FFCP PHASE1:Hg19::chr4:177713756..177713777,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7424 | |EntrezGene=7424 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12682 | |HGNC=12682 | ||
|TSSclassifier=strong | |||
|UniProt=P49767 | |UniProt=P49767 | ||
|association_with_transcript=103bp_to_ENST00000280193_5end | |association_with_transcript=103bp_to_ENST00000280193_5end | ||
|cluster_id=chr4:177713756..177713777,- | |||
|coexpression_cluster_id=C2788 | |||
|description=CAGE_peak_4_at_VEGFC_5end | |description=CAGE_peak_4_at_VEGFC_5end | ||
|id=chr4:177713756..177713777,- | |id=chr4:177713756..177713777,- | ||
|ontology_enrichment_celltype=CL:0000055!1.84e-32!180;CL:0000057!4.10e-22!75;CL:0000680!5.36e-13!57;CL:0000056!5.36e-13!57;CL:0000355!5.36e-13!57;CL:0000192!9.80e-12!42;CL:0000514!9.80e-12!42;CL:0000187!2.96e-11!54;CL:0000183!3.52e-11!59;CL:0000359!4.96e-11!32;CL:0000222!2.06e-10!119;CL:0000220!8.12e-10!246;CL:0002620!1.10e-09!23;CL:0002321!2.16e-09!248;CL:0000393!2.49e-08!60;CL:0000211!2.49e-08!60;CL:0002334!3.57e-08!12;CL:0002371!3.66e-08!591;CL:0000548!2.30e-07!679;CL:0000004!2.30e-07!679;CL:0000255!2.30e-07!679;CL:0000144!3.81e-07!625;CL:0000012!6.63e-07!682 | |ontology_enrichment_celltype=CL:0000055!1.84e-32!180;CL:0000057!4.10e-22!75;CL:0000680!5.36e-13!57;CL:0000056!5.36e-13!57;CL:0000355!5.36e-13!57;CL:0000192!9.80e-12!42;CL:0000514!9.80e-12!42;CL:0000187!2.96e-11!54;CL:0000183!3.52e-11!59;CL:0000359!4.96e-11!32;CL:0000222!2.06e-10!119;CL:0000220!8.12e-10!246;CL:0002620!1.10e-09!23;CL:0002321!2.16e-09!248;CL:0000393!2.49e-08!60;CL:0000211!2.49e-08!60;CL:0002334!3.57e-08!12;CL:0002371!3.66e-08!591;CL:0000548!2.30e-07!679;CL:0000004!2.30e-07!679;CL:0000255!2.30e-07!679;CL:0000144!3.81e-07!625;CL:0000012!6.63e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.28e-12;23!CL:0000359;8.46e-11;32!CL:0000057;2.84e-10;73!CL:0002334;3.72e-10;12!CL:0002320;3.59e-09;188!CL:0000192;7.09e-09;43!CL:0000134;7.91e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.60e-26,76;CL:0002620,1.61e-12,23;CL:0000359,3.29e-11,32;CL:0000048,4.26e-11,427;CL:0000723,5.13e-11,433;CL:0000192,6.17e-11,43;CL:0000514,6.17e-11,43;CL:0000680,9.62e-11,58;CL:0000056,9.62e-11,58;CL:0000355,9.62e-11,58;CL:0002334,3.02e-10,12;CL:0000034,5.13e-10,441;CL:0000187,7.38e-09,55;CL:0000393,5.58e-07,61;CL:0000211,5.58e-07,61;CL:0002321,7.90e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;7.09e-09;43!CL:0000355;4.28e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!2.57e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.13e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.94e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.71e-19!83;UBERON:0002329!5.71e-19!83;UBERON:0003077!5.71e-19!83;UBERON:0003059!5.71e-19!83;UBERON:0007282!5.71e-19!83;UBERON:0009618!5.71e-19!83;UBERON:0007285!5.71e-19!83;UBERON:0000486!1.24e-18!82;UBERON:0003102!1.11e-15!95;UBERON:0004290!4.62e-15!70;UBERON:0002100!6.00e-15!216;UBERON:0005256!1.98e-14!143;UBERON:0000475!2.31e-14!365