FFCP PHASE1:Hg19::chr12:100867653..100867677,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:100867653..100867677,+
|short_description=p2@NR1H4
|description=CAGE_peak_2_at_NR1H4_5end
|association_with_transcript=-1bp_to_uc001thp.1,uc001thq.1,uc001...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9971 | |EntrezGene=9971 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7967 | |HGNC=7967 | ||
|TSSclassifier=strong | |||
|UniProt=Q96RI1 | |UniProt=Q96RI1 | ||
|association_with_transcript=-1bp_to_uc001thp.1,uc001thq.1,uc001thr.1,uc010svj.1,uc010svk.1_5end | |||
|cluster_id=chr12:100867653..100867677,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_NR1H4_5end | |||
|id=chr12:100867653..100867677,+ | |||
|ontology_enrichment_celltype=CL:0000181!3.79e-12!12;CL:0000417!3.79e-12!12;CL:0000668!3.79e-12!12;CL:0000414!3.79e-12!12;CL:0000412!3.79e-12!12;CL:0000182!3.79e-12!12;CL:0002622!1.61e-07!3;CL:0000746!1.80e-07!3;CL:0000513!1.80e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.21e-26;12!CL:0002195;5.08e-11;2!CL:0002571;5.08e-11;2!CL:0000746;2.88e-07;3!CL:0002622;3.32e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.92e-26,12;CL:0002195,5.21e-11,2;CL:0002571,5.21e-11,2;CL:0002622,3.21e-07,3;CL:0000746,3.42e-07,3;CL:0000513,3.42e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.14e-28;11!UBERON:0009497;1.65e-23;13!UBERON:0003104;9.01e-17;31!UBERON:0001041;1.68e-09;30!CL:0000513;2.88e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003929!4.85e-21!54;UBERON:0009854!5.18e-20!23;UBERON:0004921!5.26e-20!129;UBERON:0004185!5.26e-20!129;UBERON:0002107!3.40e-19!19;UBERON:0006925!3.40e-19!19;UBERON:0008836!3.40e-19!19;UBERON:0005057!3.73e-19!26;UBERON:0005172!4.93e-19!55;UBERON:0005173!4.93e-19!55;UBERON:0008835!1.58e-18!22;UBERON:0003894!1.58e-18!22;UBERON:0009497!2.51e-18!25;UBERON:0000015!2.51e-18!25;UBERON:0002423!2.51e-18!25;UBERON:0006235!2.51e-18!25;UBERON:0004161!2.51e-18!25;UBERON:0009856!3.41e-17!26;UBERON:0002368!4.15e-17!35;UBERON:0001007!1.29e-16!155;UBERON:0001555!1.29e-16!155;UBERON:0007026!1.29e-16!155;UBERON:0002417!1.95e-16!61;UBERON:0000916!1.95e-16!61;UBERON:0005911!4.72e-16!82;UBERON:0007499!8.12e-16!25;UBERON:0002530!8.68e-16!59;UBERON:0000481!1.93e-14!347;UBERON:0004119!3.10e-14!169;UBERON:0000925!3.10e-14!169;UBERON:0006595!3.10e-14!169;UBERON:0000949!1.46e-13!45;UBERON:0000077!1.65e-12!130;UBERON:0005177!3.25e-12!107;UBERON:0003104!2.93e-11!238;UBERON:0009142!2.93e-11!238;UBERON:0002365!2.35e-10!31;UBERON:0002330!2.35e-10!31;UBERON:0009569!2.39e-10!113;UBERON:0000477!3.10e-09!286;UBERON:0000490!3.14e-09!138;UBERON:0000475!4.47e-09!365;UBERON:0002100!5.45e-09!216;UBERON:0001041!8.20e-09!98;UBERON:0000488!4.57e-08!4;UBERON:0005256!4.83e-08!143;UBERON:0000483!1.17e-07!309;UBERON:0001048!1.26e-07!168;UBERON:0000119!1.85e-07!312;UBERON:0001046!2.09e-07!19;UBERON:0000062!2.46e-07!511;UBERON:0004111!2.75e-07!241;UBERON:0006554!3.68e-07!44;UBERON:0001008!6.31e-07!45;UBERON:0000160!6.82e-07!27;UBERON:0005409!7.78e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;4.89e-42;19!UBERON:0006925;4.89e-42;19!UBERON:0002423;2.74e-36;25!UBERON:0002368;3.95e-32;33!UBERON:0002365;1.25e-23;31!UBERON:0002330;1.25e-23;31!UBERON:0005172;4.11e-19;52!UBERON:0005173;4.11e-19;52!UBERON:0000949;2.06e-18;43!UBERON:0002530;1.26e-16;57!UBERON:0002417;1.37e-12;58!UBERON:0000916;1.37e-12;58!UBERON:0000007;2.66e-10;2!UBERON:0002108;4.56e-09;4!UBERON:0001007;1.73e-08;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,4.36e-42,19;UBERON:0006925,4.36e-42,19;UBERON:0008836,4.36e-42,19;UBERON:0009497,2.53e-36,25;UBERON:0000015,2.53e-36,25;UBERON:0002423,2.53e-36,25;UBERON:0006235,2.53e-36,25;UBERON:0004161,2.53e-36,25;UBERON:0008835,5.91e-36,22;UBERON:0003894,5.91e-36,22;UBERON:0009854,2.89e-34,23;UBERON:0002368,1.72e-32,35;UBERON:0007499,2.71e-31,25;UBERON:0009856,5.59e-30,26;UBERON:0005172,1.69e-25,54;UBERON:0005173,1.69e-25,54;UBERON:0002530,1.74e-25,59;UBERON:0002365,1.12e-24,31;UBERON:0002330,1.12e-24,31;UBERON:0000949,1.89e-24,45;UBERON:0003929,1.43e-22,54;UBERON:0002417,1.58e-22,60;UBERON:0000916,1.58e-22,60;UBERON:0005911,2.13e-15,82;UBERON:0004921,7.42e-15,118;UBERON:0005177,2.82e-13,101;UBERON:0003104,2.84e-13,160;UBERON:0009142,2.84e-13,160;UBERON:0005256,8.75e-13,122;UBERON:0001007,1.84e-12,145;UBERON:0001555,1.84e-12,145;UBERON:0007026,1.84e-12,145;UBERON:0009569,1.50e-11,112;UBERON:0004119,8.07e-11,160;UBERON:0000925,8.07e-11,160;UBERON:0006595,8.07e-11,160;UBERON:0000007,3.62e-10,2;UBERON:0000490,9.87e-10,148;UBERON:0002100,1.25e-09,199;UBERON:0011216,1.59e-09,223;UBERON:0002108,3.85e-09,4;UBERON:0001041,2.86e-08,87;UBERON:0001048,8.97e-08,160;UBERON:0003914,2.64e-07,117 | |||
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| ||
|short_description=p2@NR1H4 | |||
}} | }} |
Latest revision as of 07:22, 25 September 2015
Short description: | p2@NR1H4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NR1H4_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -1bp_to_uc001thp.1, uc001thq.1, uc001thr.1, uc010svj.1, uc010svk.1_5end |
EntrezGene: | NR1H4 |
HGNC: | 7967 |
UniProt: | Q96RI1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.92e-26 | 12 |
hepatic stem cell | 5.21e-11 | 2 |
hepatic mesenchymal stem cell | 5.21e-11 | 2 |
prostate stromal cell | 3.21e-07 | 3 |
cardiac muscle cell | 3.42e-07 | 3 |
cardiac muscle myoblast | 3.42e-07 | 3 |