FFCP PHASE1:Hg19::chr3:27764190..27764208,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8320 | |EntrezGene=8320 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3372 | |HGNC=3372 | ||
|TSSclassifier=strong | |||
|UniProt=F5H3U2,B7ZA51 | |UniProt=F5H3U2,B7ZA51 | ||
|association_with_transcript=0bp_to_ENST00000461503,ENST00000535713,ENST00000537516,uc011axc.1_5end | |association_with_transcript=0bp_to_ENST00000461503,ENST00000535713,ENST00000537516,uc011axc.1_5end | ||
|cluster_id=chr3:27764190..27764208,- | |||
|coexpression_cluster_id=C114 | |||
|description=CAGE_peak_2_at_EOMES_5end | |description=CAGE_peak_2_at_EOMES_5end | ||
|id=chr3:27764190..27764208,- | |id=chr3:27764190..27764208,- | ||
|ontology_enrichment_celltype=CL:0000625!4.12e-16!11;CL:0000047!1.30e-11!8;CL:0000791!1.18e-10!18;CL:0000789!1.18e-10!18;CL:0002420!1.18e-10!18;CL:0002419!1.18e-10!18;CL:0000790!1.18e-10!18;CL:0000084!1.40e-09!25;CL:0000827!1.40e-09!25;CL:0002322!2.37e-09!5;CL:0000540!3.65e-08!6;CL:0000031!3.65e-08!6;CL:0000404!3.65e-08!6;CL:0000838!6.55e-08!52;CL:0000542!1.14e-07!53;CL:0000051!1.14e-07!53;CL:0002319!1.16e-07!25;CL:0000148!1.34e-07!10;CL:0000541!1.34e-07!10 | |ontology_enrichment_celltype=CL:0000625!4.12e-16!11;CL:0000047!1.30e-11!8;CL:0000791!1.18e-10!18;CL:0000789!1.18e-10!18;CL:0002420!1.18e-10!18;CL:0002419!1.18e-10!18;CL:0000790!1.18e-10!18;CL:0000084!1.40e-09!25;CL:0000827!1.40e-09!25;CL:0002322!2.37e-09!5;CL:0000540!3.65e-08!6;CL:0000031!3.65e-08!6;CL:0000404!3.65e-08!6;CL:0000838!6.55e-08!52;CL:0000542!1.14e-07!53;CL:0000051!1.14e-07!53;CL:0002319!1.16e-07!25;CL:0000148!1.34e-07!10;CL:0000541!1.34e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000625;8.13e-22;11!CL:0000540;1.01e-14;6!CL:0000404;1.01e-14;6!CL:0002319;2.38e-14;25!CL:0000791;5.38e-13;18!CL:0000789;5.38e-13;18!CL:0002419;5.38e-13;18!CL:0000047;9.30e-12;2!CL:0000084;4.15e-09;25!CL:0002605;7.91e-08;3!CL:0000128;4.32e-07;7!CL:0000126;4.32e-07;7!CL:0000127;4.32e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,7.95e-24,8;CL:0000625,7.52e-22,11;CL:0000540,1.08e-14,6;CL:0000031,1.08e-14,6;CL:0000404,1.08e-14,6;CL:0002319,2.42e-14,25;CL:0000791,5.14e-13,18;CL:0000789,5.14e-13,18;CL:0002420,5.14e-13,18;CL:0002419,5.14e-13,18;CL:0000790,5.14e-13,18;CL:0000084,4.02e-09,25;CL:0000827,4.02e-09,25;CL:0000133,2.84e-08,59;CL:0000838,3.25e-08,52;CL:0000542,5.02e-08,53;CL:0000051,5.02e-08,53;CL:0002605,7.65e-08,3;CL:0000128,4.23e-07,7;CL:0000126,4.23e-07,7;CL:0000127,4.23e-07,7;CL:0002453,4.23e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000031;1.01e-14;6!CL:0000790;5.38e-13;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.97e-11!115;UBERON:0005743!7.45e-09!86;UBERON:0001017!8.59e-09!82;UBERON:0002680!2.85e-08!9;UBERON:0001895!2.85e-08!9;UBERON:0010092!2.85e-08!9;UBERON:0000178!3.02e-08!15;UBERON:0000179!3.02e-08!15;UBERON:0000463!3.02e-08!15;UBERON:0004733!1.63e-07!12;UBERON:0002028!1.63e-07!12;UBERON:0007277!1.63e-07!12;UBERON:0000073!2.33e-07!94;UBERON:0001016!2.33e-07!94;UBERON:0004732!7.94e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.22e-08;15!UBERON:0000179;4.22e-08;15!UBERON:0000463;4.22e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.91e-08,15;UBERON:0000179,3.91e-08,15;UBERON:0000463,3.91e-08,15;UBERON:0001017,4.31e-08,81;UBERON:0001016,4.76e-07,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61560529038394,0,1.25381888591235,7.44213566540748,0.410623275218653,1.25542639594803,25.6749043313116,30.1309163281301,30.9333370562759,0.393364276848904,0.383829398097213,0,0,0,0,0,0,0,0,0,0.217010870715852,0.447830948479849,0.32389366601898,0,0,0,0,0,0,0,0.575384784644301,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0.383220493601921,1.03088233644789,0.506039384039006,2.54852331459277,3.25541726928209,0.950452044448374,0.602300476311091,1.4078527226986,1.24930726552346,1.65744076430812,4.10563998460523,0.80642697289893,1.06976078313403,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0.324547393654683,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,3.44577397635862,2.5562667431294,0.829288440122964,0.504641701751257,2.18986415445498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0.381988425558278,1.17217447210047,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.215627574859517,0.641715181398742,5.84417635711666,11.712586847186,34.0247077622186,2.01019518401218,18.5002237979417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.01489521846434,1.52927441428475,1.13929437434833,0.476463550915578,0.822724546172388,1.94541993357815,0,1.58625035258854,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0.796991953004279,1.10513566212459,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0.663475559587348,0.886642856860642,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0.296521128680622,0,0.104421949505455,0,0,0,0,0,0,0,0,21.1190205525038,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0