UBERON:0007798!8.12e-08!79;UBERON:0005172!1.26e-07!55;UBERON:0005173!1.26e-07!55;UBERON:0009773!1.33e-07!12;UBERON:0001231!1.33e-07!12;UBERON:0004810!1.33e-07!12;UBERON:0001225!1.98e-07!13;UBERON:0008987!1.98e-07!13;UBERON:0001135!2.56e-07!15;UBERON:0000947!3.09e-07!21;UBERON:0010191!3.09e-07!21;UBERON:0004237!3.98e-07!10;UBERON:0004695!3.98e-07!10;UBERON:0002111!3.98e-07!10;UBERON:0004178!3.98e-07!10;UBERON:0001008!4.83e-07!45;UBERON:0000490!5.40e-07!138;UBERON:0006554!8.07e-07!44 | |ontology_enrichment_uberon=UBERON:0004290!1.30e-16!70;UBERON:0005256!1.71e-15!143;UBERON:0002100!2.63e-15!216;UBERON:0001134!2.74e-14!61;UBERON:0002036!2.74e-14!61;UBERON:0003082!2.74e-14!61;UBERON:0002385!9.18e-14!63;UBERON:0001015!9.18e-14!63;UBERON:0000383!9.18e-14!63;UBERON:0003914!2.70e-13!118;UBERON:0000486!6.87e-13!82;UBERON:0000914!8.95e-12!83;UBERON:0002329!8.95e-12!83;UBERON:0003077!8.95e-12!83;UBERON:0003059!8.95e-12!83;UBERON:0007282!8.95e-12!83;UBERON:0009618!8.95e-12!83;UBERON:0007285!8.95e-12!83;UBERON:0002113!1.88e-11!27;UBERON:0003918!1.88e-11!27;UBERON:0005095!1.88e-11!27;UBERON:0007687!1.88e-11!27;UBERON:0000489!1.90e-11!32;UBERON:0001637!1.31e-10!42;UBERON:0003509!1.31e-10!42;UBERON:0004572!1.31e-10!42;UBERON:0000080!3.27e-10!18;UBERON:0002120!3.27e-10!18;UBERON:0004875!3.27e-10!18;UBERON:0005721!3.27e-10!18;UBERON:0005754!3.27e-10!18;UBERON:0007297!3.27e-10!18;UBERON:0003104!5.90e-10!238;UBERON:0009142!5.90e-10!238;UBERON:0001981!1.04e-09!60;UBERON:0007500!1.04e-09!60;UBERON:0004537!1.04e-09!60;UBERON:0006965!1.04e-09!60;UBERON:0006555!1.17e-09!17;UBERON:0005103!1.17e-09!17;UBERON:0000083!1.17e-09!17;UBERON:0009201!1.17e-09!17;UBERON:0004819!1.17e-09!17;UBERON:0006553!1.17e-09!17;UBERON:0003074!1.17e-09!17;UBERON:0003060!1.17e-09!17;UBERON:0004876!1.41e-09!20;UBERON:0009569!1.59e-09!113;UBERON:0004573!2.69e-09!33;UBERON:0004571!2.69e-09!33;UBERON:0004872!2.78e-09!84;UBERON:0000055!3.58e-09!69;UBERON:0004211!4.02e-09!16;UBERON:0001285!4.02e-09!16;UBERON:0007684!4.02e-09!16;UBERON:0003220!4.02e-09!16;UBERON:0004208!4.02e-09!16;UBERON:0003887!4.55e-09!21;UBERON:0002417!8.91e-09!61;UBERON:0000916!8.91e-09!61;UBERON:0000058!2.07e-08!26;UBERON:0000353!3.00e-08!17;UBERON:0003103!3.35e-08!69;UBERON:0002049!8.12e-08!79;UBERON:0007798!8.12e-08!79;UBERON:0005172!1.26e-07!55;UBERON:0005173!1.26e-07!55;UBERON:0009773!1.33e-07!12;UBERON:0001231!1.33e-07!12;UBERON:0004810!1.33e-07!12;UBERON:0001225!1.98e-07!13;UBERON:0008987!1.98e-07!13;UBERON:0001135!2.56e-07!15;UBERON:0000947!3.09e-07!21;UBERON:0010191!3.09e-07!21;UBERON:0004237!3.98e-07!10;UBERON:0004695!3.98e-07!10;UBERON:0002111!3.98e-07!10;UBERON:0004178!3.98e-07!10;UBERON:0001008!4.83e-07!45;UBERON:0000490!5.40e-07!138;UBERON:0006554!8.07e-07!44 | ||