;UBERON:0001134!1.08e-12!61;UBERON:0002036!1.08e-12!61;UBERON:0003082!1.08e-12!61;UBERON:0002385!1.44e-12!63;UBERON:0001015!1.44e-12!63;UBERON:0000383!1.44e-12!63;UBERON:0001637!1.66e-11!42;UBERON:0003509!1.66e-11!42;UBERON:0004572!1.66e-11!42;UBERON:0003104!2.84e-11!238;UBERON:0009142!2.84e-11!238;UBERON:0001981!2.63e-10!60;UBERON:0007500!2.63e-10!60;UBERON:0004537!2.63e-10!60;UBERON:0006965!2.63e-10!60;UBERON:0004872!4.02e-10!84;UBERON:0002199!4.62e-10!45;UBERON:0002416!4.62e-10!45;UBERON:0000490!6.37e-10!138;UBERON:0004573!1.39e-09!33;UBERON:0004571!1.39e-09!33;UBERON:0000055!2.51e-09!69;UBERON:0000481!4.71e-09!347;UBERON:0000468!1.35e-08!659;UBERON:0002097!1.69e-08!40;UBERON:0002049!8.57e-08!79;UBERON:0007798!8.57e-08!79;UBERON:0000483!3.25e-07!309;UBERON:0003914!3.45e-07!118;UBERON:0000119!6.19e-07!312;UBERON:0000467!6.73e-07!625;UBERON:0000480!9.37e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.13e-08;41!UBERON:0002199;3.70e-08;46!UBERON:0002416;3.70e-08;46!UBERON:0003102;7.16e-08;50!UBERON:0002384;1.64e-07;198!UBERON:0001434;3.22e-07;36!UBERON:0002204;8.37e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,4.57e-17,83;UBERON:0003102,6.88e-16,99;UBERON:0007503,2.62e-13,78;UBERON:0002329,1.24e-12,71;UBERON:0003059,1.24e-12,71;UBERON:0007282,1.24e-12,71;UBERON:0004290,1.24e-12,71;UBERON:0009618,1.24e-12,71;UBERON:0002199,2.44e-12,46;UBERON:0002416,2.44e-12,46;UBERON:0003077,3.02e-12,72;UBERON:0007285,3.02e-12,72;UBERON:0007524,7.16e-12,73;UBERON:0002097,8.66e-11,41;UBERON:0005256,4.53e-10,122;UBERON:0001134,7.22e-10,62;UBERON:0002036,7.22e-10,62;UBERON:0003082,7.22e-10,62;UBERON:0001637,8.37e-10,42;UBERON:0003509,8.37e-10,42;UBERON:0004572,8.37e-10,42;UBERON:0002385,3.51e-09,64;UBERON:0001015,3.51e-09,64;UBERON:0000383,3.51e-09,64;UBERON:0002100,7.56e-09,199;UBERON:0004573,1.02e-07,33;UBERON:0004571,1.02e-07,33;UBERON:0000490,2.57e-07,148;UBERON:0000075,7.82e-07,16 | |||
|phase1_expression=5.08699461957559,6.42301571672949,6.62485699251064,2.00146596706261,4.91657203870017,6.10636966870258,2.53299878168311,1.89515962028049,0.522371256399677,2.21160542851358,0.697801167972428,0,0,2.35156070624089,2.65117900582333,2.01697543935533,0.602694528023977,0.730310090387373,4.39139518911456,0.738726348460727,0.204000691244253,0,0,0,0.251085279189606,0,0,0,0,0,0,1.83884244895785,3.0120591877825,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.80719576192283,0.50133791063589,2.31754430337318,3.9764297352555,7.29952305453954,0,0.221729397462564,0.702678285545008,0.261958150995425,1.45718115317017,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0.694281003215189,0.56530794192401,1.67799774483962,0,0.835979866147242,0,0,0,0.805658634218294,0,0,0,0.81014194788176,0.357198913136319,0.22452937262617,0.450445921933289,0,0.949265659568129,0.183201743930407,0,0,0.872188104285069,4.96971951695318,1.39293562831038,9.26864265692532,7.17091551872034,3.54668382198357,1.12135520028461,2.1349799145941,2.22000793575444,1.24484414159907,1.61652806483626,0.