FFCP PHASE1:Hg19::chr17:4871099..4871130,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9552 | |EntrezGene=9552 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11216 | |HGNC=11216 | ||
|TSSclassifier=strong | |||
|UniProt=O75391 | |UniProt=O75391 | ||
|association_with_transcript=1bp_to_ENST00000206020,NM_004890,uc002gae.2,uc002gaf.2_5end | |association_with_transcript=1bp_to_ENST00000206020,NM_004890,uc002gae.2,uc002gaf.2_5end | ||
|cluster_id=chr17:4871099..4871130,- | |||
|description=CAGE_peak_1_at_SPAG7_5end | |description=CAGE_peak_1_at_SPAG7_5end | ||
|id=chr17:4871099..4871130,- | |id=chr17:4871099..4871130,- | ||
|ontology_enrichment_celltype=CL:1000449!3.40e-08!16;CL:0002057!6.06e-08!42;CL:0002681!2.17e-07!13;CL:0002584!2.17e-07!13;CL:0000860!6.02e-07!45;CL:0000183!6.69e-07!59;CL:0000222!9.50e-07!119 | |ontology_enrichment_celltype=CL:1000449!3.40e-08!16;CL:0002057!6.06e-08!42;CL:0002681!2.17e-07!13;CL:0002584!2.17e-07!13;CL:0000860!6.02e-07!45;CL:0000183!6.69e-07!59;CL:0000222!9.50e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.42e-09;33!CL:0002057;1.42e-09;33!CL:0000473;5.71e-08;39!CL:0000234;5.71e-08;39!CL:1000449;8.77e-08;15!CL:0002681;5.81e-07;12!CL:0002584;5.81e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.54e-08,48;CL:0000234,4.54e-08,48;CL:0000860,6.06e-08,42;CL:0002057,6.06e-08,42;CL:1000449,8.74e-08,15;CL:0000222,2.98e-07,121;CL:0002681,5.55e-07,12;CL:0002584,5.55e-07,12;CL:0000393,6.38e-07,61;CL:0000211,6.38e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0006555;8.77e-08;15!UBERON:0004819;8.77e-08;15!UBERON:0001285;8.77e-08;15!UBERON:0007684;8.77e-08;15!UBERON:0000353;2.57e-07;15!UBERON:0001225;5.81e-07;12!UBERON:0008987;5.81e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,1.22e-11,592;UBERON:0005423,4.30e-10,581;UBERON:0003914,2.04e-09,117;UBERON:0002050,1.02e-08,564;UBERON:0007503,1.60e-08,78;UBERON:0000119,1.80e-08,309;UBERON:0003081,2.31e-08,203;UBERON:0000923,2.34e-08,560;UBERON:0010316,2.34e-08,560;UBERON:0005291,2.34e-08,560;UBERON:0006598,2.34e-08,560;UBERON:0010317,2.34e-08,560;UBERON:0002532,2.34e-08,560;UBERON:0000483,4.52e-08,306;UBERON:0002049,7.09e-08,78;UBERON:0007798,7.09e-08,78;UBERON:0003103,8.20e-08,68;UBERON:0004211,8.74e-08,15;UBERON:0009773,8.74e-08,15;UBERON:0001231,8.74e-08,15;UBERON:0001285,8.74e-08,15;UBERON:0007684,8.74e-08,15;UBERON:0004208,8.74e-08,15;UBERON:0006555,1.02e-07,16;UBERON:0004819,1.02e-07,16;UBERON:0002204,1.75e-07,167;UBERON:0000353,2.46e-07,15;UBERON:0000025,4.00e-07,192;UBERON:0003104,5.20e-07,160;UBERON:0009142,5.20e-07,160;UBERON:0001225,5.55e-07,12;UBERON:0008987,5.55e-07,12 | |||
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| ||
|short_description=p1@SPAG7 | |short_description=p1@SPAG7 | ||
}} | }} |
Latest revision as of 03:20, 16 September 2015
Short description: | p1@SPAG7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPAG7_5end |
Coexpression cluster: | NA |
Association with transcript: | 1bp_to_ENST00000206020, NM_004890, uc002gae.2, uc002gaf.2_5end |
EntrezGene: | SPAG7 |
HGNC: | 11216 |
UniProt: | O75391 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.54e-08 | 48 |
phagocyte | 4.54e-08 | 48 |
classical monocyte | 6.06e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.06e-08 | 42 |
epithelial cell of nephron | 8.74e-08 | 15 |
mesodermal cell | 2.98e-07 | 121 |
kidney cortical cell | 5.55e-07 | 12 |
renal cortical epithelial cell | 5.55e-07 | 12 |
electrically responsive cell | 6.38e-07 | 61 |
electrically active cell | 6.38e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
embryo | 1.22e-11 | 592 |
developing anatomical structure | 4.30e-10 | 581 |
epithelial tube | 2.04e-09 | 117 |
embryonic structure | 1.02e-08 | 564 |
epithelial vesicle | 1.60e-08 | 78 |
cell layer | 1.80e-08 | 309 |
lateral plate mesoderm | 2.31e-08 | 203 |
germ layer | 2.34e-08 | 560 |
germ layer / neural crest | 2.34e-08 | 560 |
embryonic tissue | 2.34e-08 | 560 |
presumptive structure | 2.34e-08 | 560 |
germ layer / neural crest derived structure | 2.34e-08 | 560 |
epiblast (generic) | 2.34e-08 | 560 |
epithelium | 4.52e-08 | 306 |
vasculature | 7.09e-08 | 78 |
vascular system | 7.09e-08 | 78 |
compound organ | 8.20e-08 | 68 |
nephron epithelium | 8.74e-08 | 15 |
renal tubule | 8.74e-08 | 15 |
nephron tubule | 8.74e-08 | 15 |
nephron | 8.74e-08 | 15 |
uriniferous tubule | 8.74e-08 | 15 |
nephrogenic mesenchyme | 8.74e-08 | 15 |
excretory tube | 1.02e-07 | 16 |
kidney epithelium | 1.02e-07 | 16 |
musculoskeletal system | 1.75e-07 | 167 |
parenchyma | 2.46e-07 | 15 |
tube | 4.00e-07 | 192 |
mesenchyme | 5.20e-07 | 160 |
entire embryonic mesenchyme | 5.20e-07 | 160 |
cortex of kidney | 5.55e-07 | 12 |
renal parenchyma | 5.55e-07 | 12 |