.706049013532002,0.225980740780532,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.272406812223151,17.5220931826871,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,1.38823636338003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,8.82250936776013,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0.206686796501184,0,19.6910931246559,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.0679697329768317,0,0,0,0.235479278551542,0.157115589916002,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0,0.11294608203896,0.219881033490858,0,0,0,0,0,0,0,0,0,0,1.12780701575824,0.515663103788617,0,0,0,0,0,0,0,0,0,13.9632220908921,0,0,0,0,0,0,173.70364488668,0,0,0,0.250707539292375,0,0,0,0,0.213233981900981,0,0.129177819672012,0.0620747142958579,0,0.0636471582781649,0,0,0,0.80822463617505,0,0,0,0,0,0,2.34640942403454,0.244482888365733,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61560529038394,0,1.25381888591235,7.44213566540748,0.410623275218653,1.25542639594803,25.6749043313116,30.1309163281301,30.9333370562759,0.393364276848904,0.383829398097213,0,0,0,0,0,0,0,0,0,0.217010870715852,0.447830948479849,0.32389366601898,0,0,0,0,0,0,0,0.575384784644301,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0.383220493601921,1.03088233644789,0.506039384039006,2.54852331459277,3.25541726928209,0.950452044448374,0.602300476311091,1.4078527226986,1.24930726552346,1.65744076430812,4.10563998460523,0.80642697289893,1.06976078313403,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0.324547393654683,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,3.44577397635862,2.5562667431294,0.829288440122964,0.504641701751257,2.18986415445498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0.381988425558278,1.17217447210047,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.215627574859517,0.641715181398742,5.84417635711666,11.712586847186,34.0247077622186,2.01019518401218,18.5002237979417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.01489521846434,1.52927441428475,1.13929437434833,0.476463550915578,0.822724546172388,1.94541993357815,0,1.58625035258854,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0.796991953004279,1.10513566212459,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0.663475559587348,0.886642856860642,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0.296521128680622,0,0.104421949505455,0,0,0,0,0,0,0,0,21.1190205525038,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0.706049013532002,0.225980740780532,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.272406812223151,17.5220931826871,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,1.38823636338003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,8.82250936776013,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0.206686796501184,0,19.6910931246559,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.0679697329768317,0,0,0,0.235479278551542,0.157115589916002,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0,0.11294608203896,0.219881033490858,0,0,0,0,0,0,0,0,0,0,1.12780701575824,0.515663103788617,0,0,0,0,0,0,0,0,0,13.9632220908921,0,0,0,0,0,0,173.70364488668,0,0,0,0.250707539292375,0,0,0,0,0.213233981900981,0,0.129177819672012,0.0620747142958579,0,0.0636471582781649,0,0,0,0.80822463617505,0,0,0,0,0,0,2.34640942403454,0.244482888365733,0,0,0.201273793591026,0 | ||
|short_description=p2@EOMES | |short_description=p2@EOMES | ||
}} | }} |
Latest revision as of 21:18, 17 September 2015
Short description: | p2@EOMES |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_EOMES_5end |
Coexpression cluster: | C114_teratocarcinoma_medulloblastoma_carcinosarcoma_iPS_anaplastic_acute_neuroblastoma |
Association with transcript: | 0bp_to_ENST00000461503, ENST00000535713, ENST00000537516, uc011axc.1_5end |
EntrezGene: | EOMES |
HGNC: | 3372 |
UniProt: | F5H3U2B7ZA51 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 7.95e-24 | 8 |
CD8-positive, alpha-beta T cell | 7.52e-22 | 11 |
neuron | 1.08e-14 | 6 |
neuroblast | 1.08e-14 | 6 |
electrically signaling cell | 1.08e-14 | 6 |
neural cell | 2.42e-14 | 25 |
mature alpha-beta T cell | 5.14e-13 | 18 |
alpha-beta T cell | 5.14e-13 | 18 |
immature T cell | 5.14e-13 | 18 |
mature T cell | 5.14e-13 | 18 |
immature alpha-beta T cell | 5.14e-13 | 18 |
T cell | 4.02e-09 | 25 |
pro-T cell | 4.02e-09 | 25 |
neurectodermal cell | 2.84e-08 | 59 |
lymphoid lineage restricted progenitor cell | 3.25e-08 | 52 |
lymphocyte | 5.02e-08 | 53 |
common lymphoid progenitor | 5.02e-08 | 53 |
astrocyte of the cerebral cortex | 7.65e-08 | 3 |
oligodendrocyte | 4.23e-07 | 7 |
macroglial cell | 4.23e-07 | 7 |
astrocyte | 4.23e-07 | 7 |
oligodendrocyte precursor cell | 4.23e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
blood | 3.91e-08 | 15 |
haemolymphatic fluid | 3.91e-08 | 15 |
organism substance | 3.91e-08 | 15 |
central nervous system | 4.31e-08 | 81 |
nervous system | 4.76e-07 | 89 |