FFCP PHASE1:Hg19::chr12:52448293..52448318,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:52448293..52448318,+
|short_description=p10@NR4A1
|description=CAGE_peak_10_at_NR4A1_5end
|association_with_transcript=180bp_to_AB307717,AB464647,AB590255...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3164 | |EntrezGene=3164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7980 | |HGNC=7980 | ||
|TSSclassifier=strong | |||
|UniProt=Q53Y00,Q6IBU8 | |UniProt=Q53Y00,Q6IBU8 | ||
|association_with_transcript=180bp_to_AB307717,AB464647,AB590255,BT007144,CR456704,CU677577,DQ891134,DQ894313,HQ692855_5end | |||
|cluster_id=chr12:52448293..52448318,+ | |||
|coexpression_cluster_id=C1018 | |||
|description=CAGE_peak_10_at_NR4A1_5end | |||
|id=chr12:52448293..52448318,+ | |||
|ontology_enrichment_celltype=CL:0000860!3.44e-17!45;CL:0002057!3.03e-16!42;CL:0000557!6.55e-12!71;CL:0000839!1.20e-10!70;CL:0000766!2.65e-10!76;CL:0002009!8.38e-10!65;CL:0002194!6.10e-09!63;CL:0000576!6.10e-09!63;CL:0000040!6.10e-09!63;CL:0000559!6.10e-09!63;CL:0000738!8.96e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.51e-17;33!CL:0002057;9.51e-17;33!CL:0000473;7.52e-12;39!CL:0000234;7.52e-12;39!CL:0000576;1.55e-09;48!CL:0000766;1.61e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.94e-17,42;CL:0002057,3.94e-17,42;CL:0000557,5.61e-15,67;CL:0000473,1.91e-14,48;CL:0000234,1.91e-14,48;CL:0000839,1.30e-13,66;CL:0000766,1.95e-13,72;CL:0002009,1.02e-11,61;CL:0002194,1.04e-10,59;CL:0000576,1.04e-10,59;CL:0000040,1.04e-10,59;CL:0000559,1.04e-10,59;CL:0000763,2.96e-08,108;CL:0000049,2.96e-08,108;CL:0002031,9.47e-08,120;CL:0000738,6.07e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;1.64e-12;42!UBERON:0005062;5.19e-08;4!UBERON:0007284;5.19e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;5.74e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,9.17e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.15e-13!115;UBERON:0002390!2.84e-10!102;UBERON:0003061!2.84e-10!102;UBERON:0000062!6.37e-10!511;UBERON:0002371!1.11e-09!80;UBERON:0001474!1.72e-09!86;UBERON:0002193!2.67e-08!112;UBERON:0004765!4.52e-08!101;UBERON:0001434!4.52e-08!101;UBERON:0000926!2.76e-07!448;UBERON:0004120!2.76e-07!448;UBERON:0006603!2.76e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;1.18e-09;3!UBERON:0002133;1.42e-07;2!UBERON:0005090;3.80e-07;2!UBERON:0001630;3.80e-07;2!UBERON:0002081;3.80e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,1.14e-12,82;UBERON:0002371,1.37e-12,76;UBERON:0004765,4.61e-11,90;UBERON:0001434,1.85e-10,100;UBERON:0004151,1.12e-09,3;UBERON:0002405,2.29e-09,93;UBERON:0002390,1.23e-08,98;UBERON:0003061,1.23e-08,98;UBERON:0007023,3.67e-08,114;UBERON:0002133,1.54e-07,2;UBERON:0005090,2.12e-07,2;UBERON:0001630,2.12e-07,2;UBERON:0002193,2.15e-07,108;UBERON:0002081,3.70e-07,2;UBERON:0010227,3.70e-07,2 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0.786728553697808,0,1.23852898652861,0,0,0,0,0,0,1.10799081706375,0.601633342410425,0.868043482863407,0,0,0,0,0.755751887377619,0,2.55671940596253,1.6446715520873,2.16794459626573,0.863077176966451,0.512321413058201,1.6553756092201,3.10271112662957,7.10033151942209,5.41705946377367,2.44715041405386,3.547779950752,0.898893937780338,8.26426509401437,3.85114832491312,7.67204550958849,0.329851300186716,0.199463657621632,0,0,0,0,2.26123798731069,1.0429658368404,1.3031330682307,0,0.368277635987565,0.949387162322653,0.845021145247767,1.91343869968539,0.209658645508376,0.22465726229299,0.600707571366025,0.16072558669708,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0,1.76171156811282,1.14681968437569,0,0.560508562981536,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0.579386075843295,0,0.973269740605272,0,0,0,0.392937226493138,0,0,0,0,0,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0.45071417671979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0.943819157121151,0.784885860501384,0.769494313892781,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,8.29312462163088,6.48539790376326,7.95327330586194,0.190493682876507,0,0,0,0.308482478109971,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.428933980974443,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0.413536052245775,0.862856803274467,0.853820462427555,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0.116210378459959,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0.464845549297286,0,