326923806226917,0,0,0.70296429550139,1.87296046098192,1.1409436430889,2.69007624993242,1.29177948508141,1.29498355494505,1.12360645361799,0.816616685019573,1.84251475967652,1.44656093646072,5.94001428641027,5.19260551484969,3.64064544775211,7.90479955997862,3.19838616512726,2.37725187756732,2.49357703935765,3.5118209670467,5.51678032438235,5.40857012063748,1.24775401476023,12.1984952268426,2.34913127700424,4.4505699243508,21.3064678219926,6.18315175430633,5.41045134095821,4.83903826462134,12.1518959213712,6.33340533547791,8.58274832429989,5.43094401989566,1.77810662500693,13.4903645156313,6.54888638479662,3.56077243852024,3.67195621010264,11.7280831854059,3.44165514466805,0,0,0.232387885739037,0,0,0,3.12899064659632,3.21620469096443,5.52539685409922,0.928735856063958,2.16563844500876,0.354920400119532,0.168584690078102,0.482022059766964,0.330881918197182,0.217879444092406,0.237270619111097,0.134831308160164,0.196221465125346,0,0.738155454624648,7.01208869017229,0,1.47008711385542,0,0,0,0,0,0.686271241194102,0.658501712451753,0,2.11110842064425,1.574003567695,0.977424915930974,2.07986957055916,1.44331342025273,0,0.70445216541493,0.144366447761074,1.38895653772983,0.380508304469197,0,0,0,0,0,9.3733833986777,7.22323151255096,3.82792762554443,1.97028749946266,1.16253575405585,0.766765358330422,0,0.088048434013226,0,0.144119953416961,0,0.190493682876507,0.381988425558278,0,0,0.205654985406647,0,0,0,0,0.4400297149257,9.69537868183333,0,0.845302752556,3.72313363218819,7.28052058379563,0.257207374262142,4.25547396069835,2.66422179016099,1.71573592389777,0.542621605391443,0.823240336780769,1.95441710576241,1.06617584622764,0.791951872933429,2.41151501647669,2.61460037580088,1.3996218765488,0,0,0,0.958499421966331,0,5.70547620162874,18.5320072534501,13.7669136108757,16.4736086180704,0,0,0,0,0,0,0,0,0,0,0,0,1.8403723757871,1.50051156317903,1.35632511849868,0.207970861530807,1.60586089917446,1.26161932027148,2.45996971484698,5.41702979509894,2.27407504055985,2.0694614258501,5.31380478828349,6.82165923604302,3.30157734978715,0.783204629850962,0.343143423810856,0,0,0,0,1.66435439510497,0.30239029332968,8.93188108147597,7.82656063769118,6.73584226639377,4.86928767171664,5.11707249066703,9.00781958404202,2.96836132889982,7.71048469013278,7.99027763909072,5.25613798488379,4.15403543346897,4.64841513839837,0,11.228362336984,1.19705285616665,2.18147451512753,3.09554985611419,1.31124414959424,1.80479845162965,0.770153371044148,0,0,0.527758144464379,1.13733384070897,0,3.23873874153209,1.54227252690289,2.16757150035082,1.50506932156456,0,0,0.447749509444357,0,0,0.256450125116389,0.328014645699706,0,0.412164046590889,0.640986253728404,1.32015199872941,2.87132768998086,0.650060246036521,6.42735719376638,1.64340221096607,0.616194468458578,0.460511024178389,1.65403886981437,0.644521469209642,0.290033387828457,1.27839941124151,0.979352392114111,5.12383237619032,5.38132188622297,4.97689578728878,2.32662895967765,4.64845549297286,8.81474571125792,6.2733354314454,4.62050370264133,7.