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|phase1_expression=5.99538651592837,6.42301571672949,3.38290569830331,4.00293193412522,2.68176656656373,3.48935409640147,17.7309914717817,3.15859936713415,5.74608382039645,15.2355040630935,4.88460817580699,3.27662058195258,5.80287352102598,5.5694858832021,3.64537113300707,12.7741777825837,15.0673632005994,15.3365118981348,15.1259167625057,11.0808952269109,23.0520781106006,22.5687399464223,2.0036519099174,3.69560947696787,2.13422487311165,1.83392173795083,1.31360943119913,1.81034797021462,0,0,0.464448369948228,0,0,0,0,0,7.04641054403633,0,0.200544447470142,0,0.223915474239924,0,0,0.290796477559129,0.377875943688809,0,0,0,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0.329851300186716,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0.22465726229299,0,0,0.285012743741249,0.19891667719909,0.182664153764634,0,0,0,0,0,0.574752439954483,0,0,0,0,0,7.93027971474155,5.04457706683382,2.63384084775077,1.7703879310245,1.17903228824749,0.411202997999018,1.67186495390678,0.651844533267181,1.89379122293893,0,1.44833593950726,1.17842362989935,1.55073726208535,1.89562704635511,1.5370958367081,2.21100890851793,2.13769275984779,1.93445012450094,1.44901542867526,1.03800594213442,0.802622484269139,3.1360657141493,1.81294948316106,1.53288197440768,3.09264700934367,1.26509846009751,1.59282707162048,0,0,1.35517607169996,0.76791966692651,1.24930726552346,1.4206635122641,0,0.201606743224732,0.802320587350522,0.724122019413995,0,4.02420515822182,2.42938867502708,0.722878304769133,0,0.289693037921647,0,0.973269740605272,0.283604451492204,0,0.087834785693126,1.83370705696798,0,0,0,0.174129737299267,0,1.90792499444274,1.14398982156026,2.22874500797739,1.59009925893364,3.4409383804245,2.08284300964557,1.13061588384802,2.93649605346934,5.77747888074142,2.92592953151535,1.29208379584664,0.71153252537342,2.00832367658802,0,0,0,2.94130464276695,7.29127753093584,3.92918804449951,4.4905874525234,3.71617885594963,1.53316637465883,1.89853131913626,1.64881569537367,0,0,0.872188104285069,4.96971951695318,3.67228483827281,4.8991396900891,2.29469296599051,8.51204117276057,0.560677600142307,2.1349799145941,0,0.933633106199299,1.0776853765575,1.30769522490767,0,0,0.70296429550139,0.312160076830321,1.71141546463335,6.72519062483105,14.4444433331831,9.87424960645602,9.83155646915739,0,0,0,0,0,21.8438726865126,51.7405062107692,0,0,0,0,0,0,3.97012641060074,2.87023417102179,4.05759038755278,4.02670612203168,5.40163972951924,6.28620428354477,2.06112432036503,4.28068769562657,3.54430297706659,6.04109431999431,3.5340728394176,5.98324341174946,0,1.77504796258307,7.7579115635283,1.52604533079439,0.193260853163297,0.545492241181669,0,0.121973706129595,0.132529768321485,2.09149097165133,3.52447587052259,0.756962552626885,0,4.69348596989448,8.36213219650751,11.0507937081984,6.96551892047969,7.21879481669586,0.591534000199219,1.68584690078102,0.482022059766964,1.65440959098591,1.08939722046203,1.66089433377768,0.539325232640658,0.588664395376038,0.38474715694639,6.64339909162183,16.8290128564135,16.0513864419246,20.5812195939759,0,0,1.77236972004421,0,0,0.343135620597051,0,0,0.502644862058154,0.0925884451585296,1.95484983186195,4.15973914111831,2.88662684050547,1.04337364477569,0,0.144366447761074