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26664581178598,0.329294892959902,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0.935702702041099,0.586032717087576,0.121360521749513,0.222886768554957,0,1.19372242368845,0,0.307160702099232,0,0.140669416410513,0.111308705022906,0,0.211125408127993,0.796991953004279,1.38141957765574,0,0,0,0,0.0898683511473268,0.716084698702437,0,2.17015492401254,0,0,0.969332746095218,0,0,0.260427761085233,0.262379999988587,0.724999575434793,0,0.254253650292766,0,0.344743373241465,0,0,0,0,0,0,0.295547618953547,1.75508317723178,0.435753854075961,2.50962739701486,0.846452843541768,0,0,0.0897576444097721,0,0.638002319463839,0.0915975934018623,0.533034776018635,0,0,0,0,0.19606253431774,0,0,0,0,0.489698424477443,0.141353071433941,0,0,0.353830258013357,0,0.296521128680622,0.617819694732514,0.626531697032732,0.269604531922708,4.81546588379273,0.468528891450678,0,0.391329237864179,0,0.789168805698781,2.41981432097328,0,0.126373159256976,0,0,0,0,0,1.19472429772959,0.284609546029793,0,0.173559738335131,0.195984794828755,0.0870592065804026,0.34945333648406,0,0.19351266257817,0.219267951258557,0.246346371159628,0.775912131907355,0,0.451961481561065,0,0,0,0.391102765469606,0,5.54977786322317,0,0.144090417154106,0,0.171594997861965,0,0.248505071130865,0.707082103850386,0,0,0,0.288950589901519,0.600420288709789,0,0,0,0,3.35138881526705,0.916641696046735,4.30723814746088,0.599037001496973,1.28767814440971,1.11585728720936,1.07493555978762,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,4.6428117273477,0.121499113316049,0,0.236417121897595,0.262272940674991,0.633602019116439,3.22717210799121,0,1.42939065274673,1.32418394073086,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0.146552233678082,0,0,0,0.684347351537318,0,1.49502377594773,2.04365596629566,4.55662960881915,0,0,0.121792598380896,0,0,0.2506898940227,0,0.327872630709804,0,0,0,0.250381861413,0,0.110929051536852,0.248385611765534,0.415045904808692,0,1.06154382279153,2.28372266835974,0.470531639396343,0,0,0.149254802886874,0,0,0.568209015825267,0,0,0.686520205190771,0.604923695052956,0.15543720058278,0,0,0,0,0.829412415681711,0,0,0,0,0,0.363697318405119,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0.737318726261158,0,0.999936979274649,0.106691729694141,0,0,0,0,0.622077260032973,0,0.107824811396682,0,0.218419276384028,0,0.850299680406731,1.23935764259002,0,0,0,0,4.93746321166957,0,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0.693153996902029,0,0.690359926060101,0,3.53488543241509,0,0,0,0.327543835020193,0.443568258651136,0,0,0,0.1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| ||
|short_description=p10@NR4A1 | |||
}} | }} |
Latest revision as of 21:14, 18 September 2015
Short description: | p10@NR4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_NR4A1_5end |
Coexpression cluster: | C1018_immature_CD14_Mast_cervical_seminal_heart_ovary |
Association with transcript: | 180bp_to_AB307717, AB464647, AB590255, BT007144, CR456704, CU677577, DQ891134, DQ894313, HQ692855_5end |
EntrezGene: | NR4A1 |
HGNC: | 7980 |
UniProt: | Q53Y00Q6IBU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.94e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.94e-17 | 42 |
granulocyte monocyte progenitor cell | 5.61e-15 | 67 |
defensive cell | 1.91e-14 | 48 |
phagocyte | 1.91e-14 | 48 |
myeloid lineage restricted progenitor cell | 1.30e-13 | 66 |
myeloid leukocyte | 1.95e-13 | 72 |
macrophage dendritic cell progenitor | 1.02e-11 | 61 |
monopoietic cell | 1.04e-10 | 59 |
monocyte | 1.04e-10 | 59 |
monoblast | 1.04e-10 | 59 |
promonocyte | 1.04e-10 | 59 |
myeloid cell | 2.96e-08 | 108 |
common myeloid progenitor | 2.96e-08 | 108 |
hematopoietic lineage restricted progenitor cell | 9.47e-08 | 120 |
leukocyte | 6.07e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
bone element | 1.14e-12 | 82 |
bone marrow | 1.37e-12 | 76 |
skeletal element | 4.61e-11 | 90 |
skeletal system | 1.85e-10 | 100 |
cardiac chamber | 1.12e-09 | 3 |
immune system | 2.29e-09 | 93 |
hematopoietic system | 1.23e-08 | 98 |
blood island | 1.23e-08 | 98 |
adult organism | 3.67e-08 | 114 |
atrioventricular valve | 1.54e-07 | 2 |
muscle structure | 2.12e-07 | 2 |
muscle organ | 2.12e-07 | 2 |
hemolymphoid system | 2.15e-07 | 108 |
cardiac atrium | 3.70e-07 | 2 |
future cardiac atrium | 3.70e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 9.17e-07 | 2 |