FFCP PHASE1:Hg19::chr17:4958402..4958409,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:4958402..4958409,- | |||
|description=CAGE_peak_at_chr17:4958402..4958409,- | |description=CAGE_peak_at_chr17:4958402..4958409,- | ||
|id=chr17:4958402..4958409,- | |id=chr17:4958402..4958409,- | ||
|ontology_enrichment_celltype=CL:0000039!2.93e-23!7;CL:0000586!2.93e-23!7 | |ontology_enrichment_celltype=CL:0000039!2.93e-23!7;CL:0000586!2.93e-23!7 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.04e-09;7!CL:0000586;1.04e-09;7!CL:0000047;7.21e-09;2!CL:0002251;2.19e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.09e-09,7;CL:0000586,1.09e-09,7;CL:0002251,2.21e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0005425;4.72e-17;1!UBERON:0009117;4.66e-07;10!UBERON:0005564;4.66e-07;10 | |||
|ontology_enrichment_disease=DOID:1749!2.06e-25!14;DOID:0050687!9.00e-13!143;DOID:305!1.18e-12!106;DOID:3095!5.63e-12!22;DOID:2994!5.63e-12!22;DOID:74!1.49e-09!2;DOID:162!6.00e-08!235;DOID:14566!1.16e-07!239 | |ontology_enrichment_disease=DOID:1749!2.06e-25!14;DOID:0050687!9.00e-13!143;DOID:305!1.18e-12!106;DOID:3095!5.63e-12!22;DOID:2994!5.63e-12!22;DOID:74!1.49e-09!2;DOID:162!6.00e-08!235;DOID:14566!1.16e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.80e-27;14!DOID:3151;2.08e-16;1!DOID:3149;2.08e-16;1!DOID:3451;7.21e-09;2!DOID:4159;7.21e-09;2!DOID:0060122;7.21e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.59e-27,14;DOID:3151,1.65e-16,1;DOID:3149,1.65e-16,1;DOID:305,7.43e-11,106;DOID:3451,6.42e-09,2;DOID:4159,6.42e-09,2;DOID:0060122,6.42e-09,2;DOID:0050687,8.04e-08,143;DOID:162,9.28e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000473!4.79e-20!8;UBERON:0003343!6.64e-19!4;UBERON:0004785!6.64e-19!4;UBERON:0003729!3.77e-15!5;UBERON:0004176!4.97e-15!22;UBERON:0003135!2.04e-14!11;UBERON:0000991!1.73e-12!21;UBERON:0009196!1.73e-12!21;UBERON:0009117!1.73e-12!21;UBERON:0005564!1.73e-12!21;UBERON:0000344!2.18e-09!12;UBERON:0003133!3.61e-09!48;UBERON:0003101!3.66e-09!22;UBERON:0000079!3.66e-09!22;UBERON:0004458!6.13e-09!49;UBERON:0005156!1.84e-08!59;UBERON:0000990!1.84e-08!59;UBERON:0002323!6.35e-08!46;UBERON:0000974!1.33e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;4.72e-17;1!UBERON:0001785;4.72e-17;1!UBERON:0002464;4.72e-17;1!UBERON:0004904;4.72e-17;1!UBERON:0001021;4.72e-17;1!UBERON:0003343;4.87e-16;4!UBERON:0004785;4.87e-16;4!UBERON:0000974;5.09e-11;6!UBERON:0003714;3.43e-09;2!UBERON:0005162;3.43e-09;2!UBERON:0000122;3.43e-09;2!UBERON:0006562;7.21e-09;2!UBERON:0000473;1.31e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,4.72e-17,1;UBERON:0001785,4.72e-17,1;UBERON:0002464,4.72e-17,1;UBERON:0004904,4.72e-17,1;UBERON:0001021,4.72e-17,1;UBERON:0003902,4.72e-17,1;UBERON:0005425,4.72e-17,1;UBERON:0003343,6.13e-16,4;UBERON:0004785,6.13e-16,4;UBERON:0003714,3.43e-09,2;UBERON:0005162,3.43e-09,2;UBERON:0000122,3.43e-09,2;UBERON:0000473,1.37e-08,8;UBERON:0000974,6.31e-07,10 | |||
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| ||
|short_description=p@chr17:4958402..4958409,- | |short_description=p@chr17:4958402..4958409,- | ||
}} | }} |
Latest revision as of 18:55, 25 July 2015
Short description: | p@chr17:4958402..4958409, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:4958402..4958409, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.09e-09 | 7 |
germ cell | 1.09e-09 | 7 |
epithelial cell of alimentary canal | 2.21e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 4.72e-17 | 1 |
cranial nerve | 4.72e-17 | 1 |
nerve trunk | 4.72e-17 | 1 |
nerve connecting eye with brain | 4.72e-17 | 1 |
nerve | 4.72e-17 | 1 |
retinal neural layer | 4.72e-17 | 1 |
presumptive neural retina | 4.72e-17 | 1 |
mucosa of oral region | 6.13e-16 | 4 |
respiratory system mucosa | 6.13e-16 | 4 |
neural tissue | 3.43e-09 | 2 |
multi cell component structure | 3.43e-09 | 2 |
neuron projection bundle | 3.43e-09 | 2 |
testis | 1.37e-08 | 8 |
neck | 6.31e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.59e-27 | 14 |
skin squamous cell carcinoma | 1.65e-16 | 1 |
keratoacanthoma | 1.65e-16 | 1 |
carcinoma | 7.43e-11 | 106 |
skin carcinoma | 6.42e-09 | 2 |
skin cancer | 6.42e-09 | 2 |
integumentary system cancer | 6.42e-09 | 2 |
cell type cancer | 8.04e-08 | 143 |
cancer | 9.28e-07 | 235 |