45228442443831,5.21959795245044,0.9266210955196,3.43499728180779,0,0.316379424718726,4.19386426632415,2.55897791311334,0.855877976067841,4.45484547096312,4.70969184119538,1.97859703341646,1.09814811894422,1.64937363283961,3.23491970517306,1.58510321173008,0,0.48763373908959,13.6479554193519,11.6215161432431,3.41249778519964,0.848432591722276,6.78048699721457,6.06501877900737,4.64407282668854,11.3997230165978,1.15755106853338,0,4.66693867014219,4.957175969596,2.25356482025793,1.29070216983646,0.785992328104969,4.9933947207375,1.06428319221179,1.47775344708365,2.30506425071931,0,0,3.07910760721639,4.02181365321472,7.62236894029258,0.376575203107117,4.3050537267123,3.36942951335251,3.54744122829341,11.7158934105549,0,0,0,0,0,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| ||
|short_description=p4@VEGFC | |short_description=p4@VEGFC | ||
}} | }} |
Latest revision as of 22:36, 16 September 2015
Short description: | p4@VEGFC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VEGFC_5end |
Coexpression cluster: | C2788_Urothelial_Fibroblast_Small_Smooth_Mallassezderived_Myoblast_Gingival |
Association with transcript: | 103bp_to_ENST00000280193_5end |
EntrezGene: | VEGFC |
HGNC: | 12682 |
UniProt: | P49767 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.60e-26 | 76 |
skin fibroblast | 1.61e-12 | 23 |
vascular associated smooth muscle cell | 3.29e-11 | 32 |
multi fate stem cell | 4.26e-11 | 427 |
somatic stem cell | 5.13e-11 | 433 |
smooth muscle cell | 6.17e-11 | 43 |
smooth muscle myoblast | 6.17e-11 | 43 |
muscle precursor cell | 9.62e-11 | 58 |
myoblast | 9.62e-11 | 58 |
multi-potent skeletal muscle stem cell | 9.62e-11 | 58 |
preadipocyte | 3.02e-10 | 12 |
stem cell | 5.13e-10 | 441 |
muscle cell | 7.38e-09 | 55 |
electrically responsive cell | 5.58e-07 | 61 |
electrically active cell | 5.58e-07 | 61 |
embryonic cell | 7.90e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 4.57e-17 | 83 |
surface structure | 6.88e-16 | 99 |
epithelial vesicle | 2.62e-13 | 78 |
somite | 1.24e-12 | 71 |
presomitic mesoderm | 1.24e-12 | 71 |
presumptive segmental plate | 1.24e-12 | 71 |
dermomyotome | 1.24e-12 | 71 |
trunk paraxial mesoderm | 1.24e-12 | 71 |
integument | 2.44e-12 | 46 |
integumental system | 2.44e-12 | 46 |
paraxial mesoderm | 3.02e-12 | 72 |
presumptive paraxial mesoderm | 3.02e-12 | 72 |
dense mesenchyme tissue | 7.16e-12 | 73 |
skin of body | 8.66e-11 | 41 |
trunk mesenchyme | 4.53e-10 | 122 |
skeletal muscle tissue | 7.22e-10 | 62 |
striated muscle tissue | 7.22e-10 | 62 |
myotome | 7.22e-10 | 62 |
artery | 8.37e-10 | 42 |
arterial blood vessel | 8.37e-10 | 42 |
arterial system | 8.37e-10 | 42 |
muscle tissue | 3.51e-09 | 64 |
musculature | 3.51e-09 | 64 |
musculature of body | 3.51e-09 | 64 |
trunk | 7.56e-09 | 199 |
systemic artery | 1.02e-07 | 33 |
systemic arterial system | 1.02e-07 | 33 |
unilaminar epithelium | 2.57e-07 | 148 |
subdivision of skeletal system | 7.82e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.94e-11 | 14 |