,0.462985512576611,0.380508304469197,0,0,0,0,0.148631162288728,4.68669169933885,0.335964256397719,0.283550194484773,2.32852159027406,1.16253575405585,3.06706143332169,6.40462209264727,12.7670229319178,3.31724984865235,2.88239906833923,4.92345490362882,1.07946420296687,2.29193055334967,1.17217447210047,3.4214489204541,2.77634230298973,2.40274446275134,0,0,0,0.1466765716419,6.33431407213111,35.7656445851882,9.298330278116,1.59562869950922,0,1.54324424557285,4.25547396069835,2.1313774321288,9.86548156241218,8.68194568626309,8.23240336780769,8.14340460734338,8.17401482107855,10.2953743481346,16.2777263612176,10.4584015032035,22.6938689983269,0,0,0,0,0,11.4109524032575,6.22559618670591,4.72595541865882,7.34149949283572,0.672510863961164,0.197030760201927,0.862510299438069,0.898401253958239,0,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,4.2942022101699,14.5049451107306,10.0368058768902,0,0,0,0,1.20378439891088,2.27407504055985,2.0694614258501,3.32112799267718,2.94990669666725,1.73767228936166,2.93701736194111,0.686286847621712,0.413536052245775,0.647142602455851,0.213455115606889,1.21251028578504,4.99306318531491,3.93107381328584,6.20269519546942,4.14347327877769,7.01650236082684,6.02254001501795,3.58195074346692,12.8683136914886,5.93672265779964,19.4304214191346,12.606882497232,17.7394656989828,27.0012303175483,17.199136012074,0,2.00506470303285,0.920809889358963,1.49258782613989,3.64182336013434,2.88473712910733,13.5359883872224,5.93018095703994,18.0400446910677,17.5367069583913,10.5551628892876,10.2360045663807,8.50468526382578,6.0456456508599,21.5918153766405,16.527732690175,28.5963171097266,18.3510916592428,19.9458242142894,8.73111543416495,3.06963827304308,2.61435451024901,0,0.328014645699706,0,2.7821073144885,5.036320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| ||
|short_description=p1@HOXB2 | |short_description=p1@HOXB2 | ||
}} | }} |
Latest revision as of 06:40, 25 September 2015
Short description: | p1@HOXB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXB2_5end |
Coexpression cluster: | NA |
Association with transcript: | -54bp_to_ENST00000326226_5end |
EntrezGene: | HOXB2 |
HGNC: | 5113 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.17e-19 | 121 |
muscle precursor cell | 4.19e-17 | 58 |
myoblast | 4.19e-17 | 58 |
multi-potent skeletal muscle stem cell | 4.19e-17 | 58 |
muscle cell | 4.10e-16 | 55 |
smooth muscle cell | 1.94e-14 | 43 |
smooth muscle myoblast | 1.94e-14 | 43 |
electrically responsive cell | 2.35e-12 | 61 |
electrically active cell | 2.35e-12 | 61 |
vascular associated smooth muscle cell | 1.62e-10 | 32 |
kidney cell | 1.76e-10 | 17 |
kidney epithelial cell | 1.76e-10 | 17 |
epithelial cell of nephron | 1.54e-09 | 15 |
kidney cortical cell | 1.05e-07 | 12 |
renal cortical epithelial cell | 1.05e-07 | 12 |
aortic smooth muscle cell | 1.41e-07 | 10 |
kidney tubule cell | 1.79e-07 | 10 |
nephron tubule epithelial cell | 1.79e-07 | 10 |
preadipocyte | 8.35e-07 | 12 |
embryonic cell | 9.36e-07 | 250 |